Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0737100 |
| Transcript ID | LotjaGi1g1v0737100.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | High mobility group B-like protein; TAIR: AT1G55650.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LG02|HMG11_ARATH Putative high mobility group B protein 11; TrEMBL-Plants: tr|A0A0B2QUC4|A0A0B2QUC4_GLYSO High mobility group B protein 10; Found in the gene: LotjaGi1g1v0737100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131114848..131118000) extracted from Lotus japonicus Gifu genome v1.2.
ATCGATTCCACACATTTTCCAGCAAGAAAATTGAAATAGGTTTGTATGATCGTGTTTGAGGTTAAGGGCTTAGTTTAGTT TAGGTGCCCTCTCAAACATGCAAAGCGTGGAGAAGAGGACGGTGCTTCCATCAGATAAAACCCATGACTCAGAGTGCTTC TACAAGAATCTCACTGCGTTGTTGGAGTCTTCTGGACTGAGTTTAATGTGAGTTTCCAGTCCACTACACAAAACGTGCTT CCCATTTCTCTGTTTTGCCCTTAGTTTGAAGATGGGAGGGTCTTTATTGACATTTTCTTTATACTGCTCTGTTTGGTTCC TAGTAAATTGCTTGCAAAGAAAGTTTTCTCCTTTTTGTGTTGGCGCTTCCGGTTTAGCTAATGGTTTTCCTTACTCTAAG TGAGATGCATTGCCTTGTGTTGCTAGCAAATCATTTGTTGAGAAGTCCAAATTGACTAATTCACTCGAGAAATGGCTAAG ATAATCTTTATAAATGGTAGAACAACCCTTACCTTGAAGTTATCTTCTAGGATAGAGTTAAACCTAACCCAAATTCTAAG ATGGTATTAGAGCATGTACTAGATTGTTTATTGGAGGCTATTTATATATGTAGTGGCGGAGGCAGACTCCGGAAGAGGGT GGTGCTAAGCCTAAAGAGGGTGGTGCGGTACATGTATAATTTTGGTATTGGTAAAGAAAAGTATCATTTTGGGGGTCACT ATGGCATGACCTAGTCCCCATGGTTCCGCACTGTATATATGGGTCATCCGCAGAGATGCATATCTCTGCTGACAGATGTT CATACCTGCAAATTTCAAGCTCCACATATAAGTATGACTAAGACAGGCCTCCTAAAGGGTAGAACAATTCTCATCTCTAA GCTAACTTTGGGAGTAGAGTTAGGTCTAACTCAAATTCTAATAGCATTCGTATGATGGAATAATGTGTGTTCTTATGTGT TCCTCTTTTCTCTTTGCTATGCAAAAACAGAATGAGTTAAAATTCAATATGAAATATTTAATACACACACACACACACAC ATATATATATGAACTAATTCACAAGAAAGATGTGATTCATAAAATGGATTATATGAATAATGTTGTATTCCAATTGTACT TGGCAGTTTGAATGACTTGTACCTGTTTTACTTGGAGGTGACCAAAAGAGGAGGATATCATCAGGTATATTATGTGCATA TCAAGTTTGTTCATCCAATTTATTCAAGAGTCTATAATCTATATTCATGGTAAATTTAATTTTTGATTTTTTGTATTTTT GTATATCATTAGATAAGTTTGTCCCCTCACTTAGTGATATAAGACTTTTGTTGTTGTTGTTGTTGTCAGATATCTATCTG GGATGTTCAAATTTAGGATCATTACTATGGATTTTCTTAAATGTTTTCAGGTTGACCAAGAAAAGAAATGGGGTGAAGTG GTCTCTGCACTAAAATTAGAAGGAAGTAATGCAAAGTTATCTGCTCAAGTTGAAATGCTCTATGCAAATCTTCTTTACGA ATTCGAGCAATTGTACTTCTACAGGTGTCCTACAAAGCAAGCCAGCACCAAAGGTTAATCTAAGAGCTAGTCCAATTTGA AGCTATTTTATTAACTAAATATATTGATTCAGTATGGTGATTAATTTCACACATTTTTTATGTAGTTTCTTTGTAGTTTC TACATAGATGATTATAATCAATCTTTACTGCTTGGACATAAGAGAAGACCTTTCAGTATCTTTATTGTATGAGATTGTTG GTGCATTTTGGTTTTATGATGACTTTTAACCTGACCTGAATGAGTCCTTCTGTTTTATCCACAACCTCACCTTTTCCCAA AGGTCCACTTAAGAGGAAGCGGAATTTAACTCAATTAATGGATAAGGAAAATGTTCAGAGGGTGACAATGTGCAAGGACT ACTCTTCCCAGAAGACAGGTTTGGCTGCATATGTGTACTTATCTGCATACTTTTCAAATCCTAGGTAGGAGAATAGATGA TTTTTTTTTTGGTAACTAGGGGAATTTTACATGACCAATTTTTAAACTCATCCCAATATATTACTTAGTTACGAGTAAAT TAATTGTCAGTACTCTCGGAGTACTCAAGATTCAGTACATCCCTCACAATCTGAGAGAGTCATCCTCATTTTTAAATTTT AGAAAAAAATCAAAATCAGGATAAACTAACAATAAAAGTCAGATGATATGCTTTAAGACGATGGAGTATGTACTACAGGA GTACTGATTATGAATTTGAGGTAATTATGAATTACATTGGTTTGCAACTTACAGCTGAGGGTGGATATGTAGAGCCAGTG CTTCAACCGGCACCTTCAAATGACAAAGGAAGGAAGAAACGCGGAGGTGCTCCAACAGGACGAAGGACTGCATATCAGAT