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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0770700 |
| Transcript ID | LotjaGi1g1v0770700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G09130.1 ATP-dependent caseinolytic (Clp) protease/crotonase family protein; Swiss-Prot: sp|Q8L770|CLPR3_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic; TrEMBL-Plants: tr|I1NBX9|I1NBX9_SOYBN ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi1g1v0770700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134285132..134289412) extracted from Lotus japonicus Gifu genome v1.2.
CTTAACACTCACCCAATACCTATCAGTTAAATCTATAAATGTTAATTTTAACATCTACATTTACTATTTTACCTTCAATC AAATAAACAAAAAGAAAAACACTGGTGTGTCAACACAGAGAGACACACACTCACTCAACTCACGCTTGTTATATTGGATT TTCCGGTTGAAGTGTGAGTGTGTGCACCCGAATTGTTAGCGGAAACATGATGGCTACGTATTTGCGAGTACCCGCAGTTC CCACTTCGATTCCCACTTCATCTTCTTCCTCAAACTCTCAACAATCCCTTCCTTCCAGAAGAAGATGCAGAAATCTCAGG TCATTTTGCTCCGTTAACGCTACAAGAGCCAAAATTCCCACACCCCATCTCAACCCTAATGACCCCTTTCTCTCCAAGCT CGCTTCCGTCGCCGCCTCTTCCCCCGAAATGCTCCTCAACCGCCCCGTCAACTCCGATACCCCTCCTTATCTCGATATCT TCGATTCGCCAACTCTCATGGCTACTCCCGCTCAAGTAATTTATCTTATCTCTATTTCCATACACTTATTTCAAGGTTTA TTGATTTGTGCTATGCACTTTTTTTCATGAATTCTAGATTTGTAGTCATGGTTTTCTTTTGGGTGATTAATTGTGTGGTT GAATTAGGTGGAGAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCACCGCCTGACCTGCCTTCCCTGCTTCTCC ATGGTAGAATTGTTTACATTGGAATGCCTGTAAGTCTGCAATTGTGATTTGGTTTCTACATTCTTGCATTTTAAGTGCCA ATTCCTATGTTTATGAACTTAGGTCCCATTTGGATGAGTTTCTTTGAGCTTATCTTATAGTATAAGCACTTATACAAATG TCTGGAAAAACTTATATAAATAGCTTATGACTTGTCTATAAACTGTTTTGAGTTTATTTTCATAAGTTGCTTAGAATAGC TTATGACCTGCCTATAACGTATTTTGAGTTTATTTCAATACACATCTCAAATTAGCTTATGAATAAACGATAAACAATTA TTTAATAAACGACTATTGCCATAAGCGCTTAATTAAGCTGTTTACCGAAATGCACTCTTAATGGATTATGCTGTGATGAG CTTAAGTGTTGTACTTATCGGTAGTTCTCCTATCAATACCCTTAATTGATTTCATTGTTTCTACCTCTCAGTTGGTGCCG GCTGTTACAGAGCTTATTGTTGCAGAGTTGATGTACCTGCAGTGGATGGATCCTAAAGAACCGATATATATTTACATAAA TTCCACTGGGACTACACGAGATGATGGAGAAACGGTAATTGGCTTCCAGCTCGCAGTTTATACGAAACGTTTGATGTACT ATGGATAATAGGGCACGTTCTGCATGTAGTGCTTATATCAATAGTTTAAAATAATGTACTGTGCTTCCCTCCTTTCTTTG GTCTCATCTCATGCATTTTAGTTCTTTCATTCAGGTAGGGATGGAGACAGAAGGTTTTGCCATCTATGATGCAATGATGC AGTTAAAAAATGAGGTTTGTTTCTTTCCATTAAAAATGCACTTCGGATGATTATTTACTCATATTTCTTGTTGACTTTTG TTGATGATTGTACTGAATAGTAATATGATGAGACAATAAAAGGGGTTGCTTTGGGGTTTTGCAAAATGAAGAATGGCGGA GTAAATATGATGATTGTGATGCTATCACATCAACTACTGGGTTGTTGGATAGATGATTCCTGCTATGGGTATACCATGGT GGCAGTGCCTTCTGTTTATGATGCATAGATTTATTTAATGTACCACAGTTCAAGTTTTATTGATCTATAACCTGGAATTT