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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0751700 |
| Transcript ID | LotjaGi1g1v0751700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | G-patch domain-containing protein; TAIR: AT5G26610.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|Q9UKJ3|GPTC8_HUMAN G patch domain-containing protein 8; TrEMBL-Plants: tr|I3T461|I3T461_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0751700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132389551..132393898) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAATAGACCCACTCGTATTGACCCAAACCAAATTGAAGAAAACCAAACCACTAAAAAAAATAGCCACTCTCTTTTTT ATTTTCCACACTTAAAAAAAGAAATTGTAAAACATAATTATTATTATATATTTTCCAGTTTCCACATTTGGTTTGATCCT GCAATTCCCTCATATGAAATCTGAATATTTCATGGTGAAGACCGTGCGTTGAAATCAAACAGGGACGAGATCGAAGCAGC GTTGTTCTGTCACAACTTGAGCTCGCTCTTTCTACTATCTCATCAAGGTGGTTCTTTGCTTTCTGAAATTTTAACCATTC CTTAATCTTCGTTTTCTTTTATTTCTTCACCTAGGGTTTTCTGAATCTGATTCAGATTTATGTAGTATTTTTTTGAAACT AGGGCTTTTCTGTGATGGGGGTTTTGGTTAAATTTCAAAAGGGTAGTAGAAAAATCCTATCTTTTCAAATTTGCTTGGTT CGTTAATTCAATTCTATGCAACTTGGACTTCATGCCAATTTGATCAGATTACCTATAACTTGCGTTTTCCGATGTCCTTA TACTAGTGTTGTGATTAAGTTTAGTTGCTGGGTGCCTTTGGTGTAATCATTTTTCATTAAATAGTTTATGATCCGAGTGT GATAGTATTTGTGTGTATTGATTCTGTATGTATCAATCAATGTTGGTTCATGTTGTACTTGTGGAGCTTCTTTTAGTTCT TTTTTTGGCACCTGAATCGAGTATGTAATGCTTACATCTTATGCATGCTTCCTGTTATTTAGGTAGATACAAAATGGATT ATCGAAGGAGCAGTGGTAGGCAGGAAAGTGGGGGCCGTGGCCGGAGACAATTTAAAAAGGAAGAGGTAATCGATATATTT TTCCCGGTTGAGTTGCAATCCCACTTGTTCTGCTCTCTATTACTAGTTGAAGACCTAGGTTATAACCTTTTGTACTGATG ATATGGTGTCTTTAACTCATTGTGGATGCGCAATTGATATCGTGATTTCCATTGTATTGAGATGAATGAATTTGTTTTTT TCAGGCTCATCAGGACTCCCTTATTGGGGATTTGGCAGAGGATTTTCGTTTGCCAATCAACCACAGGCCAACAGAAAATG TTGATCTGGAGAATGTAGAACAAGCATCTCTGGACACACAGTTAACATCGTCTAATATTGGCTTTAAGCTTCTCCAAAAG ATGGGATGGAAAGGAAAGGGTCTTGGGAAGGATGAACAAGGTTTTTCTTTTTCTTTTTCTGTATTACGAAGATCCACATA ATGGATTAATCGTCATTTTAGTTTCTGATATGCTGAATGAATTCTCCTTGACTCCTGTGGAGTATCTTCCCTTCCTCCCT CTATGCAGCCCCCCTTTTCACCTCCTTAGTGTTGTTACTACCGGTTTATTTTTCTAGTTTTTTCTTCCCTTCTCCATTCC TAAGGAAGGAGTGGGTACTGGGTAGAATGAAAGAAAACTATATAAAATGACTTCCAATCTAATTGTGATGCGGATAAACT GACAGACTTCCCCCTTCTAGTATTTCTTTTACTCTCATACCATATAGAAATTTAAAACGTAGACATCAAAGTTTGATGTT TTTGGTCTTTAGGGTGGCTGCTTTCCATAGATCAACACCTTTTAGTTTTTCATCAGCAATGGCAATGATAATTGTGGTTT TTGTTGTCATGTTCCAGTATTTATATAAATGCATATTTTTGTTGGCATACAATAGGGATAATTTTAAATTTGACCTTTAG