Domain Predictions — View

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cd16448

Source: CDD

Description

RING-H2

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 19

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0414100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger ring-type protein; TAIR: AT5G49665.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q55874\|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr\|G7J445\|G7J445_MEDTR Zinc finger (C3HC4-type RING finger) family protein; Found in the gene: LotjaGi1g1v0414100	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR036465 PF13519 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF55 SM00184 SM00327 SSF53300 SSF57850 cd01466 cd16448 mobidb-lite	19
LotjaGi1g1v0414100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger ring-type protein; TAIR: AT5G49665.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q55874\|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr\|G7J445\|G7J445_MEDTR Zinc finger (C3HC4-type RING finger) family protein; Found in the gene: LotjaGi1g1v0414100	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR036465 PF13519 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF55 SM00184 SM00327 SSF53300 SSF57850 cd01466 cd16448 mobidb-lite	19
LotjaGi1g1v0770100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT3G05545.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q8CIK8\|RFWD3_MOUSE E3 ubiquitin-protein ligase RFWD3; TrEMBL-Plants: tr\|A0A151U4Z3\|A0A151U4Z3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0770100	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 PF13639 PS50089 PTHR46798 PTHR46798:SF4 SM00184 SSF57850 cd16448 mobidb-lite	11
LotjaGi2g1v0331700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger, C3HC4 type (RING finger) protein; TAIR: AT2G22680.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|P97280\|ITIH3_MESAU Inter-alpha-trypsin inhibitor heavy chain H3; TrEMBL-Plants: tr\|A0A0L9UXU8\|A0A0L9UXU8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0331700	Domains Coil G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR036465 PF00092 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF59 SM00184 SM00327 SSF53300 SSF57850 cd16448 mobidb-lite	19
LotjaGi3g1v0062100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT4G39140.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q95QN6\|BRAP2_CAEEL BRCA1-associated protein homolog 2; TrEMBL-Plants: tr\|A0A151RGQ0\|A0A151RGQ0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0062100	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 IPR018957 PF00097 PS50089 PTHR31150 PTHR31150:SF30 SM00184 SSF57850 cd16448 mobidb-lite	12
LotjaGi3g1v0165000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger, C3HC4 type (RING finger) protein; TAIR: AT5G60710.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q55874\|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr\|A0A0B2PPB7\|A0A0B2PPB7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0165000	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR032838 IPR036465 PF00092 PF14624 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF111 SM00184 SM00327 SSF53300 SSF57850 cd01466 cd16448 mobidb-lite	21
LotjaGi3g1v0165000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger, C3HC4 type (RING finger) protein; TAIR: AT5G60710.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q55874\|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr\|A0A0B2PPB7\|A0A0B2PPB7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0165000	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR032838 IPR036465 PF00092 PF14624 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF111 SM00184 SM00327 SSF53300 SSF57850 cd01466 cd16448 mobidb-lite	21
LotjaGi3g1v0387800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT4G01270.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q09463\|RNF5_CAEEL RING finger protein 5; TrEMBL-Plants: tr\|K7MEZ9\|K7MEZ9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0387800	Domains Coil G3DSA:3.30.40.10 IPR001841 IPR011016 IPR013083 PF13639 PS50089 PTHR47344 SM00184 SM00744 SSF57850 cd16448 mobidb-lite	13
LotjaGi3g1v0387800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT4G01270.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q09463\|RNF5_CAEEL RING finger protein 5; TrEMBL-Plants: tr\|K7MEZ9\|K7MEZ9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0387800	Domains Coil G3DSA:3.30.40.10 IPR001841 IPR011016 IPR013083 PF13639 PS50089 PTHR47344 SM00184 SM00744 SSF57850 cd16448 mobidb-lite	13
