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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0770700 |
| Transcript ID | LotjaGi1g1v0770700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G09130.1 ATP-dependent caseinolytic (Clp) protease/crotonase family protein; Swiss-Prot: sp|Q8L770|CLPR3_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic; TrEMBL-Plants: tr|I1NBX9|I1NBX9_SOYBN ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi1g1v0770700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134285971..134289203) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTACGTATTTGCGAGTACCCGCAGTTCCCACTTCGATTCCCACTTCATCTTCTTCCTCAAACTCTCAACAATCCCT TCCTTCCAGAAGAAGATGCAGAAATCTCAGGTCATTTTGCTCCGTTAACGCTACAAGAGCCAAAATTCCCACACCCCATC TCAACCCTAATGACCCCTTTCTCTCCAAGCTCGCTTCCGTCGCCGCCTCTTCCCCCGAAATGCTCCTCAACCGCCCCGTC AACTCCGATACCCCTCCTTATCTCGATATCTTCGATTCGCCAACTCTCATGGCTACTCCCGCTCAAGTAATTTATCTTAT CTCTATTTCCATACACTTATTTCAAGGTTTATTGATTTGTGCTATGCACTTTTTTTCATGAATTCTAGATTTGTAGTCAT GGTTTTCTTTTGGGTGATTAATTGTGTGGTTGAATTAGGTGGAGAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGG CCACCGCCTGACCTGCCTTCCCTGCTTCTCCATGGTAGAATTGTTTACATTGGAATGCCTGTAAGTCTGCAATTGTGATT TGGTTTCTACATTCTTGCATTTTAAGTGCCAATTCCTATGTTTATGAACTTAGGTCCCATTTGGATGAGTTTCTTTGAGC TTATCTTATAGTATAAGCACTTATACAAATGTCTGGAAAAACTTATATAAATAGCTTATGACTTGTCTATAAACTGTTTT GAGTTTATTTTCATAAGTTGCTTAGAATAGCTTATGACCTGCCTATAACGTATTTTGAGTTTATTTCAATACACATCTCA AATTAGCTTATGAATAAACGATAAACAATTATTTAATAAACGACTATTGCCATAAGCGCTTAATTAAGCTGTTTACCGAA ATGCACTCTTAATGGATTATGCTGTGATGAGCTTAAGTGTTGTACTTATCGGTAGTTCTCCTATCAATACCCTTAATTGA TTTCATTGTTTCTACCTCTCAGTTGGTGCCGGCTGTTACAGAGCTTATTGTTGCAGAGTTGATGTACCTGCAGTGGATGG ATCCTAAAGAACCGATATATATTTACATAAATTCCACTGGGACTACACGAGATGATGGAGAAACGGTAATTGGCTTCCAG CTCGCAGTTTATACGAAACGTTTGATGTACTATGGATAATAGGGCACGTTCTGCATGTAGTGCTTATATCAATAGTTTAA AATAATGTACTGTGCTTCCCTCCTTTCTTTGGTCTCATCTCATGCATTTTAGTTCTTTCATTCAGGTAGGGATGGAGACA GAAGGTTTTGCCATCTATGATGCAATGATGCAGTTAAAAAATGAGGTTTGTTTCTTTCCATTAAAAATGCACTTCGGATG ATTATTTACTCATATTTCTTGTTGACTTTTGTTGATGATTGTACTGAATAGTAATATGATGAGACAATAAAAGGGGTTGC TTTGGGGTTTTGCAAAATGAAGAATGGCGGAGTAAATATGATGATTGTGATGCTATCACATCAACTACTGGGTTGTTGGA TAGATGATTCCTGCTATGGGTATACCATGGTGGCAGTGCCTTCTGTTTATGATGCATAGATTTATTTAATGTACCACAGT TCAAGTTTTATTGATCTATAACCTGGAATTTATGTTATGTCTTAATCTTAGTAACTTAAATTTAAACAATTCTGATGGAC AATAGGTTTATTTTTATTTTATGTTTAATTGTGAGACTTAGAAATGCTGGCAAACCCTCTCTACCACACTCCTTTCATTA CTCTCTCTGTTATTGGTTGAAAATCATGTGGGATCCACTAAATCTTATGGACCTCACTCCCAATCTCGTGGGTCTCACTC TTTATTTGATGGAACCTACATGAATTTCAACCAAGAAACGAGAATGTGTTGAAAAGTGAGTGTTAGAGTGTGTGTTGGTA GCTCTCCTCTTTATGTGTAAGCATTCATCCTTTATGAGCTGTGTGCTTTTCTCTTCACTAACATTTGGATATATCTTTCC TTGTGTATTTGGCTTCTGTGTCTTGAGTAGATACACACAGTGGCAGTTGGAGCTGCTATAGGTCAAGCCTGTCTGTTACT TGCAGCAGGGACTCAGGGTAAACGCTTTATGATGCCACATGCAAAAGGTATCGTGAAGAGCCCGTGGTTTTTTAAGTTTG CGAATTCGGTCATATTCCTATAATTTTCACAGTTGTGATACTTCTCTATTAATTACTGTTTCAGCCATGATTCAGCAGCC CCGTATTCCATCATCTGGGTTAATGCCTGCGAGTGATGTTCTTATTCGTGCAAAGGAGGTTAGTTAATTTTATTTGTTCT ACATTGCATTTTTTCATATTACGAACAAAAAACTTTTGTGGTATTTTCAATTTTCTCCCATGTTATTGTTGTCCAGCAAT TGGCATGTAATACTACCATACTATTTTTCCTAGTTGCAGATTTGCCTCAAATATTTAAGCAAAGTCTCATTCTGTTTTTC