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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0758900 |
| Transcript ID | LotjaGi1g1v0758900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase DeaD; TAIR: AT2G47330.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24; TrEMBL-Plants: tr|G7KTM4|G7KTM4_MEDTR DEAD-box ATP-dependent RNA helicase-like protein; Found in the gene: LotjaGi1g1v0758900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133225458..133230046) extracted from Lotus japonicus Gifu genome v1.2.
CCCAACTCCAGGTCTTAGACCCGTAGTCATCACCACCTCCTTTTCCTTCTTCAACCAGAAAATTCAACCACTGTAGAGCG CAAAATCCCTTACCTGCAACGTTCCAGACGCGGAGGCGCCAATTCCAGTAGCCATAACTCAATCCACCCCTCTCCGGTAA AGCTGAAAGCCCTAATCCCATAATTTCACTTTCCCCGTTCAAGCTCAGTTAGGGTTTTCTCCTCCACCGCAGAAAAATGT CGAAGAGGAAGTTCGGGTTCGAAGGTTTCGGCATAAACCGCCAATCAACCTACAGTTTCGAGCGATCTCAACCTCCTCAG CGCCTCTACGTTCCTCCCTCTTCACGCCAAGGCCACGACAACTACGAGGACACTGATCTCGACCACATCGATTACGACGA CAACAACAACGATGACGCCAGGGACGAAGGGAACAACAACGAAAACGAAAACGACGCCACAGCTACCACGGGAGGGGGCG AGGAGGAGGAAATCGATCCATTGGATGCATTCATGGAGGGGATTCATGAGGAGATGAAGGCGGCGCCGCCTCCGAAGCCG AAGGAGAAGGCGGAGGATAGGTATAAGGATGATGAGGATGATGATCCCATGGAGAGCTTTCTGAAGGCGAAGAAGGACTT GGGGTTGACGCTGGCGTCGGATGCGCTGCATGCTGGGTATGATTCTGATGAGGAGGTTTATGCTGCTGCAAAGGCTGTGG ATGCTGGTATGGTAGAGTATGATTCTGATGATAACCCTATTGTTATTGATAAGAAGAAAATTGAGCCCATTCCTCCTCTG GATCACTCTTCCGTTGATTATGAGCCTTTTAGTAAGGATTTTTATGAAGAACCTCCTTCAATATCAGGTAACTTCACTGC ATAACACAGCCCTGAAATTCTATTGTTATGCTTTACTTGTTGATTCATGCTTATGATTTGTTGGTAATATCGGTCTCTGT TGTGACGTTTTAATGATTTAGCTACCTTTTTCTCCCTTTCCATGGAAGATAATGTCTTGAATTGTGTGTTAACTCGGATT GCAAATCGGGGGATGAGTAACTCACATGGTTGAACTAAGGGTAATTGTAGGTGAAGGGTCAGGGTTCAAACCCTGAGGAG GGACAATTTTTACTAATTAACTAACAACTAACATTTGCATATAAAAAAACTCGGATTGCAAATCTGACACCTTTGTTCGT TTTTCCATTTGCTACAGGTATGAGTGAACAAGATGTAACGGATTACAGAAAGAGTTTGGCTATTCGTGTATCTGGTTTTG ATGTTCCTAAGCCCGTAAAAACATTTGAGGACTGTGGGTTCCCTCCCCCAGTTATGAGTGCTATAAAAAAGCAAGGTTAT GAGAAGCCCACGTCTATACAATGCCAAGCTTTACCGGTTGTGCTTTCTGGCAGAGATATCATTGGTATAGCAAAAACTGG TTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAGGAGGGTC CTATAGGAGTGATATGCGCACCTACCAGAGAATTGGCGCAACAGATATATCTTGAGTCCAAGAAATTTGCAAAATCATAT GGTATACGCGTCTCTGCTGTCTATGGTGGAATGTCAAAACTTGAGCAGTTCAAAGAACTCAAGGCAGGCTGTGAGATAGT TGTTGCTACCCCTGGCAGATTGATAGACATGCTAAAAATGAAGGCATTGACAATGACAAGAGCAACTTATCTGGTGCTTG ATGAGGCTGATAGGATGTTCGATCTTGGATTTGAGCCACAAGTAAGGTCCATTGTTGGTCAGATTAGGCCAGACCGTCAA ACTTCACTCTTTTCTGCAACAATGCCTCGTAAAGTTGAAAAGTTGGCCAGGGAAATCCTTTCTGACCCTGTTAGAGTAAT AGTTGGGGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTCAAGTGGTGCCTTCAGATTCTGAGAAATTGCCGT GGCTCCTAGAGAAGCTGCCTGAAACGATTGATCAAGGTGATACCTTAGTATTTGCTTCCAAGAAGGCCACTGTGGATGAT ATTGAGACACAATTGTCTCAGAGGGGCTTTAAGGTTGCTGCCCTACATGGTGATAAGGATCAAGCTTCTCGTATGGATAT TTTACAGAAGTTTAAATCTGGCGTCTACCATGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTTGACATCAAATCAA TTAAAACAGTGGTAAACTTTGATATTGCAAAAGACATGGACATGCATGTCCATCGGATTGGAAGAACGGGCCGTGCTGGT GACAAGGAAGGAGTTGCATACACACTTATAACTCAGAAAGAAGCACGGTTCGCTGGTGAATTGGTTAATAGCTTAATTGC TGCTGGTCAGAATGTTTCCACGGAGTTGATGGATCTTGCTATGAAGGTAACCATTCCTGATATTATATTATTGTTTCATC AATATCTGATTATCTTAGTAACTGGTTTCATGCTTGTAGGCTCTAGTCCACATAATTATTGTTGGTGCATGCTATTGTTG ATTCTGTAGATATTCTTGACACCATGTGCTTGGATGAATCAATTTCAATGAATTTAAAATATTAAGAAGTTAAGTGTTTG TATTTTAATTGTTGTCATATACAGAGTATTTTGTTTGCATGACTATTTAAGAAATTGGATGAAAAAATTTTGTTAGTCAG AGAGATGAGAGAGCAGAGTTTGAGGGGAGGTATTTTTTGAATTCCTTTTAAAATGGTGGAAATTCAAATCTTTTATTTCG GATTCGGAAATTACGCAATAAAACCACCTGGTATTTTTAAAATTCTCTTATTCCAAATAAGATATTTTAGATTTAAGTAA TTTGAAATCATCTCAACGAGTACATTAACTTATTAAAGATTTAAAGTTAGTTATTGGTTATTCAAACACACACCAAGTTG TCCGAGTTGTAGAAATGGAATTAGTGTTGGGGCAATAAAAGAAAAGCTTATCATGAATGTGCTTTTCTCGTTTAATAATA TATTTATTTGCCTTATATGGTTGTTATTTGTTACTAAACTCTTTTTTTTACATGTTTTAAGATGATGCTTAAATGTTCAA ATATCGTGTGTTTGAAATGATTTAATGACTTTTGTCTTGTAATTGGATAGGATGGGAGATTCAGGTCGAAACGCGATTCA AGAAAAGGAGGTATGAGATGCGACTTCAATTATATGCATATAGCCCTATAGGATTCAAAATTTGCTTAGCAAAAATTGAG AAAAAAGAATATCTAATATTTGCTGTAACACCAGTTTGTGCTCTTGCTATAAGCTGTATTGCTATCCATCTGCAGTAGAT CCTTGATATTCATACTTGATAGGAGAATCTCTCTCTGACCTTTTTATGCATTGTGCAGGTGGGAAAAAAGGCAAAGGCAG AGGTGGTGGTGGGAGTGGCAGAGGCGTGCGTGGAGTGGATTTTGGTTTGGGCATTGGATATAATTCAGAGTCAAGTAGCA CACCACCTAACACTGCTCCAAGTCGTTCTGCTGCTGTAAATTCTTTGAGGACAGGAATGATGTCGCAATTTAAAAGTAGC TTTGTTGCTGCATCCTCAAACTCTCAAAATCAAGGTTTCAGTAACAATAAAAACATGGCTGCTAACAAGAGGCCAACACT CGCTGGCTTTGTATCTGGTGGATCAATCGGTGGTGATATAAATAGACGTCAGTTTGTTGCTTCAACCAGTCCTGCTCAAT CAGCTGTAAATTCCACTAGTCAGAGTTCTGGAGTAAATCCTAGTCAGACAAGCACGAACAGGTTAGTTTTGTAAGCTGAA CTTGCCTCATTCTATCTTTATAGGTTAATATTTTGGTTGCTGATGAAGTTCTTGTTTTTCTTTTGCTGCAGTTCTAAACC TAGAGAAAGGCGAAGGCCATCGGGTTGGGATAGATAGTTTAGATAGTTTTTCTCATTGAATGACACCACTGTCAAATGCA TCAATGTTCCTATTTATTTATATAGGTCAAGCCTTGATTTGATTTTGTTTGTATTATTAATGCTTTAATTTCCAACCACC AATTATTTTGGCTTGAGGTTTGTTTAGTTCTATTTTCGTTTTTAAAATCCATGGTATTGAGGTTTGCTGTTTTTTTTTAG TTATCTAATTCGAAAACCGAAAGCGCTGATGTAGATTGTAATGGTGAAGAATTTGTGACGGGTGTTGGTAAACATATGAT AAAAATTTAATTTCTATCAGTATATCAGTTATTTAAAGTTATTTTAAAGGATGATTTTCATGTGAATAAGTTGCTCGTCT AAAATAGGTGAGCAACATGTGTGGATAGACGTTTGAAACCGTAAACACTATCTGATTTTTGTGTCATATTTGACAACTTA ATAGCAAATCTAACTATCAAAAGTTAAAGCTATAATTTGTGAGATTTAAATTTGTTAATTTTGTTGGTGAACAATATGAG TACTTGTTGAAGAATTCAGTCAAAATTGCTCTATATCGTTTCACAATGCAATAATATGCGGCATTATATAAACACTAATT AGTTGTAGTGTTACACTAACGAATGAATG
