Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0757600 |
| Transcript ID | LotjaGi1g1v0757600.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase, putative; TAIR: AT3G62310.3 RNA helicase family protein; Swiss-Prot: sp|Q9LZQ9|DEAH2_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2; TrEMBL-Plants: tr|I1NBE6|I1NBE6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0757600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133077943..133081859) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGCACCGAGAGAAAGAGGAAGGTGAGCTTGTTCGATGTGGTTGACGACGCTGCCGCTAAGTTAGTCAAATCCAATGG CGGCGCCGCCAACAACAGTCTCATCAATCACTGGAATGCAAGACCTTACTCCCAGAGGTACTTTGATATTCTCGAGAAGA GGAAGACCCTCCCCGTTTGGCACCAGAAAGAAGACTTTTTGCTCACTTTGAGGAACAACCAAACTTTGATCCTTGTTGGT GAGACTGGTAGTGGCAAAACCACCCAGGTTTGTTCCTTTGGGTTCAGCTTCTGTTAATGATTGATGGGTATTTGGTCTTT AAGTTTATTATCAATTGTATATGTATTATTTTCAATCTTATGATTGTGGAGGTCATTACTTATTGAAGAGTTTGGTTTCA GTAAGTGTTGTTTAGTTTTGATGTGTGGTTAGTAAATTGATGGAACTTTAGTTTTGACACAAACCATACATGTCTAAATT TCAAAGTATGTAATGTACCAGAAATAATTTTTGTAGAGATTGGGTTATAGGATTACTTGGAAATTTCAAACATGAATCAG CCATTGTTAATATGAGTCAAGCATGGTTAGAAATGGTACAGTTTTAGTGAGGAAGAGAAACTACTCGGTTCTAGAACAGT TGCTCTGTGTGACTGTGTGTCTGTGTCAGTGTTGTGGGGTGATTGCACATGAATGTTGTAATGGCAAATGCATTCATTAT CTTGGTTCCTTGGTTGTATATCTCTAACTTACTATCATTTGCTTTAAAATAATTTTCTGGGTGACAGATCCCTCAGTTCG TTTTGGATGATGTTGTTTTGGAAAGTCCTGATAAACGTAAGAAGATGATGGTTGCGTGCACTCAGCCTCGGAGAGTGGCT GCAATGTCTGTTTCGCGGCGTGTGGCTGAAGAGATGGATGTAACTATTGGGGAAGAGGTTGGTTACAGTATAAGATTTGA AGACTGTAGTAGTGCGAAGACAGTTTTGAAGTATGTTAAGTTTTACAATTAAATTACTTTCTATTGTTAATGACTAATTC AGTGCTTGATATGCATTTGTTTTCATGCTTCTCTTTTGGCTCTCTTTTATCGGGTCTCAAGTGAAATACTTTGTCTCGCA GGTATCTCACTGATGGTATGCTCTTGAGAGAAGCAATGACAGATCCACTTTTGGAACGATACAAAGTTATTATTCTTGAT GAGGCTCATGAAAGGACTTTGGCTACAGATGTGCTATTTGGTCTTCTCAAAGAAGTGCTTAAAAATAGACCTGACTTGAA GTTGGTTGTCATGAGTGCAACACTTGAAGCTGAAAAGTTTCAGGGCTATTTTTTTGGTGCCCCTCTAATGAAAGTTCCTG GAAGGCTACACCCTGTTGAAATTTTCTATACACAAGAACCCGAGAGGGATTACTTGGAGGCTGCTATTAGGACAGTGGTA CAAATACACACATGTGAACCTCCTGGGGATATACTCGTATTTCTTACTGGAGAAGAAGAGATAGAAGATGCATGCCGCAA AATATCAAAAGAAGTTTCTAATCTGGGAGACCAGGTGGGCGCTGTGAAAGCGGTACCCCTGTATTCCACTCTTCCTCCAG CTATGCAGCAGAAGATTTTTGAGCCAGCTCCACCTCCACTGAAGGAGGGTGGCCCCCCTGGAAGGAAGATTGTGGTATCA ACAAACATAGCAGAAACTTCCTTAACAATTGATGGTATTGTCTATGTTATTGACCCTGGTTTTGCTAAGCAGAAGGTTTA TAACCCACGAGTGCGTGTGGAGTCTCTATTAGTGTCACCAATATCGAAAGCCAGTGCACACCAGAGATCAGGGCGTGCTG GAAGAACACAACCAGGGAAATGTTTTAGACTTTATACTGAGAGAAGTTTCAATAATGATCTTCAGCCACAGACCTATCCT GAGATTTTGAGATCCAATCTTGCCAACACAGTTCTTACTTTGAAGAAACTGGGTATAGATGATTTGGTGCATTTTGATTT CATGGACCCTCCTGCCCCTGAGACCTTAATGCGTGCATTGGAAGTCTTGAATTATTTGGGCGCACTTGATGACGAAGGGA