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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0752000 |
| Transcript ID | LotjaGi1g1v0752000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G22070.1 pentatricopeptide (PPR) repeat-containing protein; Swiss-Prot: sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070; TrEMBL-Plants: tr|V7D0V7|V7D0V7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0752000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132438896..132443460) extracted from Lotus japonicus Gifu genome v1.2.
GTGAAGCATGATTATTCAATCTTTGTCCAAAAAAACAGTGAAGTATGATTTATTTAGTACATTGTCATGCTCATCATCTG TCTCTAGAGTGCTACTATGAAACTTCGCTTGCCACTGTTACAGTTTGTTAGCCATGGAAATCCAGCTCCTAAATTCTACT CAGCTGCACCAAACAACGTGGTCACTTGGACCACCCTCATCACCCAACTCTCTCGTTCCAACAAACCATTCCATGCCCTG AACTCTTTCAACCGCATGAGAGCCGCCGGAATATACCCCAACCACTTCACCTTCTCAGCCATCTTACCCGCATGTGCCAA TACCCTGATCCTCATCCACGGTCAGCAAATGCACGCATTGATTCATAAACACTGCTTCGACACGGATACATTTGTAGCCA CCGCGTTACTTGACATGTACGCTAAATGTTGTCACATGTTATTTGCAGTGAAGGTGTTCGATGAAATGCCCCACAGGAGT CTCGTTTCCTGGAACGCGATGATTGTGGGGTTCTTGAGAAACAAGTTGTATGTCCGTGCCATTGGGATTTTCAGGGAGGT TCTCCGAGATGCTGCCCTTGACCCGGATGAAGTCAGTTTCTCGAGCGTGTTGAGTGCTTGTGCAAGTGTCGTTGACTTGG GGTTTGGGATGCAGGTGCATGGGAACATCGTGAAGCGTGGTTTGATCGTGTTGGTTTATGTGAACAACTCGCTTGTGGAC ATGTATTGCAAGTGTGGGTCGTTTGATGCTGCAAACAAGCTGTTCGACGCTGCTGGAGATAGAGATATTGTTACCTGGAA TGTGATGATCGTGGGGTGCGGACGTAGCGAAAACTTTGAACAAGCTTGGAGCTTTTTCCGGGCCATGAAAAGGGAAGGTG TGGTGCCCGACGAGGCCTCGTGCTCATCCCTTCTTCATGCTTCTGCAAGTGTTGCGGTGTTGGCACAGGGCACCTTGATC CATAACCATGTCTTAAAAACTGGGTACTTGAAAAACGCTTGTGTTTTGAGTTCATTGGTGACAATGTATGGCAAATGTGG GAACTTGTTTGATGCTTATCGGGTTTTTCAAGAAATAGAGAACTGTAATGTGGTTTGTTGGACAGCAATGATTGCAGTTT GTCACCAACATGGCTGCGCAAATGAAGCGATTGAGTTATTTGAAGAGATGCTCAGAGAGGGGGTTGTGCCAGAATACATT ACATTTGTTTCTGTGCTGTCAGCATGCAGCCATACAGGCCTGGTAGATGATGGTTTTAAGTACTTCAATTCCATGGTTAG CGTCCATAATATTAAACCTGGACCAGAACATTATGCATGCATGGTTGATTTGCTTGGTCGTGTCGGTCGATTGGAGGAAG CATGCAACTTTATTGAATCGATGCCAATCAAGCCTGACTCCTCAGTTTGGGGGGCTTTGCTGGGGGCATGTGGAAAATAT GCTGATGTTGAAATGGGAAGAAAGGTTGCTGAGAGGCTTTTCAAGTTGGAACCGGATAATCCAGGAAATTATAGGCTACT TTCAAATATCTATACACGGCATGGAATGTTGGAAAAGGCTGATGAAGTGAGGCAATTGATGGGGATTAATAGGGTAAGGA AAGAGACTGGATGTAGCTGGATTGATGTTAAGGACAGGACCTTTGTGTTCACTGTGAATGATAGGTCACATTCAAGGACA GATGAGATTCATGAAATGTTGCAGAAGTTGAAGGAGTTGATAAAGAAGAGAGGATATGTGGCTGAGACTCAGTTTGCAAC AAACATTGTAGAAGGGACTGAAGAGCAGAGTTTGTGGTATCACAGCGAGAAGTTAGCTCTTGCATTTGGTCTTCTGGTCC