LotjaGi3g1v0403400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Vacuolar protein sorting-associated protein 8 like; TAIR: AT4G00800.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp\|Q0P5W1\|VPS8_MOUSE Vacuolar protein sorting-associated protein 8 homolog; TrEMBL-Plants: tr\|I1KHP6\|I1KHP6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0403400	Domains Coil G3DSA:2.130.10.10 IPR000547 IPR001680 IPR001841 IPR015943 IPR017986 IPR019775 IPR025941 IPR036322 PF00637 PF12816 PS00678 PS50082 PS50089 PS50294 PTHR12616 PTHR12616:SF10 SM00184 SM00320 SSF50978 SSF57850 cd16448 mobidb-lite	24
LotjaGi3g1v0443600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Acyl-UDP-N-acetylglucosamine O-acyltransferase; TAIR: AT4G28260.1 acyl-UDP-N-acetylglucosamine O-acyltransferase; Swiss-Prot: sp\|O54898\|CAC1G_RAT Voltage-dependent T-type calcium channel subunit alpha-1G; TrEMBL-Plants: tr\|A0A0L9UMW3\|A0A0L9UMW3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0443600	Domains PTHR35497 cd16448 mobidb-lite	4
LotjaGi3g1v0489100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger, C3HC4 type (RING finger) protein; TAIR: AT5G60710.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q55874\|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr\|A0A0S3SCP0\|A0A0S3SCP0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0489100	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR032838 IPR036465 PF00092 PF14624 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF111 SM00184 SM00327 SSF53300 SSF57850 cd16448 mobidb-lite	20
LotjaGi4g1v0445100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT1G17970.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q9LZJ6\|ATL5_ARATH RING-H2 finger protein ATL5; TrEMBL-Plants: tr\|A0A061RS76\|A0A061RS76_9CHLO Uncharacterized protein; Found in the gene: LotjaGi4g1v0445100_LC	Domains G3DSA:3.30.40.10 IPR001841 IPR011016 IPR013083 PF13639 PS50089 PTHR15710 PTHR15710:SF72 SM00184 SM00744 SSF57850 cd16448	12
LotjaGi5g1v0224800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT3G05545.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q9BWF2\|TRAIP_HUMAN E3 ubiquitin-protein ligase TRAIP; TrEMBL-Plants: tr\|A0A151U4Z3\|A0A151U4Z3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0224800	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 PF13639 PS50089 PTHR46798 PTHR46798:SF4 SM00184 SSF57850 cd16448 mobidb-lite	11
LotjaGi5g1v0224800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT3G05545.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q9BWF2\|TRAIP_HUMAN E3 ubiquitin-protein ligase TRAIP; TrEMBL-Plants: tr\|A0A151U4Z3\|A0A151U4Z3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0224800	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 PF13639 PS50089 PTHR46798 PTHR46798:SF4 SM00184 SSF57850 cd16448 mobidb-lite	11
LotjaGi5g1v0273400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger, C3HC4 type (RING finger) protein; TAIR: AT2G38970.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q55874\|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr\|G7I519\|G7I519_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi5g1v0273400	Domains Coil G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR032838 IPR036465 NON_CYTOPLASMIC_DOMAIN PF00092 PF13639 PF14624 PS50089 PS50234 PTHR10579 PTHR10579:SF111 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00184 SM00327 SSF53300 SSF57850 SignalP-noTM cd01466 cd16448 mobidb-lite	28
LotjaGi6g1v0200100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT1G75400.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q9H0A6\|RNF32_HUMAN RING finger protein 32; TrEMBL-Plants: tr\|G7JDN4\|G7JDN4_MEDTR RING finger protein; Found in the gene: LotjaGi6g1v0200100_LC	Domains IPR001841 PS50089 SM00184 cd16448 mobidb-lite	5
LotjaGi6g1v0200100_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT1G75400.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q9H0A6\|RNF32_HUMAN RING finger protein 32; TrEMBL-Plants: tr\|G7JDN4\|G7JDN4_MEDTR RING finger protein; Found in the gene: LotjaGi6g1v0200100_LC	Domains IPR001841 PS50089 SM00184 cd16448 mobidb-lite	5
LotjaGi6g1v0279600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger, RING-type; TAIR: AT2G38970.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q9SI09\|XERIC_ARATH Probable E3 ubiquitin-protein ligase XERICO; TrEMBL-Plants: tr\|I1L074\|I1L074_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0279600	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR036465 PF13519 PF13639 PS50089 PTHR10579 PTHR10579:SF47 SM00184 SSF53300 SSF57850 cd16448	15

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd16448	CDD	1	5.26