ACTTAACAAAACTGGGTGAAATTATGAGTGAATTTCCCTTGGATCCACTGATGTCAAAGATGCTCGTAGTTAGTCCTGAA TTCAACTGTTCAAACGAGATGCTTTCAATTGCTGCCATGCTTTCAGGTATTATTCTTTTATCTTGTTGCTTTTGTGTCAG TCCAATGTCCTACCACAATATTAGGGGAATGTAGTTTTATGGGCTCCATTTTGAAATGGATTTCCTGCATATTTACATGC GCAAAGGGATAATCTTGTGTATATGATGGGGCATGTTTGACTGCTTGCACATGTGCTTAGTGGCACATTATTGTGTCAGT GGAGCATCCTGTTAGGTTGTCATCAGCAATTGTTTTCTCTGGGTTACATGCCCCCGGTTGGCATGCACCATAGGATTCTA AGCAAGTGCTGATGCTGTTAGTTTCAATTTCTTAGTATTTTCTCATGAAGCAATTGGTGTGGTGTAGACTCTATGCATCT GCTGACCTACCGTGGGCATCCTCTGTGATAATCAATTTCTTTCTTTAGTACCCAATTGCTTTGTCCGGCCTAGGGAGGCA CAAAAAGCTGCAGACGAGGCTAAAGCTACGTTTGGGCACATTGATGGAGATCATCTCACGCTCTTGAATGTCTACCATGC GTACAAACAAAATAGTAAGTGCTTATTTCTGCTAAATTTTCTTTTAAAAAATAAAAATAAAACAGTGCTGCTGAGATATT TTCTCGGTTTTGGCTGCTTTAAAGTGAGATATACACTTTAGACGATGCAGTGCATAATTATATCTATTAATAGAAACATC AATGGTTGAGATTTTAACAACAACATAGTTAAAAATTTGCACATATTTTATCACAATTTTAACCATTAATTTATTGATGA GCAATTATATTTTAGAGGAACCAAATCGTGTTCTCTGATCTTAAGTTTATTAATTGTATCTCAATGTTTTTTTCAGATGA GGATCCCTCTTGGTGCTACGATAACTTCGTTAATCACAGGGCATTGAAATCTGCTGATAATGTTAGGCAACAACTATTGC GCATCATGGGCCGATTTAACCTGAAGTTATGCAGCACTGACTTTAATAGTCGTGATTACTATGTCAACATAAGAAAGGCT ATGCTTTCTGGATATTTCATGCAGGTAGCTCATCTGGAGCGTACAGGACACTACTTGACAGTGAAAGACAACCAGGTTTA TAATGAGCTGTTATTTGTCTTTATGTCATCTTCTTCATCTTTCTTTGTACTAGCAAAAGAGCTAGACTTTCAGCTCTACT ATTGTGTTTTGATGGTTTCCATTGATTCTATTATTCTTGTAGGTGGTGCATTTGCATCCTTCAACTTGCCTGGACCACAA GCCTGAATGGGTTATATATAATGAATATGTTCTTACCAGTCGAAATTTCATTCGTACTGTGACAGACATACGTGGGGAAT GGTAAGATATTTTCTCTCTGAATTATTGATGTTTCTAGCGTCTAGCTGGTAAAGCGACAAATGCTTGTTATGCTTGATAT TAGGTGAAGATGAGACTGTGAACCTATATGTTAAATGAAAATGATAACTGAGGGATGAGAAACTTTGAATATGATTGTAA AGCACACAAATAGATTTTACTGGGGAGAATAGTGTTACGGTTTTTCTTTGATTTGATATAGCTTTCCTAGTTCTTGCTTT ATGATCATCCCAATTTTTCATCTGAAACAGGTTGGTTGACATAGCACCACATTACTATGATTTGACAAATTTTCCACAAT GTGAGGCAAAGCGTGTTCTTGAGAAACTTTACAAGAAGCGAGAGAAGGAAAAGGAGGAAACCAGGAGCCGCAAATGA
CDS sequence (LotjaGi1g1v0757600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCACCGAGAGAAAGAGGAAGGTGAGCTTGTTCGATGTGGTTGACGACGCTGCCGCTAAGTTAGTCAAATCCAATGG CGGCGCCGCCAACAACAGTCTCATCAATCACTGGAATGCAAGACCTTACTCCCAGAGGTACTTTGATATTCTCGAGAAGA GGAAGACCCTCCCCGTTTGGCACCAGAAAGAAGACTTTTTGCTCACTTTGAGGAACAACCAAACTTTGATCCTTGTTGGT GAGACTGGTAGTGGCAAAACCACCCAGATCCCTCAGTTCGTTTTGGATGATGTTGTTTTGGAAAGTCCTGATAAACGTAA GAAGATGATGGTTGCGTGCACTCAGCCTCGGAGAGTGGCTGCAATGTCTGTTTCGCGGCGTGTGGCTGAAGAGATGGATG TAACTATTGGGGAAGAGGTTGGTTACAGTATAAGATTTGAAGACTGTAGTAGTGCGAAGACAGTTTTGAAGTATCTCACT GATGGTATGCTCTTGAGAGAAGCAATGACAGATCCACTTTTGGAACGATACAAAGTTATTATTCTTGATGAGGCTCATGA