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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0757600 |
| Transcript ID | LotjaGi1g1v0757600.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase, putative; TAIR: AT3G62310.3 RNA helicase family protein; Swiss-Prot: sp|Q9LZQ9|DEAH2_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2; TrEMBL-Plants: tr|I1NBE6|I1NBE6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0757600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133079528..133081859) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGCACCGAGAGAAAGAGGAAGGTGAGCTTGTTCGATGTGGTTGACGACGCTGCCGCTAAGTTAGTCAAATCCAATGG CGGCGCCGCCAACAACAGTCTCATCAATCACTGGAATGCAAGACCTTACTCCCAGAGGTACTTTGATATTCTCGAGAAGA GGAAGACCCTCCCCGTTTGGCACCAGAAAGAAGACTTTTTGCTCACTTTGAGGAACAACCAAACTTTGATCCTTGTTGGT GAGACTGGTAGTGGCAAAACCACCCAGGTTTGTTCCTTTGGGTTCAGCTTCTGTTAATGATTGATGGGTATTTGGTCTTT AAGTTTATTATCAATTGTATATGTATTATTTTCAATCTTATGATTGTGGAGGTCATTACTTATTGAAGAGTTTGGTTTCA GTAAGTGTTGTTTAGTTTTGATGTGTGGTTAGTAAATTGATGGAACTTTAGTTTTGACACAAACCATACATGTCTAAATT TCAAAGTATGTAATGTACCAGAAATAATTTTTGTAGAGATTGGGTTATAGGATTACTTGGAAATTTCAAACATGAATCAG CCATTGTTAATATGAGTCAAGCATGGTTAGAAATGGTACAGTTTTAGTGAGGAAGAGAAACTACTCGGTTCTAGAACAGT TGCTCTGTGTGACTGTGTGTCTGTGTCAGTGTTGTGGGGTGATTGCACATGAATGTTGTAATGGCAAATGCATTCATTAT CTTGGTTCCTTGGTTGTATATCTCTAACTTACTATCATTTGCTTTAAAATAATTTTCTGGGTGACAGATCCCTCAGTTCG TTTTGGATGATGTTGTTTTGGAAAGTCCTGATAAACGTAAGAAGATGATGGTTGCGTGCACTCAGCCTCGGAGAGTGGCT GCAATGTCTGTTTCGCGGCGTGTGGCTGAAGAGATGGATGTAACTATTGGGGAAGAGGTTGGTTACAGTATAAGATTTGA AGACTGTAGTAGTGCGAAGACAGTTTTGAAGTATGTTAAGTTTTACAATTAAATTACTTTCTATTGTTAATGACTAATTC AGTGCTTGATATGCATTTGTTTTCATGCTTCTCTTTTGGCTCTCTTTTATCGGGTCTCAAGTGAAATACTTTGTCTCGCA GGTATCTCACTGATGGTATGCTCTTGAGAGAAGCAATGACAGATCCACTTTTGGAACGATACAAAGTTATTATTCTTGAT GAGGCTCATGAAAGGACTTTGGCTACAGATGTGCTATTTGGTCTTCTCAAAGAAGTGCTTAAAAATAGACCTGACTTGAA GTTGGTTGTCATGAGTGCAACACTTGAAGCTGAAAAGTTTCAGGGCTATTTTTTTGGTGCCCCTCTAATGAAAGTTCCTG GAAGGCTACACCCTGTTGAAATTTTCTATACACAAGAACCCGAGAGGGATTACTTGGAGGCTGCTATTAGGACAGTGGTA CAAATACACACATGTGAACCTCCTGGGGATATACTCGTATTTCTTACTGGAGAAGAAGAGATAGAAGATGCATGCCGCAA AATATCAAAAGAAGTTTCTAATCTGGGAGACCAGGTGGGCGCTGTGAAAGCGGTACCCCTGTATTCCACTCTTCCTCCAG CTATGCAGCAGAAGATTTTTGAGCCAGCTCCACCTCCACTGAAGGAGGGTGGCCCCCCTGGAAGGAAGATTGTGGTATCA ACAAACATAGCAGAAACTTCCTTAACAATTGATGGTATTGTCTATGTTATTGACCCTGGTTTTGCTAAGCAGAAGGTTTA TAACCCACGAGTGCGTGTGGAGTCTCTATTAGTGTCACCAATATCGAAAGCCAGTGCACACCAGAGATCAGGGCGTGCTG GAAGAACACAACCAGGGAAATGTTTTAGACTTTATACTGAGAGAAGTTTCAATAATGATCTTCAGCCACAGACCTATCCT GAGATTTTGAGATCCAATCTTGCCAACACAGTTCTTACTTTGAAGAAACTGGGTATAGATGATTTGGTGCATTTTGATTT CATGGACCCTCCTGCCCCTGAGACCTTAATGCGTGCATTGGAAGTCTTGAATTATTTGGGCGCACTTGATGACGAAGGGA ACTTAACAAAACTGGGTGAAATTATGAGTGAATTTCCCTTGGATCCACTGATGTCAAAGATGCTCGTAGTTAGTCCTGAA TTCAACTGTTCAAACGAGATGCTTTCAATTGCTGCCATGCTTTCAGGTATTATTCTTTTATCTTGTTGCTTTTGTGTCAG TCCAATGTCCTACCACAATATTAGGGGAATGTAGTTTTATGGGCTCCATTTTGAAATGGATTTCCTGCATATTTACATGC GCAAAGGGATAA
