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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0737100 |
| Transcript ID | LotjaGi1g1v0737100.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | High mobility group B-like protein; TAIR: AT1G55650.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LG02|HMG11_ARATH Putative high mobility group B protein 11; TrEMBL-Plants: tr|A0A0B2QUC4|A0A0B2QUC4_GLYSO High mobility group B protein 10; Found in the gene: LotjaGi1g1v0737100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131114757..131118038) extracted from Lotus japonicus Gifu genome v1.2.
CTGCCACGTACGCTTGAGCAGAGTGTAGCTGTCGCATAGGCATATGGCCTCTCTTTGTGTCCATATCCCTTTCCTCGCAC TAAAACACACAATCGATTCCACACATTTTCCAGCAAGAAAATTGAAATAGGTTTGTATGATCGTGTTTGAGGTTAAGGGC TTAGTTTAGTTTAGGTGCCCTCTCAAACATGCAAAGCGTGGAGAAGAGGACGGTGCTTCCATCAGATAAAACCCATGACT CAGAGTGCTTCTACAAGAATCTCACTGCGTTGTTGGAGTCTTCTGGACTGAGTTTAATGTGAGTTTCCAGTCCACTACAC AAAACGTGCTTCCCATTTCTCTGTTTTGCCCTTAGTTTGAAGATGGGAGGGTCTTTATTGACATTTTCTTTATACTGCTC TGTTTGGTTCCTAGTAAATTGCTTGCAAAGAAAGTTTTCTCCTTTTTGTGTTGGCGCTTCCGGTTTAGCTAATGGTTTTC CTTACTCTAAGTGAGATGCATTGCCTTGTGTTGCTAGCAAATCATTTGTTGAGAAGTCCAAATTGACTAATTCACTCGAG AAATGGCTAAGATAATCTTTATAAATGGTAGAACAACCCTTACCTTGAAGTTATCTTCTAGGATAGAGTTAAACCTAACC CAAATTCTAAGATGGTATTAGAGCATGTACTAGATTGTTTATTGGAGGCTATTTATATATGTAGTGGCGGAGGCAGACTC CGGAAGAGGGTGGTGCTAAGCCTAAAGAGGGTGGTGCGGTACATGTATAATTTTGGTATTGGTAAAGAAAAGTATCATTT TGGGGGTCACTATGGCATGACCTAGTCCCCATGGTTCCGCACTGTATATATGGGTCATCCGCAGAGATGCATATCTCTGC TGACAGATGTTCATACCTGCAAATTTCAAGCTCCACATATAAGTATGACTAAGACAGGCCTCCTAAAGGGTAGAACAATT CTCATCTCTAAGCTAACTTTGGGAGTAGAGTTAGGTCTAACTCAAATTCTAATAGCATTCGTATGATGGAATAATGTGTG TTCTTATGTGTTCCTCTTTTCTCTTTGCTATGCAAAAACAGAATGAGTTAAAATTCAATATGAAATATTTAATACACACA CACACACACACATATATATATGAACTAATTCACAAGAAAGATGTGATTCATAAAATGGATTATATGAATAATGTTGTATT CCAATTGTACTTGGCAGTTTGAATGACTTGTACCTGTTTTACTTGGAGGTGACCAAAAGAGGAGGATATCATCAGGTATA TTATGTGCATATCAAGTTTGTTCATCCAATTTATTCAAGAGTCTATAATCTATATTCATGGTAAATTTAATTTTTGATTT TTTGTATTTTTGTATATCATTAGATAAGTTTGTCCCCTCACTTAGTGATATAAGACTTTTGTTGTTGTTGTTGTTGTCAG