AACTTTAGTTAATGCTCTGCAAAGTGCACAAGCTTTTGTTTTTCCTTGAAGAAATGTATTTTCTCTAGCTGACTGCTTAA TCACTTAATTTATTGAATCATCTGAGTCTTGCACTTACCTCATTGTAACGAGGAATTTTGGCAATTAGTTTGTTCATTTC TTCCTTTCTTTCAGTATTAATTTTATATGTCCCTACATGTGGGTGCTATTGCTGAAAATGATTCGATTTTGGTGCTTTTT GAGTCTTTTAAGTGCTTTCTTTTGTTTTTTCAAATTGACCTTCTGGACTTTGGGTGCAGGAATCATTGAACCAATCAAAT CTGGTATGAGAGATCCAAGACTGGGGCTTGGTAAACAAGAAGAGGATGACTTTTTCACTGCAGAAGAAAACATCCAGCGA AAAAAACTTGATGTCGAGCTGGAGGAGACAGAGGAAAATGTGAGAAAGCGGGAGGTATGTTTTATAACTCTTAGCGATTT TTCTTAGTGCAAAAATCACATAGTAGTGTCGAGGTTGATGTTTACATTTTCTCAAACCTGCGCATAGTAGCAGAAGGCAG CATATAGCATATATGCATGTCTTTTGACCGGATTGGTCTGTCATAAGGAACCATCAACCTTGGAAGGTCTTGAGAATTTC CTGCAGTTTTTATTACCTGGTGGCTTCTTCTGCCTGCTTCGTGCACATTGAAAATTCAGGTGTTAGCTGAACGTGAGCAA AAAATTCAAACTGAGGTGAAAGAAATCCGAAAGGTGTTCTATTGTGATCTCTGCAACAAGCAATACAAATTGGCAATGGA GTTTGAAGCACATTTGAGCTCTTACGATCACAATCACAGAAAGGTAAACAATTTAACTAACCCTAATTTGGTTTTGCTTT TTGTCAACCTGAGTCCTAAATTGGCTCAATTTACTAATTCAAAATCCTTGATGTTAAATACAGAGATTCAAACAAATGAA GGAAATGCATGGTGGTAGTAGTCGGGACGATAGGCAAAAGCGAGAGCAACAGCGTCAAGAGAGAGAAATTGCTAAGTTCG CTCAAATGTATCTTTTTTCTTGCGTACAAATTTATTTTTATTCCCTCATTGCCCAGTTTCTTTTGGCTACGTGTGGGGTG GTTGGCCACGGTATCCTCTGAGTTTTGATTGACTGCCTTCTTCCCTTGTCATCTTGGTTTCCTTTATGTCAATCAGTGCT GATGCTCAAAAGCAGCAACGGCTTCAACTGCTGCAAGAGTCTGGATCAGAACCAGTTTCCTCTGAAACTAGAACTGCTAC TCCACTTACAGATCAGGAGCAGCGAAATGCTTTGAAGTTCGGGTTTTCTTCTAAAGGAAGTGCTTCCAAGGTATGTCTAC ATGTTATCAAGGGTTTGAAAATGAGCCATAATTTCCTTGTAATATTAGGGAGTTTGGAATGCTTACTGCAACTTTAGTAA ACTTCATAGTCTGAGTACTTGATCTTAACAGTTTCAACTCCACTAATCTATTTAATGTTGCTTTTGCATTGTTACTAAGT CCAGGCTTGTGCCTAAATTTTTATATGCTTGCTAAAATTTTCGTTTTCTCCAATTTCTTGCAGAATGTGATTGGTCCCAA GAGGCAAATGGTTGCAAAGAAGCAGAATATTCCAGTGTCCTCTATATTCAATAACGATAGTGACGAAGAGTAACAGAATC TTATTTTGCAGATCTGAATGAGGATGATGTCATATCCTCTTGCTTAGTTTTGAGTAAAATCAGATGTTTTTATTCAGACT TTGTCACCAATGTCAGTTTAAGAGGGAAAGACATTTGGGTTTCCTTGTTGTTTTGGAGTTGAGTGCAAACTGTATGTTGC AATTTCCTAGTTCTTATCCATGTGTGCTATGATCATGTTTATGTGAGTGTCATGATGATGTTAGTTTCCATTGATGTCAT GTGTGTGTAACATGCTTTAGAAAGTGATCCAACTTTTAGGTTATGTTATATCATAAAATACATTCCTCCATTTTAAAGTT GATGCTAGTAATCAATCATGTAAGACACGTTGCAATTATGTATGTAATCTATTCCTCACAAATTATAACACTTTATTGGA CTTAATTAGGATAGATAGAATGAAATTCAAAAAAAAAAATTAGGATAGATAGAACACTGCCCAACTGGTAATAGAATGAT AGAATATTATAGGCAAAAAAAGAAGAAAACAAAACATCTTCATTTCTTTCTTCTTCACTTGGTTAGCAATGAAAAACATT CACTAAGTTAGCAATATAAAATCCTAGGTGATTTCTCTCCGAAAATATTCTAACAGACAAATGTTTATTATTCATTCATT GAAGGATTTTTCTGATCAGGAATCTTGGTTGATTGGGATAATAAAAGCGTTGTGTAGCTTAATTAATGTTTTTTGATGTT GCTATCAACGAGTTCTTGAGCATGTAGAGGATTCCAATCATTCCATGTAGCAAGCAATTCCTCTATTTGGGGGTGGCACT GTTGGATTGAATGAAAGAATGTCTCAAGTTGAGGATTTGAGCATCAAACTCACAGAATCTCAAGATTGCAAGAGAAAGGA AATAATGGAATTGCACTACATGGATTTA
