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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0745900 |
| Transcript ID | LotjaGi1g1v0745900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CASP-like protein; TAIR: AT4G15630.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|A7NW78|CSPL5_VITVI CASP-like protein 1E2; TrEMBL-Plants: tr|G7KQZ0|G7KQZ0_MEDTR CASP-like protein; Found in the gene: LotjaGi1g1v0745900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131908718..131913407) extracted from Lotus japonicus Gifu genome v1.2.
GCCTGCATCAAATACACGTGGCAGAATATGATAGGTAGCTACTTCAGAATAGAGTCAAAGAAATTCAAAATCAGAAGAAA CAATATTTATGGTGCCACTCTCCCTCTTTGTTCTTGGAGTGGAGTGGACACTCTTCACACTCACACTACTCCACCATAGT TGCAGCAGTTTCTGTTCAGAGCACAAAACGCGCACAAGACAGTGCCGTTGAGCTGATTACACTTAGAAGTCGAAGCCTTT ACCTACCCACCATCATAAAACTTCATTCAGGTACATTTCTCTCTTCCTTCTTCGTTTTTACTTTGATTTGCCAAATGGGT ATTTCAAAGTCCGAATCTTTTGTCCTCTTAACAATGAAATCAAGAAGAATTGCCTTGTGGGTTGCCCTGTATTTTGAACT ATTTTGTGTCTTTTTTGTTGTTGTTGTTGCTTTCTTCATACTTTCATTTTTTTACTAGTTTTGGATTTTCGGGATTTGAA AGTTTTCCCACGCGTAGCATTGGTAGTAGCACTGTTGAAAATTGAAATAACGGGAATGGCCTTGTTCGGTGTATCTGTGT GCTGTGTTGACTGTTGAGAATAGCGAAGAGGCAGAGTCAGAGTCAGTCTCTGAGTCACTGAGTCGGTGCATTTGTTTCTT CACGCAAATTCTGATATCTTTGGTGTTTTTCGTTCTTATCATGTCTCTACGTGTGTTTTGAAACAATGTGATTGAGACTT TGCTACTGCTAGGCTAGCTGATAATTATGTTTATGCAACTTTTGGTTTAGGAATTCAAAGGTTATCTTTTGTGGTTTTAA TATTATATGTTTTGTTCTTTTGATAAATAGGAGGAAGTTGGAGATAGACAAGTAAATATTGAAGGAGAAGATGCCTGAAA TAACGAAGAATCAACCCTCACATTGGTGGTTTCTTGATAGCCACAGTAGTACTAAACGATCTCCATGGCTTCAATCCACT CTATCTGGTATTATGCATGTCCTTCTTCTCTCTTCTTCATTATCAATTTGCACTTTGCAGCAATAATTTCTTTTGCTATT GCACTGCAGCACCTTTTATATTCTTTGGTTGATTTGATTCTATAGGCTAATATGCATTTTTGATTGTGTGAAAAATGTTA TTTGAGTTTGCCCTTTAATATAGACCTATAGATTATCTTCATGAATTGCTGAAGTTTTGTCCCCCGGAAATATTACTGTT TTGAGCTAAAGAAAGAGGAACAAATGAACAATAGTGTATAAACACAAAAGAGGTTTTGAGCTACCGTTATGATTTATCTG AGTGTTACTTTCCAAGTTCTTTTCCTTTTTCCACCTTTGGATTTAGCCGTTGGAGTGACCTTTGTTTGGTTTCTTTTTTA CATGTATCTGTTATGTATACCTTTTTGTGCCACATAATGATTTTATTATTAAAGGGGGAAAAGAGACTAGAGCATCTACT TGAGCACTAAGTTTATACACTCGCCTTCTACAATTTACCTATATTACAAACTATTAGCAAGTAGCAACATGATCACATAC CAAAAGGAATAAGTATCACTGGCTTAAGGTTAAGGTATGGTTGAAAGAAGCATATGTTATAAAGGGAAAAGCTATAAACA TCTTTGGTACAAACTATAGACTGGTGTGGAGGTTAAAGGTATAAAAAGGTTATGTGGGAATAGGATTTCGCTGAAGAGAT TAATAGCCTGTTTGGATCAGTGGTGACAGACAATACGGTGACTTAAAGTTACACATTAGCTTTTTCTCATAATTGATTGT GTGTCTTCCAAATGTAGAACCAAACACGTTGTAAACTTATGTGTGACTCTATTGGTATGTTTAATGCAGAGCTAAATGAG