TTTCTTTCCGGTCCTAGTTTCCCCAATTAGCTGTGAAATGTAAACTTGCACACCTTTGTAGTTGTAGAGTCTCCAACTCT ATCTCCACTTACATACATAATTGTAAACTCTTGATGGAATACCTAGTCACAGATTTTCACCTTACAGTTAGGAGTATATG TTGAATCTATCTTTGTTTCTTTTCTATAATTAGATGCTAAACGTGAACCTGAAAATCTTTCTTTTACTTTGTCCTGTCTT CTCTTGAAGGTCGTCTATTTTTGACCTAAATGTCCAGTTTACATCTTTGAAAGTTTGAAACCTTTTTGCTGCTCATTATT TTTGCAGGTGATAATAAACAGGGACACTCTGGTTAAGCTACTTTCCAAACACACAGGAAATGTGAGTATCACTTGTACTA GATGTCATATTTATACGGGGAAGATGTGGCAGAATCTAATATTTCCATTATTTGCTTCTTTTCTATATTACTAGGCAGAG GAAACAGTAGCTAACGTGATGAAGAGACCGTATTATATGGATTCAACAAGGGCTAAGGAATTTGGGGTCATTGACAAAGT AAGTGCTTATATACATTGTCTCAGTAGTTCATCTTCTTTAGTCTGTTTTCAGACATGCATTGCTGACCAAACCAATGTTG AAACACACTGTTCCCAGATTCTTTGGCGTGGCCAGGAGAAAGTTATGGCTGATGTTGCTGCTCCAGAGGAATGGGACAAG GGTGCTGGCATTAAAGTTGTGGATGGATTTTAG
CDS sequence (LotjaGi1g1v0770700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACGTATTTGCGAGTACCCGCAGTTCCCACTTCGATTCCCACTTCATCTTCTTCCTCAAACTCTCAACAATCCCT TCCTTCCAGAAGAAGATGCAGAAATCTCAGGTCATTTTGCTCCGTTAACGCTACAAGAGCCAAAATTCCCACACCCCATC TCAACCCTAATGACCCCTTTCTCTCCAAGCTCGCTTCCGTCGCCGCCTCTTCCCCCGAAATGCTCCTCAACCGCCCCGTC AACTCCGATACCCCTCCTTATCTCGATATCTTCGATTCGCCAACTCTCATGGCTACTCCCGCTCAAGTGGAGAGGTCTGT TTCATACAACGAACACCGGCCCAGAAGGCCACCGCCTGACCTGCCTTCCCTGCTTCTCCATGGTAGAATTGTTTACATTG GAATGCCTTTGGTGCCGGCTGTTACAGAGCTTATTGTTGCAGAGTTGATGTACCTGCAGTGGATGGATCCTAAAGAACCG ATATATATTTACATAAATTCCACTGGGACTACACGAGATGATGGAGAAACGGTAGGGATGGAGACAGAAGGTTTTGCCAT CTATGATGCAATGATGCAGTTAAAAAATGAGATACACACAGTGGCAGTTGGAGCTGCTATAGGTCAAGCCTGTCTGTTAC TTGCAGCAGGGACTCAGGGTAAACGCTTTATGATGCCACATGCAAAAGCCATGATTCAGCAGCCCCGTATTCCATCATCT GGGTTAATGCCTGCGAGTGATGTTCTTATTCGTGCAAAGGAGGTGATAATAAACAGGGACACTCTGGTTAAGCTACTTTC CAAACACACAGGAAATGCAGAGGAAACAGTAGCTAACGTGATGAAGAGACCGTATTATATGGATTCAACAAGGGCTAAGG AATTTGGGGTCATTGACAAAATTCTTTGGCGTGGCCAGGAGAAAGTTATGGCTGATGTTGCTGCTCCAGAGGAATGGGAC AAGGGTGCTGGCATTAAAGTTGTGGATGGATTTTAG
Protein sequence (LotjaGi1g1v0770700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATYLRVPAVPTSIPTSSSSSNSQQSLPSRRRCRNLRSFCSVNATRAKIPTPHLNPNDPFLSKLASVAASSPEMLLNRPV NSDTPPYLDIFDSPTLMATPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPAVTELIVAELMYLQWMDPKEP IYIYINSTGTTRDDGETVGMETEGFAIYDAMMQLKNEIHTVAVGAAIGQACLLLAAGTQGKRFMMPHAKAMIQQPRIPSS GLMPASDVLIRAKEVIINRDTLVKLLSKHTGNAEETVANVMKRPYYMDSTRAKEFGVIDKILWRGQEKVMADVAAPEEWD KGAGIKVVDGF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 129 | 129 | - | – | |
| MobiDBLite | 10 | 30 | 21 | - | – | |
| PANTHER | 43 | 330 | 288 | 7.7E-149 | – | |
| PANTHER | 43 | 330 | 288 | 7.7E-149 | ||
| Gene3D | 96 | 306 | 211 | 6.9E-51 | – | |
| SUPERFAMILY | 115 | 302 | 188 | 1.91E-44 | ||
| PRINTS | 120 | 135 | 16 | 5.4E-20 | ||
| Pfam | 123 | 302 | 180 | 2.2E-42 | ||
| CDD | 129 | 301 | 173 | 3.80975E-76 | ||
| Phobius | 130 | 152 | 23 | - | – | |
| Phobius | 153 | 197 | 45 | - | – | |
| PRINTS | 160 | 180 | 21 | 5.4E-20 | ||
| Phobius | 198 | 216 | 19 | - | – | |
| PRINTS | 200 | 217 | 18 | 5.4E-20 | ||
| Phobius | 217 | 331 | 115 | - | – | |
| PRINTS | 221 | 240 | 20 | 5.4E-20 | ||
| PRINTS | 280 | 299 | 20 | 5.4E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi1g1v0770700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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