Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0760400 |
| Transcript ID | LotjaGi1g1v0760400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT1G02610.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4JKK0|SUD1_ARATH Probable E3 ubiquitin ligase SUD1; TrEMBL-Plants: tr|G7KST0|G7KST0_MEDTR RING/FYVE/PHD zinc finger protein; Found in the gene: LotjaGi1g1v0760400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133352437..133355910) extracted from Lotus japonicus Gifu genome v1.2.
CCCAACCAAAGATAAATAAGAAAAGGTGCAAACGATGTTTCATCTAATTGTTTTCATCTGTTATTTTCTTTCTTTCCAAG CTTCCATTTTAATTCATATAATCATATCTCCATATAAATCATGTGCATATTATTTACTCTAATTATCACTCCTTTATATG CTTTCCTTACAAAGGACTTGAAAAAGATGCATTTCCTTCCCAATTCTCTCCTTCTCATTTCTGTCGCAGTTTATGACATT TTGTTTTATTATTATATATACATAATTAAGCAAGGAATCTGAGTAAGATTAACAATAATAACTACTTCAAGCATAAAGGG AAGTTTAAACAAAGTTGTTATCTGTTCCTGCATTGCAAGCAAGTCTCATATGCCCAATTTATGAGGTCAAAGCTTAGCTA GCCTACACTGCTACACATGATTAGATTCTTATAAAATTAGTTCACATTAATTTAATATTTATTTTGAAAAATCATACATA CAGGGGCAGTTTTGGAATTTTGTAGCACTTTCCCTCTTTGGTATACATAGTCCTGATTCTGAGAAAGACAGAGAAAGAGA GAGCAGAGAAAAACAGAGTACAGGACAGAATTTGAAAACAAAAGTTGCAATTTTAAGAAGAAAAAAGGGATCATTCATTG GGTGTGAGGAAAAACATGGCAGAGGTTGTCTTGTTGGTTGATGATTTGAAGTTTCTTTCTGGGATTTCTTGGTGTCGAAT ATGCCATGAAGAAGAATTTGAGAGCTCCAAAAGCTTGGAAGCACCCTGTTCTTGTTCTGGAACCGTTAAGGTAAATACAA AACACACAATAATTTCTTATTATTGGTTTGTTTCTCATCTATTTTGCTTTTGGAAAATTTCTTAATTGTTATGAATAAGT GTGTTTTGTTTTTTGTTTTGCAGTTTGCTCATAGAGATTGCATACAGAGATGGTGCAACGAGAAAGGAAACACAACATGT GAAATATGTCTCCAGGTATGAATGAGTTTCAATCAAATTTGAATTATCTTATACTAATCAAATTTTTGTACTTCTTCAAA AAGAAAAATTGAGAAAGGAAGAAAGAGTTATCTGTGTGTACAAGTATTTAATTTGCTGTCCTTATTACTCAAACTTTATG GGCTTCTATAATTGATTTTGATTTTGATTGATAGAAAGTAGAAACGATTATAAATTTCCTTTCTTCCTTTGCCCTTTTTA TTTGTGATCGCGGTTTCTTTTGTATCTGTCTTTTGCTCAACTTAGCTCAATATTTAATTCTCTTCTATTTAGTTTCTATT TCTATGTGTTTATTTGCTTCTCGCAAACACAAGCTTAGTTTGGTTCCTTATCTTATCCCTTTTCCCTTTTCTCAACTTAC CTTTTCCCTTTTCTTATCTTCATTTCCATTTGGTATTGTTAGGAAAATGGAAAAAAAAAATATTATGCATTCAATGAACC GAACTCTTTCAACATCACATTACATAACTATGTCTTAAAAAACTTATTTAAACTTATTTTATAACATAAACATTTATATT TTGTTCAAGTATAATATTTGATGAGCATTGATTATTTCTATTGTTGCAGCAATACAAACCTGGATATACAGCTCCTCCTC CAAAGAAGTCTTTGATAAATGATGAATCAATTTCCATTAGGTACTTTCCCGCGTGCAATTCAATCAAAGTGAACTTGCAA CTAATTCTTTTTTAATCAACCATTTCACAAAGTTAAGTCTTGACTTACCTATAATATTTCAGGGTGTAACTAGTTAATTA GGCAATTATATATATATGTGTGCAATGCGCGTGTATGTGAAAATGACCTGTCTCTTTTATCTTTTATTTCTTTCTAATTA AAAAATTAACATCTCTAGATTTTCCCCTTTTTATAAATGGCACTTTTCTTTTTATTATAGAAAAGGACAAAATCTAATAC ATATAATAAAAGAAACAAGCTATTTTTTATTTTATTTTACATGTGTGGGGATGAAAAACTGACAATATTAATTAAATTTG GAAGTGGGGAGGAAGAAGCAAGAACAGAGGATATGGTGGAAGGAGTTGCAATAGAAAGTGATTACTCAGAATGCAGCTCT GCCGCTGAAAGAAACGTGTCTTGCTGTCGATCACTAGCATTAGCTGTAAGCACTATCTATATATATTTGCTTTTCTTTTC TTCTCCTTGTTTCTTAATTAATCAAATTCATATTATTTTACATCTGTATGATTATTTGTTGTTCTTGATGCAAACTAGTT TAATTCAATTTACATGTAAACTCTAAACTAATCAAATGTCATTTTCCCTTCTGCAGTTTTCAGCTGTCTTACTTATAAGA CATCTTTTTGGAGTGTTTACAAATGGAACAGAAGATTACCCATTTACACTTCCCACAGTAAGTACATGTTTTCCAATTTT