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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0770900 |
| Transcript ID | LotjaGi1g1v0770900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell cycle checkpoint control family protein; TAIR: AT3G05480.1 cell cycle checkpoint control protein family; Swiss-Prot: sp|Q9Z0F6|RAD9A_MOUSE Cell cycle checkpoint control protein RAD9A; TrEMBL-Plants: tr|G7KXM9|G7KXM9_MEDTR Cell cycle checkpoint control RAD9A-like protein; Found in the gene: LotjaGi1g1v0770900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134308955..134315176) extracted from Lotus japonicus Gifu genome v1.2.
CTTTGTTTTCCGTCGCAAACAATCAATTTCTCTCTGCTTATTTTTTTGATAAAAAGATTTTCGATTGGAGCGCGTTATAT TTCCTTTCCCTTTCCCGCCAGGCAGAGGAGAGGAGGAGGAGCGGGGTGAAAGAAATGGAGTTGACGTTAAGCGACAACGC TCTGAAAACCTTCGCGCGATGCATCACCTGTCTCGCGCGTATCGGAAATGAGCTCTCCATTCAAGCTTCTCCCTCTCAGG TAACATCAACTATTGATTTTAGGGTTTTGGAAGCAAATTCACAGTTGCTATTGATTTTTCACAGCTTCTTCTGCACACTA TCAATTCTTCACGATCTGCATATCAATCCATCACTTTCAAACCTGGATTCTTCGACGTCTACACCGTTTCCACTAACCCC GTGCAATGTAGTGTGCTTCTCAAGGTTTTTGTGGAATGCTCTTTTCTCATTCAACATTTTTTTTGTTTGCAAATGAAGAG TTTTTGTTCTCACTCGCGTTCGCATACTTTGATTAGGCCGTTTGTGCTGTTCTTAGGACACCGATTGCAAATATTGATCA CTTGACCGTGAAACTGCCAGATCCAGATGCTTCCAAAGTTCAGTGGATTTTGGACTGCTACAGTGGTAAGCTACTCAGTA CTTCAATACACTCACAATCTCTGGTGGTTGGCTAACAATGAAAGAATCATGTTTGTATGTTAGTAATGTTACTATGAGAG ACTAATCATTTACTTGTCTTTTGTAACTGCAACCTGGTTAATGTATTTGGTTTGTAGATCTAAATTAGGTAATTGTTATG GAATCAAAGCTGCTTTTTACTGATAATATGGTCTTTTTTTGGTTAGAAGTGGACTGAATAATGTGACATTTAATTCTAGC TCAGTGTTGTCTAACATTATTTCGGCGAGTAGCTTAGGGGTTTGCTACAGCCCATGACTTTATGTAACTCTAACCAGAAA ATTTGAAATTGGCCGCATATGAAGTCTTGAAACTGTATAGTTGCAGTTTTTTCTTAAAGTGGACTCTAGGATGTAGTGTG TGTTTGAGAAAGCTTCCAACACACATATATGTTTCGGATGTCAAAGACTTGAAAGAGAGGGAAAGGGTCTATTGGAGTTC AACGGAATTTCACATCAAGCCAAACACAATAGTAGTAATTCGAAGCCTACTCTAGACATAACATAATACTCAGGGCCAGG GGTACTATGTAAACGGTGTTAGGCATCTCATGATATATGTGCCTATTTTCTCATCACTCTACAATTTATTTATGTGTGTG TGTGTTTCACCTTATTGTGGGTTAAAATGAATGTTATTTATTAACTACTGCAGGTATGAAGAAAACCTACTGGATTACTT GCAATGTAGAACCTGACATACAGAACTTGTCTCTTGATAGGCAAAAATTTCCAAGCAACTTTGTCGTGAGGCCTCGAGAT ATGAACAGGTTACTTTCTAATTTTCAGTCATCTCTTCAAGAGATCACTGTTATTGCAACAGAACCTGCTTCACTACCTCC TGATTCAGCAAATGACATTGGTGGAAAGGCTGTTGAACTTCGAAGTTATATTGACCCAACCAAAGGTAAAGAAGATGCTT