ATGTTATGTCTTAATCTTAGTAACTTAAATTTAAACAATTCTGATGGACAATAGGTTTATTTTTATTTTATGTTTAATTG TGAGACTTAGAAATGCTGGCAAACCCTCTCTACCACACTCCTTTCATTACTCTCTCTGTTATTGGTTGAAAATCATGTGG GATCCACTAAATCTTATGGACCTCACTCCCAATCTCGTGGGTCTCACTCTTTATTTGATGGAACCTACATGAATTTCAAC CAAGAAACGAGAATGTGTTGAAAAGTGAGTGTTAGAGTGTGTGTTGGTAGCTCTCCTCTTTATGTGTAAGCATTCATCCT TTATGAGCTGTGTGCTTTTCTCTTCACTAACATTTGGATATATCTTTCCTTGTGTATTTGGCTTCTGTGTCTTGAGTAGA TACACACAGTGGCAGTTGGAGCTGCTATAGGTCAAGCCTGTCTGTTACTTGCAGCAGGGACTCAGGGTAAACGCTTTATG ATGCCACATGCAAAAGGTATCGTGAAGAGCCCGTGGTTTTTTAAGTTTGCGAATTCGGTCATATTCCTATAATTTTCACA GTTGTGATACTTCTCTATTAATTACTGTTTCAGCCATGATTCAGCAGCCCCGTATTCCATCATCTGGGTTAATGCCTGCG AGTGATGTTCTTATTCGTGCAAAGGAGGTTAGTTAATTTTATTTGTTCTACATTGCATTTTTTCATATTACGAACAAAAA ACTTTTGTGGTATTTTCAATTTTCTCCCATGTTATTGTTGTCCAGCAATTGGCATGTAATACTACCATACTATTTTTCCT AGTTGCAGATTTGCCTCAAATATTTAAGCAAAGTCTCATTCTGTTTTTCTTTCTTTCCGGTCCTAGTTTCCCCAATTAGC TGTGAAATGTAAACTTGCACACCTTTGTAGTTGTAGAGTCTCCAACTCTATCTCCACTTACATACATAATTGTAAACTCT TGATGGAATACCTAGTCACAGATTTTCACCTTACAGTTAGGAGTATATGTTGAATCTATCTTTGTTTCTTTTCTATAATT AGATGCTAAACGTGAACCTGAAAATCTTTCTTTTACTTTGTCCTGTCTTCTCTTGAAGGTCGTCTATTTTTGACCTAAAT GTCCAGTTTACATCTTTGAAAGTTTGAAACCTTTTTGCTGCTCATTATTTTTGCAGGTGATAATAAACAGGGACACTCTG GTTAAGCTACTTTCCAAACACACAGGAAATGTGAGTATCACTTGTACTAGATGTCATATTTATACGGGGAAGATGTGGCA GAATCTAATATTTCCATTATTTGCTTCTTTTCTATATTACTAGGCAGAGGAAACAGTAGCTAACGTGATGAAGAGACCGT ATTATATGGATTCAACAAGGGCTAAGGAATTTGGGGTCATTGACAAAGTAAGTGCTTATATACATTGTCTCAGTAGTTCA TCTTCTTTAGTCTGTTTTCAGACATGCATTGCTGACCAAACCAATGTTGAAACACACTGTTCCCAGATTCTTTGGCGTGG CCAGGAGAAAGTTATGGCTGATGTTGCTGCTCCAGAGGAATGGGACAAGGGTGCTGGCATTAAAGTTGTGGATGGATTTT AGCTCCTCTTTTATGGATATATCTCTTGTCAATGTAAGTGAATTCAATCTGCCCCTCTCAATTTGTTACTGCAAAATGTG GAATCTTTCGCTTATTGGCGTTGCCGCTGCTCCTATTTTGGAGGATGTAGTGTTAACAGGCTTGCAGCATGAGATTTGAT AGTAAGAACTAAGTAGATGATATATCCCTCGTTATAGCTCCTAAACTCCTGTTGGAAGAAAATTTATAGGAGATTCTTAT CTACTTTATGTGATTAGTTTGCTCTGGCATGTGATTAGTTTTATAAGAATGCTCAGTGCAAGGTGGTTACTCATTTTTGT GGTGTAGGATCTGATCTGAAGTTTCATGATGCTGCCTTGCAGGTCATATCTTTAGAGCGCTGGTACCATGTAAAAGAATG GTTGTCTATGGGTCCTAGAAATGCTCCATAGCTAATCACTGAAATATGAACTGCAGAGTGATGCAGATTTTCCTTACAAT GGAAAAAAAAAGCTAGAGTGATAGTTCATCCATGTGGGGGTATATACTATGTAGTGTTTGGTTCGGATAATTAGTCAACC ATTGATTTCGCACCGGCTCCTTACATAGGAATTGATATTTTCTCTTACACAATCTAATGACAGAATACATGGACAGTTTG TAATCTTAGTTTTAATGTCTATCAATCAGAGATGAGCTAAAAGTTTATCACTGCAAATCACATACTGCGCCACATTCAGT TCATTGTGTTTTGACAGGGAAAATATAGCATTTCGTTACTGTGTTAGAGATCATTACAAACGAATAAGTGATTAAGGCCC CGTTTGGATAAACAGCTTAATTAAGCGCTTATGGTCATAAG
