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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0770100 |
| Transcript ID | LotjaGi1g1v0770100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT3G05545.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8CIK8|RFWD3_MOUSE E3 ubiquitin-protein ligase RFWD3; TrEMBL-Plants: tr|A0A151U4Z3|A0A151U4Z3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0770100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134251392..134257566) extracted from Lotus japonicus Gifu genome v1.2.
CGGTTTCAACTAAAATTAAACGGGATAGAGAAAGTGGAAATTGATCTAAAACCATCTTGGACCTCTCTTCTCTCTCTTTT TATCTATCTATCTATCTATCTATCTATCTAATCTATATGCTGAAAACCATAAGAATAAGAATTGAAAATGAAAAGAAAAG AAACTGCTTAGAATTCTGATACATACATACACAGATCTAACTAATACCCACCAAACACGCTTCCTTCCACCTTCTACCTT CTCCGTCGCATTTTCTTCTCTCCGGCGTCCCTAATCCAATCACAGTAGCACTTTTACTCCCTCCACCGCCGCACACAACT ACCGCAAATCACACCCAGCCTGGTGGTTCTAGAGTTACTCATGTGATGCCATTCTAGGTTTTTTCAATTCCGATGGGTCT TGGAAAACTCGATGATGATGACGGTGGAGGAGGTGGTTCACCTAACTCCTCCGTCCCTTGTTCAATTTGCCTCGAGGTTG TTGCAGACACCGGCGATCGATCCTTCGCCAAGCTTCTATGTGGCCATCAATTTCATCTCGGTAACTCCTCACTCCTTCAT CTTAATTTCGATCCAATTGTTGTAACTGTTTATCAATTGATTTCGACTTTCACCGTTTGAGATCTGAATTTTCATATTCT TCACTGGTTTACGAGATAGAAACTGAGAAATTTGAGTTTTATTATCATTTTGTAACAAGTATTACGAGCACTGAGGTGGA TCTTTGCTCTTATTGTCCTCAATTGGCTCAATCCTGTGCTCCTGCCATCGAATTACAGCAGAGATAGGGGTTTTAAGAAT TTCTGTTTGCAATGGATTTCTTCTGTCCTGTGCTACAGATAACAATAGTAGTCAATTGAATTTTATGATTCTGATTGTTA AACGCTTAAACTGACAGTAGCTGATTCTGTTGGAAGACTCATCTAGTACTAGTACTTTAATTTACAACACTTGTTTCATT AGTGCATATTCTTGTTTTAAGCAACATTTCTAGGTTATATGTTTTTGGAAATGATTTCTTAAACAAGCTGATTGCTGCAT CCACGCGGCATGACATCGTATTGTTATGCTTCTCATGTCCTTCTTTATGTTGTTGTTGTTCAGATTGCATTGGATCAGCC TTCAATATGAAAGGGGCAATGCAATGCCCAAATTGTCGCAAGGTTGAGAAAGGTCAGTGGCTTTATGCTAATGGTTCCCG TTCTTATCCAGAATTTAGCATGGAAGACTGGACACATGATGAGGATCTATATGATCTTGGCTACTCTGAAATGGTAAAAG GAACTGCATGCATCCCATTAATTATATTGGTGCCGTTTTTTTGTGTTACACAATAAAAATGTGCTTGCAATGTCTTATTG ACAAACGATTTTATGTAAATACTAAATACTGACTGTTTATTTTGTTTGTTGATCACCTTTTGTTATTTATCCATTTCCTT CAAGCCGCTTAAATTGGTTATCTTCTCATTTGCATTTGTAAAATTATTGCTTCCTGACATACCCATTAATCTCATAAGAT CTTATAGATCAAATATTTGTTTAGAGAAGAAACAACAGATTGGAAAGAAAGAAGAGAGGGAGAGTTTGGCAGGATATTGA TTTCTCCTAAGTAGAGAAGAGTAAGAAAACAGAGAGCCGAAGTATATTAAACATGAACTGGGCTGCCCAATCTTACCAAT AATGAAAAAATAAACTAGAAGCACAACCTTGAGAAGGAACCTAAAGAGTTGTCCCTTTTTTATTTTCCTTTTTCATTCCT