TCCCAGTTGGATCTCCAGTAAGGATAAAGAAGAATTTGAGGACTTGTGGCGATTGTCACACTGTTATGAAGTTTGCTTCA GAGATTTTTAAGAGAGAGATTATTGTAAGAGATATCAACAGGTTTCACCGATTCACAAATGGGCTGTGCTCTTGTAGAGA CTATTGGTGAGTGAAACACACGCAACTGAACAAACCCAACTCCTTACTTTTGGAAGCTGCCACTGAGCTCCCAATATTAT TTGCAATTCCTCCCCTGTTGTTGGCTATTGGCAATTGTGCTTTCTGGGGAGAGACTTAGGATTAACACAACTCTATGAAA GTGCGGAGAATCGAGGAAAAATACGGCTGATGTGTCCACAATTACGGTGGCAATGTGGTTGCAGAGACCTCAAAAACCTC GATGTCGCGGTTGCAATCGTGATCTCAGATCTTGATTAAAAAACACGGTAACATAACAACTGATAGCTGAATCTGTACAG ATTTTCTGTGCTATATTGTTTTTTGATAGATCAATTTAGGAACTAGCATTTTTTATTTATTTAATATATTGATACATCTA GGATGAGATTATAATTCCATGAGGTAAGTTAGACAACTTCATGGTATGATAGTAGTTTCATTCATTGAATTCAAAATTAT GTGTGTTCTCTCCAAATTTCTAATTGTTTTGCAAGTAGTTAGGATACTCAACCTAGCCTTCAAAACCAGTATCAGAGTGA AGATGCTTTCCTTTGCGGGAGATCCCTCTTAAGTCTAGGATCCATCCTTTCATCTCCTCTATCTCCAATGGTTTTAATTG TTTATTACAGCATCTCAATTTTACTATTAGTAGGAAATTTTTGCTCATTAATGATTCATTCAAGTGAGTGTTACAGTTTC ACCCTGCCTTACCAGCTTCTACTCTTCCACCTGGTCAGGCTGAGATTTATCTTATTACTCTTTTGCGGGTTCGCCTGACA TAATGTGCTGTGTAAAGCTTCCGATTGTGGTCGAGCTAGAGTTATCAAATCCGGTTTGTACACGGTCCTCCAAGTCCTAA GCATTTTGCTTAGTGGACTTGTATGCCCGAACTAGAGTTATCAAACCCTGTATGTACAATGAGCATACCATAATTGACTT TAGTTTTCAATAGCAACTTCTTCTCGATATTTTCCAGTTGATTGTTGTTTTGGCTGCACCTTGTCAGTTGAGTTAGTTTT CTCTTCATCACAAACCTCAAAACATCATGTGCGGGATGATATAAAAAGAGTATGTGAGGGATTCTCATCTTTGAAAAATG ACAAAGTTTTTAGTTCTTTAATGCAGTGGTTCTGTTTTCTTTAGAGCACATAAGAAAAGATGTATAGTACAATTCTCTAA AGTGGGATGGTTCTAGGCATTCTTGGTGATGGTGAGACGAAACTAGATATTGTCTTTTCAACATTAACAATTCTAACGAT GGCACTGCTATTGTTTAATAACGAGACGAAACTAGATATTGTCTTTTCAACATTAACAATTCTAACGATGGCACTGCTAT TGTTTAATAACGACATCTGTAATATTGTTATTTTTTCTTTGGTGAGAGTAATATTGTTCTTAATTAAGGCCTCTGAAACA GAAACTCTAGTTTATATAGTGGCTAAAACATTATTAAATTGTTCTTACCACCATAGGTGATATATTTGCAATATTGTTTT ATAATAAATTGTTAAATGTTAAGAGCTACTCTCCGTCTCGGACATGGAGTATTCAGATTGTTAGCGCATTCATTGAGCTT TGAATGTGCACTTTGTTTTATTTTTACAATTCCTCATATGGAATTGTATCATTTTAACATTTGATTAATATGCCCTTGTT TTTTATAGGTGAAGATGTTAGGAGCCTTCTTCAAGGCATTGAAACATGACAATGAAGTAGCGTCGAGATTTTTGGATTTG ATGCCAATGATGTTTTAGTTGATGATAATTATAAGAAGCTCGAGTGTGGTCAATCTCCATTTCCTTATCATAGTTAAGGT AGGAGAAGAAATGAAGCTTTGCTTGCAAAAGGCGTTGTGGCGTCGGCAATCTGACAGGGTTTGTTATTTTTGTTTGCTCA ATACTTTTTGAACTGTTAGATTTACATAGAAATTCTTTATTCACAGAGGCTGGAGAGATTCTTAGGTCACCAATTCAGAG AAGCTGGAGAAATTCTTTCTCCAATAGAAAGTACTTTATTATATTTTGAATAGGTTGGGGCTGTCAACCAAAAACTAGCT TATTCCAAGGGTATTATCAATCTCTATTCATGATTCAACTTTTAACTGTGACACACCTGTATATGTGAAATATAAATTTT TGTTTGATGGTTGTGACTGGGGGTTCTAGAGATTGCTTGTGGCTTCTTCATGATGTATTATCTGTCGGTTGTGCCCTTTT GCATTTGGAGGTAATTTTAGGGTGCACCCTTTTGCATTTGGCAATAGAGAGTAGCCCAGCAAAATTCCATTTGTTCCATC CGTTTTTTGTTTGTCCAACCATTTCTTCCGCTCTGTTGTAAGACTAAGCACAGGGCTTTTTGTCCATATAAAGAGTATGG GCTATCAAACTTTTTCTGTTGATGGTTATTAGCCATCTTTTTACATTTTGAGCATCACATTGTAGAGGATGCTCACTAAT CACCAGTGATACACATTATAGATATTTTTTTGTCTGGATTCCATATTATATTGCCTTTTGAAAATCATGCATAGGTATGT TTAGG