TTGTAGTAGCTTCATTGGAAACAGTCATTTTATGCACAGTGTTTACATGGCAGACAATGACTCGTCGCTACACACCCAGC TGTGGATAGATCCTAAAGAGGAATTTTTGCAGTATGTTCATACTGGAGATCCGATAGATGTGACTTTCAGTGTAAAGGAA CTAAAGGTAAAGTAAACCAATCCTTTTGTATTTGGTTGACAGAAGTATCTTGGGCAACTGTTGACACAGACTACATTTAC CTGATATTTGGATTTTTATAATGTTATCCTCCATTATTTCTTTATTCTTGCTTTCTCCCATGCTAAGGCTAATTTATTGT TTTTAAAGGCACCTGATGTTCTTGTCATCAATCTGCAGGCATTTCTTTCATTTTGTGAGGGCTGTGAAGTTGACATCCAT TTTCATTTTGAGAAAGCTGGCGAGTAAGATATAATGATATATTTAGTTTCGGACATGATTTACACTCCTTGTCCTCTAAT ATATAAGTTGTACGATTGATGGCATGCATTTTACCAATGAATATGAATGCATGCTCTACATTTTAAGTTTTTCATTTGTC AGTGTACATGTCATTGTCTAGTGAACTCCAAATAAAATCAAGGAAATGAGAAAAATTGCAGAGATTGACTTGTCATATAG GGTTTACAGTGGAGAAACATCCTGCACACACAAACATTGAATTACAAAAAAACCTATTTTTCTTACATTCCATATTTTAT GATTAGAGTATTTGATAGTTATGAATTATGATGTGTTATTAATCTTTATTCTTGGATGATATTGTGATTGCCAAGCAGAC CTATCCTTATGGCACCTAAATTTGGTTTGGAAGATGGATCTCACTCAAATTTTGATGCGACCCTTGTACTGGCGACCATG TTAACATCTCAACTACATGAAGGCGCTGCCTCAGAACCTCTGGTGGTAGATGCCAGAACACATGCTCAAACTGAAGAAAG AAATGGATCTCATGCGGAGGAAGAAAATTGCAGAACAAATACATCAGAGCTTCAATCTGACCACACCCGTGTTTGGTCAG ACCTCTCAGGTAATTTCAATATTGAGATGGATAATATGTTATGGATCTAAATTCATATTTGTTTTTTCATTTTGCAGCAA CTGCAGTTAAAAATATGAGTGGTTTGGAAGAAAGGCCGGCACAAGAACAAACAGTTTTGAATGATAATGAGCAAAGAGAA ATTCAAAGGATTAGTACAATACGAATTTCAAGAAAAACATCCGCTGCGGGAAATAATCCCACTGGTTCCAACATGTATCC TTTATGTCACCATTTACCTCTGTATCTTAGCATTTCCAGCACCGTGTTTCACTTTCCCCACAAAGTTGTGCCGGCAAATA TTACAAATGCTGCATTTCTTACCATCTGTTATCTGGATAAAATTTTTAGAGCAGTTACAAAGCATGCATGCTCATACCAG ACCCTAGGTATGAAGCCTTTTATTGGGGTTATAAATTAGCATGCGAGTCCCTTTCATTTAAGCAATTGCAAACTGCAACA TTCTCGCAAAATTGTTGAGATGGCTGTTGTTGAAGGTCTAAGAAGCATAGGCACTTACAAAGAGCAGTCACACATGCTCA TACTCATATTGAACATTTCATGGACACTAATTTCTAGCTGTATTTTACAAACTTCTTTACTTTTATTTTTTGGACTTATA TGCCAATATGGTTGGAAATATCAAAATAATCAGAAAAATTACGGCATTTTAATATTTTATCATGTCTACTATGACTAATG TTTACTTTTAAAACATTAATTCTATCTTTTAATTTAAGATTCAGGTTGTATTAACTGTTTACTAATTATATGTTCTATTT CAGTGGTATTGTGCTGTATCGGTGATTTTCAGCTTACGGTTTAGTTGGGATTTTTATGACCTAATTGTTGGATTTAAGTA TTTTTTACCTTGACTGATATCTCAGCTGCCGACCAACTGAAAAAGATAGTGTGCAAGCGCCTCAAGGTTAGCTAACCAGG CTATTTAACGAGCTTATCTGACAGTCTTTTAGTTCTTTCAGTAACTGATATAATCAATACAATTATCCAGATATGTTGCA AGATAATAATCAAGCGTTTTCACAGCATCATCCCAGTAATTGGGTAGATGCTGAGGAGGAGGATGAAGATGATGCGAATG