ATTCGTCAAGCAGGAATGTGCTCGATTGAGAGCTTGTAGTGAGGACTCCTTAGATCGCACGAGATTCCTACGCATGGCTA TTGACACATGGAAGAACATGTCTGAGATTGAGAAACAGGTAAATTGAAATAATGAAATTGACATCATATCTGATATTCTT AAAACATTTATCCCTTTTTTTTGCCTTTTAACACCCTTATGTGTTTGCTTGAAATTCTCCACTTCTGATTACTTTTCACG TAGCCATATATGGAGGAAAGCAAGAAGAACAAGGAAAAACACAAGGAGGAGGAAAACAATAAACAGAAGAACGCACAAGA TATGAAGCAAGTAAACAAGCCAACTAGTCAGTGTGGTGATTATTCTGTACCTTCACAGCCTGAGACAGATAACTCAATTG TGAGTGCAGAACTTGGCTTAGCTCTTAAAATGACTTGGGAAGTAATGACTGGAAAAGCACCCGAGGAGTCCTTACAGGAA TGGGATACTTATTTTTCAGAACTAGATTTACCAACTGGTGAATCCAAGTAATTCTACTTACTCTAGTTAATGGTGGGTTG GTCTTTTTGCTCTTTTGAGGCAATGACTATGTATGCATCCAGCAGTTTTCCCTTCTTTTTTTTGACTCAAACCAAGCTAG CTGCTATGTATATATTGTTTTGAAACAGCACAACAGGGTTGGAATGGCTGGATAGCATATGCTTCCGCCTCTTTCAGTAG TAGTGAAGTATGTAAATATTAAACGGTAGTGTA
CDS sequence (LotjaGi1g1v0737100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAAGCGTGGAGAAGAGGACGGTGCTTCCATCAGATAAAACCCATGACTCAGAGTGCTTCTACAAGAATCTCACTGC GTTGTTGGAGTCTTCTGGACTGAGTTTAATTTTGAATGACTTGTACCTGTTTTACTTGGAGGTGACCAAAAGAGGAGGAT ATCATCAGGTTGACCAAGAAAAGAAATGGGGTGAAGTGGTCTCTGCACTAAAATTAGAAGGAAGTAATGCAAAGTTATCT GCTCAAGTTGAAATGCTCTATGCAAATCTTCTTTACGAATTCGAGCAATTGTACTTCTACAGGTGTCCTACAAAGCAAGC CAGCACCAAAGCTGAGGGTGGATATGTAGAGCCAGTGCTTCAACCGGCACCTTCAAATGACAAAGGAAGGAAGAAACGCG GAGGTGCTCCAACAGGACGAAGGACTGCATATCAGATATTCGTCAAGCAGGAATGTGCTCGATTGAGAGCTTGTAGTGAG GACTCCTTAGATCGCACGAGATTCCTACGCATGGCTATTGACACATGGAAGAACATGTCTGAGATTGAGAAACAGCCATA TATGGAGGAAAGCAAGAAGAACAAGGAAAAACACAAGGAGGAGGAAAACAATAAACAGAAGAACGCACAAGATATGAAGC AAGTAAACAAGCCAACTAGTCAGTGTGGTGATTATTCTGTACCTTCACAGCCTGAGACAGATAACTCAATTGTGAGTGCA GAACTTGGCTTAGCTCTTAAAATGACTTGGGAAGTAATGACTGGAAAAGCACCCGAGGAGTCCTTACAGGAATGGGATAC TTATTTTTCAGAACTAGATTTACCAACTGGTGAATCCAAGTAA
Protein sequence (LotjaGi1g1v0737100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSVEKRTVLPSDKTHDSECFYKNLTALLESSGLSLILNDLYLFYLEVTKRGGYHQVDQEKKWGEVVSALKLEGSNAKLS AQVEMLYANLLYEFEQLYFYRCPTKQASTKAEGGYVEPVLQPAPSNDKGRKKRGGAPTGRRTAYQIFVKQECARLRACSE DSLDRTRFLRMAIDTWKNMSEIEKQPYMEESKKNKEKHKEEENNKQKNAQDMKQVNKPTSQCGDYSVPSQPETDNSIVSA ELGLALKMTWEVMTGKAPEESLQEWDTYFSELDLPTGESK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 99 | 99 | 12.905 | ||
| Gene3D | 5 | 114 | 110 | 7.5E-13 | ||
| SMART | 12 | 95 | 84 | 2.5E-8 | – | |
| SUPERFAMILY | 13 | 100 | 88 | 4.06E-16 | ||
| PANTHER | 15 | 108 | 94 | 3.4E-75 | – | |
| PANTHER | 15 | 108 | 94 | 3.4E-75 | – | |
| SMART | 16 | 100 | 85 | 2.0E-4 | ||
| CDD | 21 | 95 | 75 | 3.22943E-15 | – | |
| Pfam | 39 | 95 | 57 | 3.7E-10 | ||
| MobiDBLite | 111 | 140 | 30 | - | – | |
| PANTHER | 118 | 236 | 119 | 3.4E-75 | – | |
| PANTHER | 118 | 236 | 119 | 3.4E-75 | – | |
| SUPERFAMILY | 122 | 202 | 81 | 1.7E-12 | ||
| Gene3D | 124 | 206 | 83 | 2.3E-11 | ||
| Pfam | 137 | 203 | 67 | 9.2E-7 | ||
| ProSiteProfiles | 137 | 206 | 70 | 10.802 | ||
| MobiDBLite | 184 | 234 | 51 | - | – | |
| MobiDBLite | 184 | 208 | 25 | - | – | |
| Coils | 188 | 215 | 28 | - | – | |
| MobiDBLite | 209 | 234 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0737100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…