CDS sequence (LotjaGi1g1v0752000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACTTCGCTTGCCACTGTTACAGTTTGTTAGCCATGGAAATCCAGCTCCTAAATTCTACTCAGCTGCACCAAACAA CGTGGTCACTTGGACCACCCTCATCACCCAACTCTCTCGTTCCAACAAACCATTCCATGCCCTGAACTCTTTCAACCGCA TGAGAGCCGCCGGAATATACCCCAACCACTTCACCTTCTCAGCCATCTTACCCGCATGTGCCAATACCCTGATCCTCATC CACGGTCAGCAAATGCACGCATTGATTCATAAACACTGCTTCGACACGGATACATTTGTAGCCACCGCGTTACTTGACAT GTACGCTAAATGTTGTCACATGTTATTTGCAGTGAAGGTGTTCGATGAAATGCCCCACAGGAGTCTCGTTTCCTGGAACG CGATGATTGTGGGGTTCTTGAGAAACAAGTTGTATGTCCGTGCCATTGGGATTTTCAGGGAGGTTCTCCGAGATGCTGCC CTTGACCCGGATGAAGTCAGTTTCTCGAGCGTGTTGAGTGCTTGTGCAAGTGTCGTTGACTTGGGGTTTGGGATGCAGGT GCATGGGAACATCGTGAAGCGTGGTTTGATCGTGTTGGTTTATGTGAACAACTCGCTTGTGGACATGTATTGCAAGTGTG GGTCGTTTGATGCTGCAAACAAGCTGTTCGACGCTGCTGGAGATAGAGATATTGTTACCTGGAATGTGATGATCGTGGGG TGCGGACGTAGCGAAAACTTTGAACAAGCTTGGAGCTTTTTCCGGGCCATGAAAAGGGAAGGTGTGGTGCCCGACGAGGC CTCGTGCTCATCCCTTCTTCATGCTTCTGCAAGTGTTGCGGTGTTGGCACAGGGCACCTTGATCCATAACCATGTCTTAA AAACTGGGTACTTGAAAAACGCTTGTGTTTTGAGTTCATTGGTGACAATGTATGGCAAATGTGGGAACTTGTTTGATGCT TATCGGGTTTTTCAAGAAATAGAGAACTGTAATGTGGTTTGTTGGACAGCAATGATTGCAGTTTGTCACCAACATGGCTG CGCAAATGAAGCGATTGAGTTATTTGAAGAGATGCTCAGAGAGGGGGTTGTGCCAGAATACATTACATTTGTTTCTGTGC TGTCAGCATGCAGCCATACAGGCCTGGTAGATGATGGTTTTAAGTACTTCAATTCCATGGTTAGCGTCCATAATATTAAA CCTGGACCAGAACATTATGCATGCATGGTTGATTTGCTTGGTCGTGTCGGTCGATTGGAGGAAGCATGCAACTTTATTGA ATCGATGCCAATCAAGCCTGACTCCTCAGTTTGGGGGGCTTTGCTGGGGGCATGTGGAAAATATGCTGATGTTGAAATGG GAAGAAAGGTTGCTGAGAGGCTTTTCAAGTTGGAACCGGATAATCCAGGAAATTATAGGCTACTTTCAAATATCTATACA CGGCATGGAATGTTGGAAAAGGCTGATGAAGTGAGGCAATTGATGGGGATTAATAGGGTAAGGAAAGAGACTGGATGTAG CTGGATTGATGTTAAGGACAGGACCTTTGTGTTCACTGTGAATGATAGGTCACATTCAAGGACAGATGAGATTCATGAAA TGTTGCAGAAGTTGAAGGAGTTGATAAAGAAGAGAGGATATGTGGCTGAGACTCAGTTTGCAACAAACATTGTAGAAGGG ACTGAAGAGCAGAGTTTGTGGTATCACAGCGAGAAGTTAGCTCTTGCATTTGGTCTTCTGGTCCTCCCAGTTGGATCTCC AGTAAGGATAAAGAAGAATTTGAGGACTTGTGGCGATTGTCACACTGTTATGAAGTTTGCTTCAGAGATTTTTAAGAGAG AGATTATTGTAAGAGATATCAACAGGTTTCACCGATTCACAAATGGGCTGTGCTCTTGTAGAGACTATTGGTGA