CDS sequence (LotjaGi1g1v0770700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGCTACGTATTTGCGAGTACCCGCAGTTCCCACTTCGATTCCCACTTCATCTTCTTCCTCAAACTCTCAACAATC CCTTCCTTCCAGAAGAAGATGCAGAAATCTCAGGTCATTTTGCTCCGTTAACGCTACAAGAGCCAAAATTCCCACACCCC ATCTCAACCCTAATGACCCCTTTCTCTCCAAGCTCGCTTCCGTCGCCGCCTCTTCCCCCGAAATGCTCCTCAACCGCCCC GTCAACTCCGATACCCCTCCTTATCTCGATATCTTCGATTCGCCAACTCTCATGGCTACTCCCGCTCAAGTGGAGAGGTC TGTTTCATACAACGAACACCGGCCCAGAAGGCCACCGCCTGACCTGCCTTCCCTGCTTCTCCATGGTAGAATTGTTTACA TTGGAATGCCTTTGGTGCCGGCTGTTACAGAGCTTATTGTTGCAGAGTTGATGTACCTGCAGTGGATGGATCCTAAAGAA CCGATATATATTTACATAAATTCCACTGGGACTACACGAGATGATGGAGAAACGGTAGGGATGGAGACAGAAGGTTTTGC CATCTATGATGCAATGATGCAGTTAAAAAATGAGATACACACAGTGGCAGTTGGAGCTGCTATAGGTCAAGCCTGTCTGT TACTTGCAGCAGGGACTCAGGGTAAACGCTTTATGATGCCACATGCAAAAGCCATGATTCAGCAGCCCCGTATTCCATCA TCTGGGTTAATGCCTGCGAGTGATGTTCTTATTCGTGCAAAGGAGGTGATAATAAACAGGGACACTCTGGTTAAGCTACT TTCCAAACACACAGGAAATGCAGAGGAAACAGTAGCTAACGTGATGAAGAGACCGTATTATATGGATTCAACAAGGGCTA AGGAATTTGGGGTCATTGACAAAATTCTTTGGCGTGGCCAGGAGAAAGTTATGGCTGATGTTGCTGCTCCAGAGGAATGG GACAAGGGTGCTGGCATTAAAGTTGTGGATGGATTTTAG
Protein sequence (LotjaGi1g1v0770700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMATYLRVPAVPTSIPTSSSSSNSQQSLPSRRRCRNLRSFCSVNATRAKIPTPHLNPNDPFLSKLASVAASSPEMLLNRP VNSDTPPYLDIFDSPTLMATPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPAVTELIVAELMYLQWMDPKE PIYIYINSTGTTRDDGETVGMETEGFAIYDAMMQLKNEIHTVAVGAAIGQACLLLAAGTQGKRFMMPHAKAMIQQPRIPS SGLMPASDVLIRAKEVIINRDTLVKLLSKHTGNAEETVANVMKRPYYMDSTRAKEFGVIDKILWRGQEKVMADVAAPEEW DKGAGIKVVDGF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 130 | 130 | - | – | |
| MobiDBLite | 12 | 32 | 21 | - | – | |
| PANTHER | 44 | 331 | 288 | 7.7E-149 | ||
| PANTHER | 44 | 331 | 288 | 7.7E-149 | – | |
| Gene3D | 97 | 307 | 211 | 7.0E-51 | – | |
| SUPERFAMILY | 116 | 303 | 188 | 1.91E-44 | ||
| PRINTS | 121 | 136 | 16 | 5.5E-20 | ||
| Pfam | 124 | 303 | 180 | 2.3E-42 | ||
| CDD | 130 | 302 | 173 | 5.75973E-76 | ||
| Phobius | 131 | 153 | 23 | - | – | |
| Phobius | 154 | 198 | 45 | - | – | |
| PRINTS | 161 | 181 | 21 | 5.5E-20 | ||
| Phobius | 199 | 217 | 19 | - | – | |
| PRINTS | 201 | 218 | 18 | 5.5E-20 | ||
| Phobius | 218 | 332 | 115 | - | – | |
| PRINTS | 222 | 241 | 20 | 5.5E-20 | ||
| PRINTS | 281 | 300 | 20 | 5.5E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi1g1v0770700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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