CDS sequence (LotjaGi1g1v0758900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGAAGAGGAAGTTCGGGTTCGAAGGTTTCGGCATAAACCGCCAATCAACCTACAGTTTCGAGCGATCTCAACCTCC TCAGCGCCTCTACGTTCCTCCCTCTTCACGCCAAGGCCACGACAACTACGAGGACACTGATCTCGACCACATCGATTACG ACGACAACAACAACGATGACGCCAGGGACGAAGGGAACAACAACGAAAACGAAAACGACGCCACAGCTACCACGGGAGGG GGCGAGGAGGAGGAAATCGATCCATTGGATGCATTCATGGAGGGGATTCATGAGGAGATGAAGGCGGCGCCGCCTCCGAA GCCGAAGGAGAAGGCGGAGGATAGGTATAAGGATGATGAGGATGATGATCCCATGGAGAGCTTTCTGAAGGCGAAGAAGG ACTTGGGGTTGACGCTGGCGTCGGATGCGCTGCATGCTGGGTATGATTCTGATGAGGAGGTTTATGCTGCTGCAAAGGCT GTGGATGCTGGTATGGTAGAGTATGATTCTGATGATAACCCTATTGTTATTGATAAGAAGAAAATTGAGCCCATTCCTCC TCTGGATCACTCTTCCGTTGATTATGAGCCTTTTAGTAAGGATTTTTATGAAGAACCTCCTTCAATATCAGGTATGAGTG AACAAGATGTAACGGATTACAGAAAGAGTTTGGCTATTCGTGTATCTGGTTTTGATGTTCCTAAGCCCGTAAAAACATTT GAGGACTGTGGGTTCCCTCCCCCAGTTATGAGTGCTATAAAAAAGCAAGGTTATGAGAAGCCCACGTCTATACAATGCCA AGCTTTACCGGTTGTGCTTTCTGGCAGAGATATCATTGGTATAGCAAAAACTGGTTCTGGTAAAACTGCTGCTTTTGTGC TTCCTATGATTGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAGGAGGGTCCTATAGGAGTGATATGCGCACCTACC AGAGAATTGGCGCAACAGATATATCTTGAGTCCAAGAAATTTGCAAAATCATATGGTATACGCGTCTCTGCTGTCTATGG TGGAATGTCAAAACTTGAGCAGTTCAAAGAACTCAAGGCAGGCTGTGAGATAGTTGTTGCTACCCCTGGCAGATTGATAG ACATGCTAAAAATGAAGGCATTGACAATGACAAGAGCAACTTATCTGGTGCTTGATGAGGCTGATAGGATGTTCGATCTT GGATTTGAGCCACAAGTAAGGTCCATTGTTGGTCAGATTAGGCCAGACCGTCAAACTTCACTCTTTTCTGCAACAATGCC TCGTAAAGTTGAAAAGTTGGCCAGGGAAATCCTTTCTGACCCTGTTAGAGTAATAGTTGGGGAGGTGGGGATGGCAAATG AAGATATTACTCAAGTTGTTCAAGTGGTGCCTTCAGATTCTGAGAAATTGCCGTGGCTCCTAGAGAAGCTGCCTGAAACG ATTGATCAAGGTGATACCTTAGTATTTGCTTCCAAGAAGGCCACTGTGGATGATATTGAGACACAATTGTCTCAGAGGGG CTTTAAGGTTGCTGCCCTACATGGTGATAAGGATCAAGCTTCTCGTATGGATATTTTACAGAAGTTTAAATCTGGCGTCT ACCATGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTTGACATCAAATCAATTAAAACAGTGGTAAACTTTGATATT GCAAAAGACATGGACATGCATGTCCATCGGATTGGAAGAACGGGCCGTGCTGGTGACAAGGAAGGAGTTGCATACACACT TATAACTCAGAAAGAAGCACGGTTCGCTGGTGAATTGGTTAATAGCTTAATTGCTGCTGGTCAGAATGTTTCCACGGAGT TGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCGAAACGCGATTCAAGAAAAGGAGGTGGGAAAAAAGGCAAAGGC AGAGGTGGTGGTGGGAGTGGCAGAGGCGTGCGTGGAGTGGATTTTGGTTTGGGCATTGGATATAATTCAGAGTCAAGTAG