AAGACGAAGGCAATTTTAAAGTTAATTGAAGAAGATGCAGATTCCTTTGCCCAACGTGCAGAGATGTACTACAAGAAGCG ACCGGAACTCGTGAGCATGGTTGAAGATTTCTACCGGACACACCGTTCACTAGCTGAGCGGTATGATCAAGTGAAACCTG ACACTGGAATTAGCCATCTCACGACTGGAGGATCACCCTTTGCTTCAGCCAAATATCAAATAGAGAAGCTAATGAGTTTT GCAGATAATGGTTATGATACCTATTCTGAGGATTGTGCTATAGATGAGTATGAGGAATCTGATGTTTATGATCCTGATCA GGAGCAAGAGGAGAGGGCCAAATTTCACAACTTCACAAAAGAAGAGCAAGTTTCATTTGTGGCTTCTGCCAATGAGGAAG TGATGAAGCTGAGGGATGAAATTAAGAGACTCAATGAAGAGACCAAGGTTATCATTAAACTTTATTTATGTTAGTCACAT ATTTTTGAATAATATTGACTAGAATATGACGTTTTGTTTATGTTAGTCACATATTTTTGAAATTGTTGATGCTATTTACA ATTTAAATAGATAATCCTCTTCTCCATCCTATCTACCAGGACGAAGATCTTCTATCATTAAATGATGTTTCAATTTTGTA TTCGTCTAATAAAACGTTGTCAAAAGATATGAGTGAGCTAGTTATTTACTCAAAGAAGTTTGGTTTAATGGAAGGATGCT AATTGCTAGGTGAGGCTTAAGAGTGTGTATAAGGATACTCCACAAGAAGGTTTCTGACTCGATTCTTTGCAAAAAGTATC TCATTGGGGAGGAGATTTACCCATATTGCTCTAAACCTCGGGGTTGTGAAGTTCCCTCTTCATAGTTATTATTCATAAAA AAAGTTACAAATTTCTTTGATGGTTAAAATTTTCAAAAGTATGATGTGTGCATAAGATTCTTAAGAAAATCCAATCGGCA TACAACTCAACGGTGGTTTTTGGTATTCAAACTACCGCAAAATGATATGTTGAATGGACCATCACAAGAAATCGTATGTG CACCTAAAAAATTTATTTGTAAGAGAGAAAATGAGACACAAACTTAATGGTCCAATGCTTAGCTACCTACCTTATATCTA TCCATCTTGAATAATAAATACACATAACGTTCCTTTACATTACACTAGATCCGCACTCTTCCACTAATTCAGTTTAACCT TCCTTTTCCTCTGTTCCATTTCAAAGAACAACACCAAACTCAGTGATCTTGATAAAAAATATGGGAACCCAGTCTAAGCC TGATGTGGACGGTGTCCACAGTGATGTGAAGGTGGTGGAGAAGCCAACAAGGACAAGGCCTTACGATGTGTTGCTTCGAT TTCTTGCACTGTCACTCACTCTGGTGGCTACTATCATTGTGGCGGTTAACAAGGAGACAAAGACCATCTCCTATGCTGGA ATGCAGTTCAAAGCCACTGCTAAGTGGGAATACATGTCTGCTATTGTGTGAGCCTCATTCTCATCTCAGTACTCTTTCAC CAATTTCAAATGCACTCTGTCAAGCAACTCATAAGCATTAGCTTTTAAGATAGTTGTTTCATGATTTGGAATCAAAATAT TATGACTAAATGGTCTAGATTTTAATACTTATTGAGTCATAAAAGAGTTGAATTTCAACCTAGACCTGTTGAAGCTTTCT AGTTTGGTAGTTCATGAAACTTAATACTAGTTCACATGAGATTACATATGTTTCAAATTTAGTGACTAGGTGTGTGCTTG TTTATTCATTTGATTAAATGTGAATGTGTTTTTTCTCAATCCAACAAGTTTGCTATATTGGAAAGTTAAATATGTCTGTT AAATATGATTTCAACTAGAAAACAAACACACTCTAGCTAACATGGCATTGTATATGAAAAAATAGCATTTTTTTATTTGT GATTACTAATGCAATCTTCAATAAATTAGAGTTTGTTTCGATGTCAATTGAAGTATAAAAATCGAAAAGTAACACATTCA AGACACTTTTTGTTGCTATTTCAACAAAAAGTTGTTTCAACTTTCAACATAAATTCTCTCAATGTGTTGCATTCCAGTTT TCATATTTTCTAACGGGTATCCAAGCCGCGGATTGTTAATTAGGTGCCACATTGTTATTTTTCCATTAAAGCTTTAGCAA TCAATATCACCATTTTATCTAAAATAGATTGTGCACCTCAAAGTAAATTTGTTTGTGTATCAGGTTTTTCTTGGTGTCAA ACGCTATTGGATGCTCCTATGCAGCTGCTTCTCTAGCCATCTCAATGGTTTCAAGAACCAGTGGAAACAAAACGGCACCG