ATATCTATCTGGGATGTTCAAATTTAGGATCATTACTATGGATTTTCTTAAATGTTTTCAGGTTGACCAAGAAAAGAAAT GGGGTGAAGTGGTCTCTGCACTAAAATTAGAAGGAAGTAATGCAAAGTTATCTGCTCAAGTTGAAATGCTCTATGCAAAT CTTCTTTACGAATTCGAGCAATTGTACTTCTACAGGTGTCCTACAAAGCAAGCCAGCACCAAAGGTTAATCTAAGAGCTA GTCCAATTTGAAGCTATTTTATTAACTAAATATATTGATTCAGTATGGTGATTAATTTCACACATTTTTTATGTAGTTTC TTTGTAGTTTCTACATAGATGATTATAATCAATCTTTACTGCTTGGACATAAGAGAAGACCTTTCAGTATCTTTATTGTA TGAGATTGTTGGTGCATTTTGGTTTTATGATGACTTTTAACCTGACCTGAATGAGTCCTTCTGTTTTATCCACAACCTCA CCTTTTCCCAAAGGTCCACTTAAGAGGAAGCGGAATTTAACTCAATTAATGGATAAGGAAAATGTTCAGAGGGTGACAAT GTGCAAGGACTACTCTTCCCAGAAGACAGGTTTGGCTGCATATGTGTACTTATCTGCATACTTTTCAAATCCTAGGTAGG AGAATAGATGATTTTTTTTTTGGTAACTAGGGGAATTTTACATGACCAATTTTTAAACTCATCCCAATATATTACTTAGT TACGAGTAAATTAATTGTCAGTACTCTCGGAGTACTCAAGATTCAGTACATCCCTCACAATCTGAGAGAGTCATCCTCAT TTTTAAATTTTAGAAAAAAATCAAAATCAGGATAAACTAACAATAAAAGTCAGATGATATGCTTTAAGACGATGGAGTAT GTACTACAGGAGTACTGATTATGAATTTGAGGTAATTATGAATTACATTGGTTTGCAACTTACAGCTGAGGGTGGATATG TAGAGCCAGTGCTTCAACCGGCACCTTCAAATGACAAAGGAAGGAAGAAACGCGGAGGTGCTCCAACAGGACGAAGGACT GCATATCAGATATTCGTCAAGCAGGAATGTGCTCGATTGAGAGCTTGTAGTGAGGACTCCTTAGATCGCACGAGATTCCT ACGCATGGCTATTGACACATGGAAGAACATGTCTGAGATTGAGAAACAGGTAAATTGAAATAATGAAATTGACATCATAT CTGATATTCTTAAAACATTTATCCCTTTTTTTTGCCTTTTAACACCCTTATGTGTTTGCTTGAAATTCTCCACTTCTGAT TACTTTTCACGTAGCCATATATGGAGGAAAGCAAGAAGAACAAGGAAAAACACAAGGAGGAGGAAAACAATAAACAGAAG AACGCACAAGATATGAAGCAAGTAAACAAGCCAACTAGTCAGTGTGGTGATTATTCTGTACCTTCACAGCCTGAGACAGA TAACTCAATTGTGAGTGCAGAACTTGGCTTAGCTCTTAAAATGACTTGGGAAGTAATGACTGGAAAAGCACCCGAGGAGT CCTTACAGGAATGGGATACTTATTTTTCAGAACTAGATTTACCAACTGGTGAATCCAAGTAATTCTACTTACTCTAGTTA ATGGTGGGTTGGTCTTTTTGCTCTTTTGAGGCAATGACTATGTATGCATCCAGCAGTTTTCCCTTCTTTTTTTTGACTCA AACCAAGCTAGCTGCTATGTATATATTGTTTTGAAACAGCACAACAGGGTTGGAATGGCTGGATAGCATATGCTTCCGCC TCTTTCAGTAGTAGTGAAGTATGTAAATATTAAACGGTAGTGTAATGCAAACTTTTGTTGGAATTTATTTTTTCTTCCTG TG