AGAATGAGCAGTACATTCAGGCAACACCACCATATTATGAAGATTAGAACTAGAACTATACTGCAATGGTTCTTCTTTAT CTTGGTAAGTGTTCAGGCCATTCTTGTAACATGTTGCTCCAAGTGTTTCTACTTGAGTCAGTAACCATTAACCATTCATC ATCTAGACTTTAAAATGACTGAACAGCCATACATTGCTTATTTTCTTGTACTTTGATGTGATTAAATCTGCCAGTTAAAA GCACTGATTCTTGCCTTTAGCAACCATATAATATTTCACGCATTAATGCTGCATCCTTTTATCATATACAGCTTCCCATA TCCATGCACCAAAATTTTGATTGCAAAGTACAGTCACTTGAATTGGGCTGAATGGCCTAATTTCTAAGTGTGTTCGGATT TCTAGTACATCCACCTAAAAGTATTTTTTTCTTCAATTCATTGTGAGACATGGGTTTCTGTTCGAACAGCAATCCGATAA TAAAGCTTGGCCATAATATTCTCCGTACTCAGCCTTAGGGTGCACAAGTAACCATGCCTTTCTCCTCATTCGACCCTGTT CTTATAATGTTATTTATTACATTGCCTAAACCGTACAACTCATTCCTTTCCTAGGTCCTAACTTCTTTATTGCCATAATC ACAATTCCTTAATGATGTTTCCACTTCCATAACCATGATTCCTTGATAATGTTTCCACTGCCATAACCATGATTTCTTCC TTGAATTCGCCTAGTCCAACTAATCGGTCGATCAGTCATAAAATGAGAGAACAATGTGTCTTCCTGATTTTGGATGACTA TTATCGCAGCTCTAGTGGTTCAATCAGTCTCCATGTAGGAACAATTTCCATTAACAGTACTTTTAACCATTGCTAACAAA AATCCAAACATGTACTAAGCCCACAATTGATCTACCTTTTTGGCTTCCCGTACAGTGAACGATACAGAATATGATCTTAT GATATGGCATATCTTTTCTCTCCTACAATTTTATCCTGACTCCCTTATGTAACCTCGAACTTTACACTAACTAATGAACA ACTGAATGCCAGTGATGATTGCATGGTAAATGGCTCAAGGATCCAAGTCATTAGCCATTTTACAGCACCTGATGATATAG GAACTAGTTAAGGAAGCATGATATAGTCCAGAAAAGACAAATGAAGTGATCTGACTGTGAGGAACATCTTAAACAAACCT TGTAACTTTGTGATCCTAAGTGTTAAACAGCACCTTCCTTATGTGTACAAATGGTTAAGGAAAAAGTGGGTGTAATCTCC AATACAGGATCTTAACTACGGGGTCCTCTTAGGATGGGGTTGTTTAACATTTGGGGTAAATTAGACACTCCCTATTTATA GATACTCTTTTTATTCATGACATTTAATAGAACTTTAACATGTATCGGATGTTTCCAGCAGCACGTATCTGGTTGCAAAA CTGTTTTTATGAGTGTAACTAAAAAGAATTCATGTGTATCCTCATTTGGGTCCTAGTTTTGTTAGATAGCTTCCGATTTG ATGGTTCGTGCATCTGGTACATGCTGCAGATGTGCTCTGGTATTTGCATGTTGATTGCCTAAGTCTGGTATTTTTTATGT TACTTTATAATTTTGATTGCCTTATAGTTTACTTAATATATTATATTTATATTAAAAATATTTACTTATTACCGTTTATT CATAATTCAACTATAGTTAAACCAGTGAAACAGATCATACTTTTCCTGGTCAATAACATGCCTAATTTTGAAGAGTAGCT TACAGGGGGAATAATGCCAATGAATGAACACAAACAACATTGAAATATATATAGTAAGTACTGCGTAAAATAGTTTGTAC TATTCATGTATACTAATTAAATTCATATAGTAAATTTGACATTTTATAGTTGCTCCAAACAATTTATTTGCCATGTCTCA TCTTTCTGCTGCATCTTTTGCCAGCTATTTTTGTTGACTATTTGGAGGCAAGTGAGCTTGAACCCCTCAACAGAGCCCAC CAAACTAATCCAGAAGGTTAAGGAAGTAGGTACTTGCATATTATATTACATTGGAGCATGGATTTTATGCAAAATTAGTT AAGGGAATTCAACTTAATTGTATTGTTCAACGGTTTATACCAAAATTCCATGATTGTACATTTGACTTTGATTTTCTGGA TTCAAAATTCCCTACTTTTATGTCTCCAATGCTCCTAGTCTCTAAATCATAGTTACTTGACCAAGAGCTATTACACCCTT ATTCTTTAATCTCATTCTATATATTGTATATTGAAAATTATATAATTAGCATATTTTATTGTGTAATAAAGAAAGAAGCA AGGTATGAAAGGAATGAATACCTAGTCTTTTTTCATAATTGATTTGTTACGCGGATAATAAATTCTAATACTACATGTTT GGTAATTATTTTTGTAGAGAATAACAAATTTTTAAGTTCTTTCGAACAACTACAGAAAAAAC