AAGGACTTTGGCTACAGATGTGCTATTTGGTCTTCTCAAAGAAGTGCTTAAAAATAGACCTGACTTGAAGTTGGTTGTCA TGAGTGCAACACTTGAAGCTGAAAAGTTTCAGGGCTATTTTTTTGGTGCCCCTCTAATGAAAGTTCCTGGAAGGCTACAC CCTGTTGAAATTTTCTATACACAAGAACCCGAGAGGGATTACTTGGAGGCTGCTATTAGGACAGTGGTACAAATACACAC ATGTGAACCTCCTGGGGATATACTCGTATTTCTTACTGGAGAAGAAGAGATAGAAGATGCATGCCGCAAAATATCAAAAG AAGTTTCTAATCTGGGAGACCAGGTGGGCGCTGTGAAAGCGGTACCCCTGTATTCCACTCTTCCTCCAGCTATGCAGCAG AAGATTTTTGAGCCAGCTCCACCTCCACTGAAGGAGGGTGGCCCCCCTGGAAGGAAGATTGTGGTATCAACAAACATAGC AGAAACTTCCTTAACAATTGATGGTATTGTCTATGTTATTGACCCTGGTTTTGCTAAGCAGAAGGTTTATAACCCACGAG TGCGTGTGGAGTCTCTATTAGTGTCACCAATATCGAAAGCCAGTGCACACCAGAGATCAGGGCGTGCTGGAAGAACACAA CCAGGGAAATGTTTTAGACTTTATACTGAGAGAAGTTTCAATAATGATCTTCAGCCACAGACCTATCCTGAGATTTTGAG ATCCAATCTTGCCAACACAGTTCTTACTTTGAAGAAACTGGGTATAGATGATTTGGTGCATTTTGATTTCATGGACCCTC CTGCCCCTGAGACCTTAATGCGTGCATTGGAAGTCTTGAATTATTTGGGCGCACTTGATGACGAAGGGAACTTAACAAAA CTGGGTGAAATTATGAGTGAATTTCCCTTGGATCCACTGATGTCAAAGATGCTCGTAGTTAGTCCTGAATTCAACTGTTC AAACGAGATGCTTTCAATTGCTGCCATGCTTTCAGGTTGTCATCAGCAATTGTTTTCTCTGGGTTACATGCCCCCGGTTG GCATGCACCATTACCCAATTGCTTTGTCCGGCCTAGGGAGGCACAAAAAGCTGCAGACGAGGCTAAAGCTACGTTTGGGC ACATTGATGGAGATCATCTCACGCTCTTGA
Protein sequence (LotjaGi1g1v0757600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTERKRKVSLFDVVDDAAAKLVKSNGGAANNSLINHWNARPYSQRYFDILEKRKTLPVWHQKEDFLLTLRNNQTLILVG ETGSGKTTQIPQFVLDDVVLESPDKRKKMMVACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTVLKYLT DGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRLH PVEIFYTQEPERDYLEAAIRTVVQIHTCEPPGDILVFLTGEEEIEDACRKISKEVSNLGDQVGAVKAVPLYSTLPPAMQQ KIFEPAPPPLKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ PGKCFRLYTERSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTK LGEIMSEFPLDPLMSKMLVVSPEFNCSNEMLSIAAMLSGCHQQLFSLGYMPPVGMHHYPIALSGLGRHKKLQTRLKLRLG TLMEIISRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 520 | 520 | 0.0 | – | |
| PANTHER | 1 | 520 | 520 | 0.0 | – | |
| Gene3D | 11 | 238 | 228 | 7.6E-89 | – | |
| CDD | 45 | 235 | 191 | 3.52147E-128 | – | |
| SUPERFAMILY | 53 | 518 | 466 | 1.36E-119 | ||
| SMART | 54 | 245 | 192 | 7.2E-32 | ||
| Pfam | 62 | 221 | 160 | 6.2E-8 | ||
| ProSiteProfiles | 67 | 236 | 170 | 21.543 | ||
| Gene3D | 239 | 420 | 182 | 1.0E-72 | – | |
| CDD | 240 | 408 | 169 | 2.43203E-86 | – | |
| ProSiteProfiles | 261 | 441 | 181 | 16.205 | ||
| Pfam | 265 | 399 | 135 | 7.6E-11 | ||
| SMART | 282 | 400 | 119 | 1.9E-16 | ||
| Gene3D | 444 | 528 | 85 | 3.4E-30 | – | |
| SMART | 461 | 530 | 70 | 3.6E-18 | ||
| Pfam | 462 | 518 | 57 | 3.2E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0757600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…