CDS sequence (LotjaGi1g1v0757600.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCACCGAGAGAAAGAGGAAGGTGAGCTTGTTCGATGTGGTTGACGACGCTGCCGCTAAGTTAGTCAAATCCAATGG CGGCGCCGCCAACAACAGTCTCATCAATCACTGGAATGCAAGACCTTACTCCCAGAGGTACTTTGATATTCTCGAGAAGA GGAAGACCCTCCCCGTTTGGCACCAGAAAGAAGACTTTTTGCTCACTTTGAGGAACAACCAAACTTTGATCCTTGTTGGT GAGACTGGTAGTGGCAAAACCACCCAGATCCCTCAGTTCGTTTTGGATGATGTTGTTTTGGAAAGTCCTGATAAACGTAA GAAGATGATGGTTGCGTGCACTCAGCCTCGGAGAGTGGCTGCAATGTCTGTTTCGCGGCGTGTGGCTGAAGAGATGGATG TAACTATTGGGGAAGAGGTTGGTTACAGTATAAGATTTGAAGACTGTAGTAGTGCGAAGACAGTTTTGAAGTATCTCACT GATGGTATGCTCTTGAGAGAAGCAATGACAGATCCACTTTTGGAACGATACAAAGTTATTATTCTTGATGAGGCTCATGA AAGGACTTTGGCTACAGATGTGCTATTTGGTCTTCTCAAAGAAGTGCTTAAAAATAGACCTGACTTGAAGTTGGTTGTCA TGAGTGCAACACTTGAAGCTGAAAAGTTTCAGGGCTATTTTTTTGGTGCCCCTCTAATGAAAGTTCCTGGAAGGCTACAC CCTGTTGAAATTTTCTATACACAAGAACCCGAGAGGGATTACTTGGAGGCTGCTATTAGGACAGTGGTACAAATACACAC ATGTGAACCTCCTGGGGATATACTCGTATTTCTTACTGGAGAAGAAGAGATAGAAGATGCATGCCGCAAAATATCAAAAG AAGTTTCTAATCTGGGAGACCAGGTGGGCGCTGTGAAAGCGGTACCCCTGTATTCCACTCTTCCTCCAGCTATGCAGCAG AAGATTTTTGAGCCAGCTCCACCTCCACTGAAGGAGGGTGGCCCCCCTGGAAGGAAGATTGTGGTATCAACAAACATAGC AGAAACTTCCTTAACAATTGATGGTATTGTCTATGTTATTGACCCTGGTTTTGCTAAGCAGAAGGTTTATAACCCACGAG TGCGTGTGGAGTCTCTATTAGTGTCACCAATATCGAAAGCCAGTGCACACCAGAGATCAGGGCGTGCTGGAAGAACACAA CCAGGGAAATGTTTTAGACTTTATACTGAGAGAAGTTTCAATAATGATCTTCAGCCACAGACCTATCCTGAGATTTTGAG ATCCAATCTTGCCAACACAGTTCTTACTTTGAAGAAACTGGGTATAGATGATTTGGTGCATTTTGATTTCATGGACCCTC CTGCCCCTGAGACCTTAATGCGTGCATTGGAAGTCTTGAATTATTTGGGCGCACTTGATGACGAAGGGAACTTAACAAAA CTGGGTGAAATTATGAGTGAATTTCCCTTGGATCCACTGATGTCAAAGATGCTCGTAGTTAGTCCTGAATTCAACTGTTC AAACGAGATGCTTTCAATTGCTGCCATGCTTTCAGGGGAATGTAGTTTTATGGGCTCCATTTTGAAATGGATTTCCTGCA TATTTACATGCGCAAAGGGATAA
Protein sequence (LotjaGi1g1v0757600.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTERKRKVSLFDVVDDAAAKLVKSNGGAANNSLINHWNARPYSQRYFDILEKRKTLPVWHQKEDFLLTLRNNQTLILVG ETGSGKTTQIPQFVLDDVVLESPDKRKKMMVACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTVLKYLT DGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRLH PVEIFYTQEPERDYLEAAIRTVVQIHTCEPPGDILVFLTGEEEIEDACRKISKEVSNLGDQVGAVKAVPLYSTLPPAMQQ KIFEPAPPPLKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ PGKCFRLYTERSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTK LGEIMSEFPLDPLMSKMLVVSPEFNCSNEMLSIAAMLSGECSFMGSILKWISCIFTCAKG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 524 | 524 | 0.0 | – | |
| PANTHER | 1 | 524 | 524 | 0.0 | – | |
| Gene3D | 10 | 238 | 229 | 6.6E-89 | – | |
| CDD | 45 | 235 | 191 | 2.74087E-129 | – | |
| SUPERFAMILY | 53 | 525 | 473 | 7.89E-120 | ||
| SMART | 54 | 245 | 192 | 7.2E-32 | ||
| Pfam | 62 | 221 | 160 | 5.6E-8 | ||
| ProSiteProfiles | 67 | 236 | 170 | 21.543 | ||
| Gene3D | 239 | 420 | 182 | 9.1E-73 | – | |
| CDD | 240 | 408 | 169 | 4.97614E-87 | – | |
| ProSiteProfiles | 261 | 441 | 181 | 16.205 | ||
| Pfam | 265 | 399 | 135 | 6.9E-11 | ||
| SMART | 282 | 400 | 119 | 1.9E-16 | ||
| Gene3D | 444 | 529 | 86 | 1.9E-30 | – | |
| SMART | 461 | 531 | 71 | 6.9E-18 | ||
| Pfam | 462 | 524 | 63 | 1.5E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0757600.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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