ATACCTCTGCCAATCTTTGAATCTTCGAAATGTACTACTAATCCCGACGGGCGCAGTCTTTTTTTCTCCCTTGTTACAGC CCTTAAATGTAGCCAAAATCTTTATTTTATTGTAAGTAGTTAGAACTTGGAATTTCAAGTTTGGCATTACTGGCTTTAGT TGGAATTATTTCTTCTTTTTTCATTATTGTGTGGGTATATATATATTCTGCTTACCGTTTTGACTAAACTTTGATTTCTA AATGCTTTGTGCAGTCCTTTGGAGTTCACTGGTGCCCTTTTGGTAACTTGGCCCGTCTTCCTTCATCTTTCGAGTAAGCT TCTAGTTAACATAACAGAATATGCATGCAGACTAATCTCAGTTCAAATTTTGTTAACTTTGATGTGTCTGGGCCTTGAGA AAAGCATGCTTAGGGATTTTTTGTTAAAGCCAGTTCTAAGATATAATCGGTACTTGAAGTCAGTATTAAGGGTTTTGTTA TGTCTACTTGAATGTAATCTTCTTGTCACATATTTTTACATCATATACTTGTCATATGTTGAAGATAATTATATTTGTGA AAGTTACAACTTACAAACCGGAATTCTGGATGAAAATGTTGTGTGTCTATGAACAATTAACCACATCACAACAATATCTT GGATGTTTGTTTCAGTGCCCACATTTTTAGATCTTGACGGAAAAATCTAAGGTGTTTATGCAGAATGAGCTTTAATGTTG TTTTGGGCATATTTGTTGACTATGACTTCATTTGAAATTTTTGTTTGTGAAAAGTTTTTCATGTTTGTTTAATCAAGTCA TTAACATATTGAAGGGAGTCAGGTTGAACTGAAGGTTTTGTTCTTGAAAAGGCCTTAGTTGCTGGTAAGTGGTTTGTGTT AGGAGGGGGATTGTTGACCGTAGGCTAATATTTTGCTTTGGCAAGGTTAGGCGGGTCATAGTTAGATTCAATCCAGGCTT GATTCTTGTTAAGACACACAAACTCCTGGACACTAGTGATGTGAGGGGATTGATGGTCTGGGCCAGCATACTGCCTTGGC AAGGTCCAGTTAGAGTTGGAGTCATATTGTAATATGGTGATTGGTTTTGGACATAGGTAGTAAAAGTTAACCTGTGACTA ACAAGTGAAGCTTTTGGCTTATGGTAAGACTTGGTGCAGCAAGTAATATTAGAGCCAAGGCCACATGTTTGTTTCTTCGA AAAGGCTTTGTTAGGCCAATATCCTGCCTGAACAATGAACTTTCGAGGCAGGTGCTAGGAGAAAGAATGTTGGTCACTTG GCTGTGACGTAAGGCCAGAGGCCCATAGTTAGATTGAACCATGACACTTGCAGATGGAATTAAGTAGATAAGTATGCGTC AAATAACAACTATTATAGCTTATGGCCTAGTTGCAAGTGCTCAATCTGACAATATCTTTTCTTTTTGATGCAATGTATAA GGAGGATAACCACTAGGTTCACGGGGCTGTGGCTTGTGTGGAGGATTTTTGGTTTAAAAATCTCATGTACACGAAAAAAA GGGTTTAAGGATATATACCCTATCCCCCTTGCTCGTAATTCTCCTTTCCGAGATATCTTATTTTGTTGGTAGGACAAAAA ATGAATCAATGTGGTATGTATGAATGGTGTTGGTTTTGCATCCCTGGTAATTTTGCTATTGCTAGTCATTTCCAACATAT GATTTGTCTAGACTGGAATGTTGGGGTTTGAAAACTGATCCAGTTCTGTAACTATTATTATATTGTGGAGCCGACATACT GAAATGGAATATTGGTTATGGTTATATTAGCATGTGTTACTACTTAATGGTGTTTAATGGTTTTATTCTTGCTTTGGTAA TATCCGTACATCCCCCTCCCCCACAAAAATCTTCTAGAGCAGACGTTAAATCATATTGTGTTTTTCTTTTTCCAGGGAAG GGGAGATTTCCTCAACTGCATGTAAGATACTTTTTCCTGCTTCAGCCTCCTTTTCATCATCTTGCATTTGACTGAATATG TTATCTCTACTGGAATTTTGAGATGCAGATCATGATTTACTGGGACAACATGCTGTATTTGCTGAACATACAGCTGTATC ATCTGCTAGTCATCCTTGTCCATATATTGCTTACATTGGACCGATACATCCCTCGACCTCCAACTCTGGTGGAACTGTTT CAGAAGATTCTAACTTTCCCCACTGGAATGGTCCACCCAGACCTAGTGACATGCCAACCTCCTACACATATCCTGCAGTA GATCTTCATTATCACAGTTGGGAACACCATTCATCTCATTTCTCTTCTGCCACCAGCCGTCTAGGTGTTGCTGATCAGCC