CDS sequence (LotjaGi1g1v0751700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTATCGAAGGAGCAGTGGTAGGCAGGAAAGTGGGGGCCGTGGCCGGAGACAATTTAAAAAGGAAGAGGCTCATCA GGACTCCCTTATTGGGGATTTGGCAGAGGATTTTCGTTTGCCAATCAACCACAGGCCAACAGAAAATGTTGATCTGGAGA ATGTAGAACAAGCATCTCTGGACACACAGTTAACATCGTCTAATATTGGCTTTAAGCTTCTCCAAAAGATGGGATGGAAA GGAAAGGGTCTTGGGAAGGATGAACAAGGAATCATTGAACCAATCAAATCTGGTATGAGAGATCCAAGACTGGGGCTTGG TAAACAAGAAGAGGATGACTTTTTCACTGCAGAAGAAAACATCCAGCGAAAAAAACTTGATGTCGAGCTGGAGGAGACAG AGGAAAATGTGAGAAAGCGGGAGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAGGTGAAAGAAATCCGAAAGGTG TTCTATTGTGATCTCTGCAACAAGCAATACAAATTGGCAATGGAGTTTGAAGCACATTTGAGCTCTTACGATCACAATCA CAGAAAGAGATTCAAACAAATGAAGGAAATGCATGGTGGTAGTAGTCGGGACGATAGGCAAAAGCGAGAGCAACAGCGTC AAGAGAGAGAAATTGCTAAGTTCGCTCAAATTGCTGATGCTCAAAAGCAGCAACGGCTTCAACTGCTGCAAGAGTCTGGA TCAGAACCAGTTTCCTCTGAAACTAGAACTGCTACTCCACTTACAGATCAGGAGCAGCGAAATGCTTTGAAGTTCGGGTT TTCTTCTAAAGGAAGTGCTTCCAAGAATGTGATTGGTCCCAAGAGGCAAATGGTTGCAAAGAAGCAGAATATTCCAGTGT CCTCTATATTCAATAACGATAGTGACGAAGAGTAA
Protein sequence (LotjaGi1g1v0751700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDYRRSSGRQESGGRGRRQFKKEEAHQDSLIGDLAEDFRLPINHRPTENVDLENVEQASLDTQLTSSNIGFKLLQKMGWK GKGLGKDEQGIIEPIKSGMRDPRLGLGKQEEDDFFTAEENIQRKKLDVELEETEENVRKREVLAEREQKIQTEVKEIRKV FYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGGSSRDDRQKREQQRQEREIAKFAQIADAQKQQRLQLLQESG SEPVSSETRTATPLTDQEQRNALKFGFSSKGSASKNVIGPKRQMVAKKQNIPVSSIFNNDSDEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 35 | 35 | - | – | |
| PANTHER | 10 | 304 | 295 | 1.6E-138 | – | |
| SMART | 64 | 109 | 46 | 3.6E-18 | ||
| ProSiteProfiles | 66 | 111 | 46 | 16.887 | ||
| Pfam | 67 | 107 | 41 | 1.4E-15 | ||
| Coils | 116 | 143 | 28 | - | – | |
| SUPERFAMILY | 141 | 196 | 56 | 2.54E-5 | ||
| Pfam | 161 | 188 | 28 | 1.7E-5 | ||
| ProSitePatterns | 163 | 185 | 23 | - | ||
| MobiDBLite | 194 | 216 | 23 | - | – | |
| MobiDBLite | 237 | 259 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0751700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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