CACACCACCTAACACTGCTCCAAGTCGTTCTGCTGCTGTAAATTCTTTGAGGACAGGAATGATGTCGCAATTTAAAAGTA GCTTTGTTGCTGCATCCTCAAACTCTCAAAATCAAGGTTTCAGTAACAATAAAAACATGGCTGCTAACAAGAGGCCAACA CTCGCTGGCTTTGTATCTGGTGGATCAATCGGTGGTGATATAAATAGACGTCAGTTTGTTGCTTCAACCAGTCCTGCTCA ATCAGCTGTAAATTCCACTAGTCAGAGTTCTGGAGTAAATCCTAGTCAGACAAGCACGAACAGTTCTAAACCTAGAGAAA GGCGAAGGCCATCGGGTTGGGATAGATAG
Protein sequence (LotjaGi1g1v0758900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKRKFGFEGFGINRQSTYSFERSQPPQRLYVPPSSRQGHDNYEDTDLDHIDYDDNNNDDARDEGNNNENENDATATTGG GEEEEIDPLDAFMEGIHEEMKAAPPPKPKEKAEDRYKDDEDDDPMESFLKAKKDLGLTLASDALHAGYDSDEEVYAAAKA VDAGMVEYDSDDNPIVIDKKKIEPIPPLDHSSVDYEPFSKDFYEEPPSISGMSEQDVTDYRKSLAIRVSGFDVPKPVKTF EDCGFPPPVMSAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT RELAQQIYLESKKFAKSYGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMTRATYLVLDEADRMFDL GFEPQVRSIVGQIRPDRQTSLFSATMPRKVEKLAREILSDPVRVIVGEVGMANEDITQVVQVVPSDSEKLPWLLEKLPET IDQGDTLVFASKKATVDDIETQLSQRGFKVAALHGDKDQASRMDILQKFKSGVYHVLIATDVAARGLDIKSIKTVVNFDI AKDMDMHVHRIGRTGRAGDKEGVAYTLITQKEARFAGELVNSLIAAGQNVSTELMDLAMKDGRFRSKRDSRKGGGKKGKG RGGGGSGRGVRGVDFGLGIGYNSESSSTPPNTAPSRSAAVNSLRTGMMSQFKSSFVAASSNSQNQGFSNNKNMAANKRPT LAGFVSGGSIGGDINRRQFVASTSPAQSAVNSTSQSSGVNPSQTSTNSSKPRERRRPSGWDR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 123 | 123 | - | – | |
| MobiDBLite | 13 | 32 | 20 | - | – | |
| MobiDBLite | 55 | 69 | 15 | - | – | |
| MobiDBLite | 90 | 123 | 34 | - | – | |
| PANTHER | 116 | 710 | 595 | 1.0E-157 | – | |
| PANTHER | 116 | 710 | 595 | 1.0E-157 | – | |
| Gene3D | 203 | 446 | 244 | 3.0E-87 | – | |
| SUPERFAMILY | 221 | 447 | 227 | 1.74E-74 | ||
| ProSiteProfiles | 238 | 266 | 29 | 12.368 | ||
| CDD | 249 | 444 | 196 | 9.78261E-130 | – | |
| SMART | 257 | 459 | 203 | 5.7E-64 | ||
| Pfam | 262 | 433 | 172 | 3.2E-50 | ||
| ProSiteProfiles | 269 | 444 | 176 | 31.666 | ||
| SUPERFAMILY | 385 | 618 | 234 | 4.31E-51 | ||
| ProSitePatterns | 390 | 398 | 9 | - | ||
| Gene3D | 447 | 622 | 176 | 2.4E-49 | – | |
| CDD | 456 | 588 | 133 | 7.79106E-52 | – | |
| ProSiteProfiles | 469 | 618 | 150 | 22.609 | ||
| Pfam | 471 | 578 | 108 | 5.9E-28 | ||
| SMART | 497 | 578 | 82 | 4.0E-32 | ||
| MobiDBLite | 621 | 650 | 30 | - | – | |
| MobiDBLite | 728 | 782 | 55 | - | – | |
| MobiDBLite | 736 | 768 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0758900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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