TTCAGTATCAGCTGGTACTCAAAGGCCTGCTAGGGTTGGTTCAGAGGTCCCTCGGTCCGGATCTTTTGTGCATCCCTTCC TTGTCGGTCACAGGTACCTCTTTAGAGTTCTTGTACCTTACCGGGACACTTTTTTGTTTGCAGAAGTTAGTATATTGCTG AATCCTCAAATGTAACTTGATGTGAGACATCATATTATACGCTCAATGTCATATGGTGTCATAAAATACACACTGAAATT GAGTTGAATCATATTATGAAATTTGCTAGGGTCATGAGGTTGACACTCAGATGCTTGTAATGTTGCAGTTCGGGTGCCAG AGCTGGGAACTCTGTTGCATCTTCAATGATCCCTCCTTATCCAGGAAGCAATGCTCGTGCTCGTGATAGAGTCCAGGCTC TTCAAGCATACTATCAGCCTCAGCAACCTCCTAATTCTACGACAATGAGGACACCTGTTGCTTCCAGCAGTCGAAGATCC AATAGTCATTCTCTGTTAGGTCCATTAGCACCAGGGACCTCATCATCAGACAATGCTCGCTTCGTTTACATCCCTAACAG TGTGCCAGGACCAAATTTTCAGGAAGAATCTGATCTGCCCAGCCGCTTCCATCCTTGGGAAAGAGATCACTCGCCTTCAT TGTTATTGAATCAAGTTGGTAGAGCATACCACCAGAGTGCCAGCGGGTCAGATCCAGGTATCAGATCTAGTAGAAGGCAC GAATCAGAAAGAATGCCTTCACAAAATCGGTGATACACTGATTTTATATTGAACATTCAAAATTCATGTATGCATGAGAA ATGTTGCATAATGCTTGGGAATTGATCTTTCTGGCAGCCATGTGGTGACATTGTGATTTGGCTTCTTCCTCTGGTTTTCT CTGCCTTGGAGAGCATAAAAATAAGATGCTTTTCAATTGGGTAAACCAGGTATTTAAAGAACTATTGGGGCATTGTCGAT CTAGTATGCTCATTTGTGGTTGCATATGTTATTGTGGCTCGCTCATGCAACTGTTTTGTACTGAGATACACACTGCGTGG CAAATGTCTTCATAAACTGTTGTGCAAGAACTCGCTGGGGGTTTCGAACTCGCTTGATAACTAGTCAACTAAGGTATTTG CAAGACTGATTTGATTAAATAATCTTTAGTGGTTACTAAATAAGGTGCTTTTGCACCAAATTTTTTTTATAAGCTTGCAC CAAATATAGTACTATAGTTTGGATTAATAGACTATCATATATGCATGCCATGTTTGATGTAGATTTTTTATATATTTATT ATAGAACTAGTTTGTAAGTTTTTAATAAAATTTGAATTTATGAAAAGTATGTTTTAAAAACTTCAAAACATATTAAATAT GATTTTGGACTTAAATAATTTATTGGTCCCTATTTTATGTGGTTCATGTATACAATAACGTTACTTTTTGGTGCCCCAAA AGTTTCACTTTAGTTTATAATCATTTTTGTTTAAACAAATGAAATACAGCTTAACGTGATGTGGCAAACATGTGTTCGCT CCCTCGATCACCTTTCTCTTTGAACCCTCTCTCTCTCCCCCCTTCTCCTTCGCCCTTCCCCCCTCCATCGCTCCCATTGT TCTTCCTCCAACCCACCTTTCTCCCTCTTTCACCCCATCGCCCTCCCTTATCTTCACGCTACTCACCTCTCTCCCTACCC CTTCATGTTTCCTTCTCCCCCTCCCCCCTAATTGAAACACCGAAACTAATTACAGTTTTGATAGCTTGTTGTGGTGCACT TGTAGAAGAGCAAGAGAATGGAGGATTTGGGTTTGGTAGCTCCCATTGTTGCTGGAAAGGTCTTTTGGCACATGGGTATG CTGATGTTAATCCAAAACGCTGAAAATGGAATAAATGAATTGTGTGTAGTTGACAAATCAAATCAAATAAAGCATGGTAT ACTGGGGGAGCAGCAATAGAAGGAGAGTACAAGAGAGGAAAAATAAGCATTTGGTTGTGGTTTGTGGTGCTTTACCTCCC TTGCACTCACATTCAAGCACGTTAAATGGAGCCCATAGAAAAGAAAAGGCCACACAATTAACAAAAGAAATGGAACATAA GTAAGTGTTGAAGAG