TCAATGAAAAAAGAGAGAAAAAAAATCCACAATGAATCTTTGCCTACATACAACTGAACTCATGGTACTTTATGTACTGA TTTTGATGTAGGTCATTGTATTGAAGGCTAGCGGAATTATTATACCCATGTACATAGTTATTAGGACGATCGGAGCTATT CAGAACAAAATTCAGCGACGGTGCCAGGATTCTGACTACGACGTAGCTATGTCTTATGAAGATGATGAAAATGAAGGATC ACATGATGTAAATTTAATACATTCATAGGAAATTTAATACATTCAGTTAGTTAAAACTAAATGAGAAATTGTGTACATGA TGCATATAAGATTTTGAGCTTCAATTCAATAAATTACGAATCATTTTTACCATCTTAACATGGTATCAGATGAAAATAAC TTATGTTTTTCTTCTTTTCACTTAATATTTTCCAATCATTTTCTTCAATGGTGCCCCCATGTCTGATACTAGTGGGCTAG TGGCGGAGCCATGTCTATAGTTATTAGGATGATTGGAGCCATTCAGATCATAATTCAGCGACAGTGCCAGGATTCCAACT ACGACATAGCTATGCCTTGTGAAGATGATGGAAATGAATTGCATGATGCAAATTTAATACATTCATAGGAAATTTAATTC ATCCAGTTAGTTAGTTAAATGAGAAGTTGTGTACATACTTTGATGCATATAAGATTTTGAGCTTCAATTCATTAAACTGA GAATCATTTTTACCATCTTAACATGGTATCAGATGAAAATAACTTCCCCTTTTCTTCTTCTTTTCTCTGATTATTTGACA ATCCTTTTCTTCAATGGTGGTGTTGGAAAATGACCCTCCCAACCAAGGTGGTTAACAATGGTGGCCATCGTCCAAATAGA AATAGTATTCCGTTGTCCAGCCACAAAAGTCAAGTATTCGCATCTTCATTTCAAGGAAGGAAACCGGCTGATTTTGTTCC TTAATTCCCGTGTAAATTTATGAGGTGAAGGAGGGTGAATGTGTGCAAGTTGAGTCAGCCGGAGCGTTCCAGCGAGAGAG CACCAGAGGGTGCCTCTGGGCACCAGAGTGTGGT
CDS sequence (LotjaGi1g1v0760400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAGGTTGTCTTGTTGGTTGATGATTTGAAGTTTCTTTCTGGGATTTCTTGGTGTCGAATATGCCATGAAGAAGA ATTTGAGAGCTCCAAAAGCTTGGAAGCACCCTGTTCTTGTTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATACAGA GATGGTGCAACGAGAAAGGAAACACAACATGTGAAATATGTCTCCAGCAATACAAACCTGGATATACAGCTCCTCCTCCA AAGAAGTCTTTGATAAATGATGAATCAATTTCCATTAGTGGGGAGGAAGAAGCAAGAACAGAGGATATGGTGGAAGGAGT TGCAATAGAAAGTGATTACTCAGAATGCAGCTCTGCCGCTGAAAGAAACGTGTCTTGCTGTCGATCACTAGCATTAGCTT TTTCAGCTGTCTTACTTATAAGACATCTTTTTGGAGTGTTTACAAATGGAACAGAAGATTACCCATTTACACTTCCCACA GTCATTGTATTGAAGGCTAGCGGAATTATTATACCCATGTACATAGTTATTAGGACGATCGGAGCTATTCAGAACAAAAT TCAGCGACGGTGCCAGGATTCTGACTACGACGTAGCTATGTCTTATGAAGATGATGAAAATGAAGGATCACATGATGTAA ATTTAATACATTCATAG
Protein sequence (LotjaGi1g1v0760400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEVVLLVDDLKFLSGISWCRICHEEEFESSKSLEAPCSCSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYKPGYTAPPP KKSLINDESISISGEEEARTEDMVEGVAIESDYSECSSAAERNVSCCRSLALAFSAVLLIRHLFGVFTNGTEDYPFTLPT VIVLKASGIIIPMYIVIRTIGAIQNKIQRRCQDSDYDVAMSYEDDENEGSHDVNLIHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 129 | 129 | - | – | |
| PANTHER | 2 | 214 | 213 | 6.2E-95 | ||
| PANTHER | 2 | 214 | 213 | 6.2E-95 | – | |
| ProSiteProfiles | 12 | 74 | 63 | 21.619 | ||
| Gene3D | 14 | 77 | 64 | 8.4E-19 | ||
| SUPERFAMILY | 18 | 72 | 55 | 4.71E-15 | – | |
| SMART | 19 | 68 | 50 | 2.7E-19 | ||
| CDD | 20 | 67 | 48 | 2.27166E-18 | – | |
| Pfam | 20 | 67 | 48 | 1.6E-14 | ||
| Pfam | 73 | 180 | 108 | 2.3E-29 | ||
| TMHMM | 129 | 148 | 20 | - | – | |
| Phobius | 130 | 150 | 21 | - | – | |
| Phobius | 151 | 155 | 5 | - | – | |
| Phobius | 156 | 177 | 22 | - | – | |
| TMHMM | 158 | 180 | 23 | - | – | |
| Phobius | 178 | 218 | 41 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0760400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…