Protein sequence (LotjaGi1g1v0752000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLRLPLLQFVSHGNPAPKFYSAAPNNVVTWTTLITQLSRSNKPFHALNSFNRMRAAGIYPNHFTFSAILPACANTLILI HGQQMHALIHKHCFDTDTFVATALLDMYAKCCHMLFAVKVFDEMPHRSLVSWNAMIVGFLRNKLYVRAIGIFREVLRDAA LDPDEVSFSSVLSACASVVDLGFGMQVHGNIVKRGLIVLVYVNNSLVDMYCKCGSFDAANKLFDAAGDRDIVTWNVMIVG CGRSENFEQAWSFFRAMKREGVVPDEASCSSLLHASASVAVLAQGTLIHNHVLKTGYLKNACVLSSLVTMYGKCGNLFDA YRVFQEIENCNVVCWTAMIAVCHQHGCANEAIELFEEMLREGVVPEYITFVSVLSACSHTGLVDDGFKYFNSMVSVHNIK PGPEHYACMVDLLGRVGRLEEACNFIESMPIKPDSSVWGALLGACGKYADVEMGRKVAERLFKLEPDNPGNYRLLSNIYT RHGMLEKADEVRQLMGINRVRKETGCSWIDVKDRTFVFTVNDRSHSRTDEIHEMLQKLKELIKKRGYVAETQFATNIVEG TEEQSLWYHSEKLALAFGLLVLPVGSPVRIKKNLRTCGDCHTVMKFASEIFKREIIVRDINRFHRFTNGLCSCRDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 17 | 77 | 61 | 1.0E-8 | ||
| PANTHER | 20 | 81 | 62 | 1.7E-110 | – | |
| ProSiteProfiles | 27 | 61 | 35 | 10.26 | ||
| Pfam | 27 | 74 | 48 | 1.7E-9 | ||
| TIGRFAM | 29 | 62 | 34 | 3.4E-4 | ||
| Gene3D | 78 | 183 | 106 | 4.3E-16 | ||
| PANTHER | 82 | 183 | 102 | 1.7E-110 | – | |
| ProSiteProfiles | 97 | 127 | 31 | 7.136 | ||
| Pfam | 102 | 127 | 26 | 0.079 | ||
| ProSiteProfiles | 128 | 163 | 36 | 8.177 | ||
| Pfam | 130 | 157 | 28 | 0.0019 | ||
| ProSiteProfiles | 164 | 198 | 35 | 7.037 | ||
| PANTHER | 183 | 286 | 104 | 1.7E-110 | – | |
| Gene3D | 184 | 283 | 100 | 4.7E-21 | ||
| ProSiteProfiles | 199 | 229 | 31 | 7.07 | ||
| Pfam | 204 | 224 | 21 | 0.024 | ||
| ProSiteProfiles | 230 | 264 | 35 | 13.263 | ||
| Pfam | 230 | 275 | 46 | 1.7E-12 | ||
| TIGRFAM | 232 | 266 | 35 | 1.4E-9 | ||
| PANTHER | 270 | 495 | 226 | 1.7E-110 | – | |
| Gene3D | 284 | 383 | 100 | 1.4E-20 | ||
| SUPERFAMILY | 295 | 490 | 196 | 7.59E-6 | ||
| ProSiteProfiles | 300 | 330 | 31 | 7.256 | ||
| ProSiteProfiles | 331 | 365 | 35 | 12.003 | ||
| Pfam | 331 | 378 | 48 | 1.7E-9 | ||
| TIGRFAM | 333 | 365 | 33 | 6.3E-6 | ||
| ProSiteProfiles | 366 | 401 | 36 | 7.267 | ||
| TIGRFAM | 368 | 401 | 34 | 0.0016 | ||
| Gene3D | 384 | 576 | 193 | 6.3E-15 | ||
| ProSiteProfiles | 402 | 432 | 31 | 7.092 | ||
| Pfam | 406 | 429 | 24 | 0.52 | ||
| ProSiteProfiles | 434 | 464 | 31 | 6.182 | ||
| ProSiteProfiles | 468 | 502 | 35 | 6.939 | ||
| Pfam | 474 | 495 | 22 | 1.4 | ||
| Pfam | 505 | 626 | 122 | 1.2E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0752000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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