CDS sequence (LotjaGi1g1v0737100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAAGCGTGGAGAAGAGGACGGTGCTTCCATCAGATAAAACCCATGACTCAGAGTGCTTCTACAAGAATCTCACTGC GTTGTTGGAGTCTTCTGGACTGAGTTTAATTTTGAATGACTTGTACCTGTTTTACTTGGAGGTGACCAAAAGAGGAGGAT ATCATCAGGTTGACCAAGAAAAGAAATGGGGTGAAGTGGTCTCTGCACTAAAATTAGAAGGAAGTAATGCAAAGTTATCT GCTCAAGTTGAAATGCTCTATGCAAATCTTCTTTACGAATTCGAGCAATTGTACTTCTACAGGTGTCCTACAAAGCAAGC CAGCACCAAAGGTCCACTTAAGAGGAAGCGGAATTTAACTCAATTAATGGATAAGGAAAATGTTCAGAGGGTGACAATGT GCAAGGACTACTCTTCCCAGAAGACAGCTGAGGGTGGATATGTAGAGCCAGTGCTTCAACCGGCACCTTCAAATGACAAA GGAAGGAAGAAACGCGGAGGTGCTCCAACAGGACGAAGGACTGCATATCAGATATTCGTCAAGCAGGAATGTGCTCGATT GAGAGCTTGTAGTGAGGACTCCTTAGATCGCACGAGATTCCTACGCATGGCTATTGACACATGGAAGAACATGTCTGAGA TTGAGAAACAGCCATATATGGAGGAAAGCAAGAAGAACAAGGAAAAACACAAGGAGGAGGAAAACAATAAACAGAAGAAC GCACAAGATATGAAGCAAGTAAACAAGCCAACTAGTCAGTGTGGTGATTATTCTGTACCTTCACAGCCTGAGACAGATAA CTCAATTGTGAGTGCAGAACTTGGCTTAGCTCTTAAAATGACTTGGGAAGTAATGACTGGAAAAGCACCCGAGGAGTCCT TACAGGAATGGGATACTTATTTTTCAGAACTAGATTTACCAACTGGTGAATCCAAGTAA
Protein sequence (LotjaGi1g1v0737100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSVEKRTVLPSDKTHDSECFYKNLTALLESSGLSLILNDLYLFYLEVTKRGGYHQVDQEKKWGEVVSALKLEGSNAKLS AQVEMLYANLLYEFEQLYFYRCPTKQASTKGPLKRKRNLTQLMDKENVQRVTMCKDYSSQKTAEGGYVEPVLQPAPSNDK GRKKRGGAPTGRRTAYQIFVKQECARLRACSEDSLDRTRFLRMAIDTWKNMSEIEKQPYMEESKKNKEKHKEEENNKQKN AQDMKQVNKPTSQCGDYSVPSQPETDNSIVSAELGLALKMTWEVMTGKAPEESLQEWDTYFSELDLPTGESK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 99 | 99 | 12.905 | ||
| Gene3D | 6 | 118 | 113 | 9.5E-13 | ||
| SMART | 12 | 95 | 84 | 2.5E-8 | – | |
| SUPERFAMILY | 13 | 100 | 88 | 5.49E-16 | ||
| PANTHER | 15 | 268 | 254 | 1.3E-85 | – | |
| PANTHER | 15 | 268 | 254 | 1.3E-85 | – | |
| SMART | 16 | 100 | 85 | 2.0E-4 | ||
| CDD | 21 | 95 | 75 | 4.3868E-15 | – | |
| Pfam | 39 | 95 | 57 | 4.5E-10 | ||
| MobiDBLite | 145 | 172 | 28 | - | – | |
| SUPERFAMILY | 154 | 234 | 81 | 2.23E-12 | ||
| Gene3D | 156 | 238 | 83 | 2.6E-11 | ||
| Pfam | 169 | 235 | 67 | 1.0E-6 | ||
| ProSiteProfiles | 169 | 238 | 70 | 10.802 | ||
| MobiDBLite | 216 | 266 | 51 | - | – | |
| MobiDBLite | 216 | 240 | 25 | - | – | |
| Coils | 220 | 247 | 28 | - | – | |
| MobiDBLite | 241 | 266 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0737100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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