TTCCTGCTAACAGTGCTGGACCTTGTGATCATGGCGCTTCTGTTCTCAGCCAATGGCGCAGCCGCTGCAGTGGGAGTTAT TGGACAGAAGGGGAACTCGCACGTACAGTGGATGAAAGTGTGCAACGTATTCAACGCTTACTGCAACCATGCCACCGCTG CTCTGGTCCTTTCTCTGATTGGATCCTCTGCTTTTCTCTTGGGGGTGGTGCACTCTGTTTTCAAACTCCATTACAGGTCA AACAAATAGATTAATTAGTACTATAGTTAAGGGTGTGCAATGCATTGGTGTGAATCTTTGTTTAGGAAGAATACCAAGGT CTTTAACCTTGGTGTAAGTTTGTATACATAATTTATTAGGCTTAATTACAACTTTGGTCCCCGACGTTTATCAATTCCAC GATTTTGGTCCCCCACCTAATTTAATTACATGGATGGTCCCCGACGTTGTAGGCTGCGTGCAACGTTAGTCCTACCGTTT ATTTCTTAATGGATGAGGCTTACGTGGACGTCTAGTTGGAGAGAAAAAGG
CDS sequence (LotjaGi1g1v0745900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATTAAGAGACTCAATGAAGAGACCAAGAACAACACCAAACTCAGTGATCTTGATAAAAAATATGGGAACCCAGTC TAAGCCTGATGTGGACGGTGTCCACAGTGATGTGAAGGTGGTGGAGAAGCCAACAAGGACAAGGCCTTACGATGTGTTGC TTCGATTTCTTGCACTGTCACTCACTCTGGTGGCTACTATCATTGTGGCGGTTAACAAGGAGACAAAGACCATCTCCTAT GCTGGAATGCAGTTCAAAGCCACTGCTAAGTGGGAATACATGTCTGCTATTGTGTTTTTCTTGGTGTCAAACGCTATTGG ATGCTCCTATGCAGCTGCTTCTCTAGCCATCTCAATGGTTTCAAGAACCAGTGGAAACAAAACGGCACCGTTCCTGCTAA CAGTGCTGGACCTTGTGATCATGGCGCTTCTGTTCTCAGCCAATGGCGCAGCCGCTGCAGTGGGAGTTATTGGACAGAAG GGGAACTCGCACGTACAGTGGATGAAAGTGTGCAACGTATTCAACGCTTACTGCAACCATGCCACCGCTGCTCTGGTCCT TTCTCTGATTGGATCCTCTGCTTTTCTCTTGGGGGTGGTGCACTCTGTTTTCAAACTCCATTACAGGTCAAACAAATAG
Protein sequence (LotjaGi1g1v0745900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLRDSMKRPRTTPNSVILIKNMGTQSKPDVDGVHSDVKVVEKPTRTRPYDVLLRFLALSLTLVATIIVAVNKETKTISY AGMQFKATAKWEYMSAIVFFLVSNAIGCSYAAASLAISMVSRTSGNKTAPFLLTVLDLVIMALLFSANGAAAAVGVIGQK GNSHVQWMKVCNVFNAYCNHATAALVLSLIGSSAFLLGVVHSVFKLHYRSNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 51 | 51 | - | – | |
| PANTHER | 29 | 210 | 182 | 2.9E-69 | – | |
| PANTHER | 29 | 210 | 182 | 2.9E-69 | – | |
| Pfam | 48 | 192 | 145 | 2.2E-38 | ||
| TMHMM | 52 | 71 | 20 | - | – | |
| Phobius | 52 | 71 | 20 | - | – | |
| TIGRFAM | 53 | 205 | 153 | 1.0E-38 | ||
| Phobius | 72 | 90 | 19 | - | – | |
| Phobius | 91 | 117 | 27 | - | – | |
| TMHMM | 96 | 118 | 23 | - | – | |
| Phobius | 118 | 128 | 11 | - | – | |
| Phobius | 129 | 158 | 30 | - | – | |
| TMHMM | 131 | 153 | 23 | - | – | |
| Phobius | 159 | 182 | 24 | - | – | |
| TMHMM | 182 | 204 | 23 | - | – | |
| Phobius | 183 | 204 | 22 | - | – | |
| Phobius | 205 | 212 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0745900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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