CDS sequence (LotjaGi1g1v0770100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCTTGGAAAACTCGATGATGATGACGGTGGAGGAGGTGGTTCACCTAACTCCTCCGTCCCTTGTTCAATTTGCCT CGAGGTTGTTGCAGACACCGGCGATCGATCCTTCGCCAAGCTTCTATGTGGCCATCAATTTCATCTCGATTGCATTGGAT CAGCCTTCAATATGAAAGGGGCAATGCAATGCCCAAATTGTCGCAAGGTTGAGAAAGGTCAGTGGCTTTATGCTAATGGT TCCCGTTCTTATCCAGAATTTAGCATGGAAGACTGGACACATGATGAGGATCTATATGATCTTGGCTACTCTGAAATGTC CTTTGGAGTTCACTGGTGCCCTTTTGGTAACTTGGCCCGTCTTCCTTCATCTTTCGAGGAAGGGGAGATTTCCTCAACTG CATATCATGATTTACTGGGACAACATGCTGTATTTGCTGAACATACAGCTGTATCATCTGCTAGTCATCCTTGTCCATAT ATTGCTTACATTGGACCGATACATCCCTCGACCTCCAACTCTGGTGGAACTGTTTCAGAAGATTCTAACTTTCCCCACTG GAATGGTCCACCCAGACCTAGTGACATGCCAACCTCCTACACATATCCTGCAGTAGATCTTCATTATCACAGTTGGGAAC ACCATTCATCTCATTTCTCTTCTGCCACCAGCCGTCTAGGTGTTGCTGATCAGCCTTCAGTATCAGCTGGTACTCAAAGG CCTGCTAGGGTTGGTTCAGAGGTCCCTCGGTCCGGATCTTTTGTGCATCCCTTCCTTGTCGGTCACAGTTCGGGTGCCAG AGCTGGGAACTCTGTTGCATCTTCAATGATCCCTCCTTATCCAGGAAGCAATGCTCGTGCTCGTGATAGAGTCCAGGCTC TTCAAGCATACTATCAGCCTCAGCAACCTCCTAATTCTACGACAATGAGGACACCTGTTGCTTCCAGCAGTCGAAGATCC AATAGTCATTCTCTGTTAGGTCCATTAGCACCAGGGACCTCATCATCAGACAATGCTCGCTTCGTTTACATCCCTAACAG TGTGCCAGGACCAAATTTTCAGGAAGAATCTGATCTGCCCAGCCGCTTCCATCCTTGGGAAAGAGATCACTCGCCTTCAT TGTTATTGAATCAAGTTGGTAGAGCATACCACCAGAGTGCCAGCGGGTCAGATCCAGGTATCAGATCTAGTAGAAGGCAC GAATCAGAAAGAATGCCTTCACAAAATCGGTGA
Protein sequence (LotjaGi1g1v0770100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLGKLDDDDGGGGGSPNSSVPCSICLEVVADTGDRSFAKLLCGHQFHLDCIGSAFNMKGAMQCPNCRKVEKGQWLYANG SRSYPEFSMEDWTHDEDLYDLGYSEMSFGVHWCPFGNLARLPSSFEEGEISSTAYHDLLGQHAVFAEHTAVSSASHPCPY IAYIGPIHPSTSNSGGTVSEDSNFPHWNGPPRPSDMPTSYTYPAVDLHYHSWEHHSSHFSSATSRLGVADQPSVSAGTQR PARVGSEVPRSGSFVHPFLVGHSSGARAGNSVASSMIPPYPGSNARARDRVQALQAYYQPQQPPNSTTMRTPVASSSRRS NSHSLLGPLAPGTSSSDNARFVYIPNSVPGPNFQEESDLPSRFHPWERDHSPSLLLNQVGRAYHQSASGSDPGIRSSRRH ESERMPSQNR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 410 | 410 | 1.1E-232 | – | |
| PANTHER | 1 | 410 | 410 | 1.1E-232 | – | |
| Gene3D | 19 | 77 | 59 | 3.5E-11 | ||
| SUPERFAMILY | 21 | 70 | 50 | 6.28E-13 | – | |
| SMART | 23 | 67 | 45 | 7.4E-7 | ||
| Pfam | 23 | 68 | 46 | 1.6E-7 | ||
| ProSiteProfiles | 23 | 68 | 46 | 12.135 | ||
| CDD | 23 | 68 | 46 | 4.35101E-9 | – | |
| MobiDBLite | 297 | 410 | 114 | - | – | |
| MobiDBLite | 297 | 342 | 46 | - | – | |
| MobiDBLite | 378 | 393 | 16 | - | – | |
| MobiDBLite | 394 | 410 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0770100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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