CDS sequence (LotjaGi1g1v0770900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTGACGTTAAGCGACAACGCTCTGAAAACCTTCGCGCGATGCATCACCTGTCTCGCGCGTATCGGAAATGAGCT CTCCATTCAAGCTTCTCCCTCTCAGCTTCTTCTGCACACTATCAATTCTTCACGATCTGCATATCAATCCATCACTTTCA AACCTGGATTCTTCGACGTCTACACCGTTTCCACTAACCCCGTGCAATGTAGTGTGCTTCTCAAGGCCGTTTGTGCTGTT CTTAGGACACCGATTGCAAATATTGATCACTTGACCGTGAAACTGCCAGATCCAGATGCTTCCAAAGTTCAGTGGATTTT GGACTGCTACAGTGGTATGAAGAAAACCTACTGGATTACTTGCAATGTAGAACCTGACATACAGAACTTGTCTCTTGATA GGCAAAAATTTCCAAGCAACTTTGTCGTGAGGCCTCGAGATATGAACAGGTTACTTTCTAATTTTCAGTCATCTCTTCAA GAGATCACTGTTATTGCAACAGAACCTGCTTCACTACCTCCTGATTCAGCAAATGACATTGGTGGAAAGGCTGTTGAACT TCGAAGTTATATTGACCCAACCAAAGACAATGACTCGTCGCTACACACCCAGCTGTGGATAGATCCTAAAGAGGAATTTT TGCAGTATGTTCATACTGGAGATCCGATAGATGTGACTTTCAGTGTAAAGGAACTAAAGGCATTTCTTTCATTTTGTGAG GGCTGTGAAGTTGACATCCATTTTCATTTTGAGAAAGCTGGCGAACCTATCCTTATGGCACCTAAATTTGGTTTGGAAGA TGGATCTCACTCAAATTTTGATGCGACCCTTGTACTGGCGACCATGTTAACATCTCAACTACATGAAGGCGCTGCCTCAG AACCTCTGGTGGTAGATGCCAGAACACATGCTCAAACTGAAGAAAGAAATGGATCTCATGCGGAGGAAGAAAATTGCAGA ACAAATACATCAGAGCTTCAATCTGACCACACCCGTGTTTGGTCAGACCTCTCAGCAACTGCAGTTAAAAATATGAGTGG TTTGGAAGAAAGGCCGGCACAAGAACAAACAGTTTTGAATGATAATGAGCAAAGAGAAATTCAAAGGATTAGTACAATAC GAATTTCAAGAAAAACATCCGCTGCGGGAAATAATCCCACTGGTTCCAACATCTGCCGACCAACTGAAAAAGATAGTGTG CAAGCGCCTCAAGATATGTTGCAAGATAATAATCAAGCGTTTTCACAGCATCATCCCAGTAATTGGGTAGATGCTGAGGA GGAGGATGAAGATGATGCGAATGAGAATGAGCAGTACATTCAGGCAACACCACCATATTATGAAGATTAG
Protein sequence (LotjaGi1g1v0770900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELTLSDNALKTFARCITCLARIGNELSIQASPSQLLLHTINSSRSAYQSITFKPGFFDVYTVSTNPVQCSVLLKAVCAV LRTPIANIDHLTVKLPDPDASKVQWILDCYSGMKKTYWITCNVEPDIQNLSLDRQKFPSNFVVRPRDMNRLLSNFQSSLQ EITVIATEPASLPPDSANDIGGKAVELRSYIDPTKDNDSSLHTQLWIDPKEEFLQYVHTGDPIDVTFSVKELKAFLSFCE GCEVDIHFHFEKAGEPILMAPKFGLEDGSHSNFDATLVLATMLTSQLHEGAASEPLVVDARTHAQTEERNGSHAEEENCR TNTSELQSDHTRVWSDLSATAVKNMSGLEERPAQEQTVLNDNEQREIQRISTIRISRKTSAAGNNPTGSNICRPTEKDSV QAPQDMLQDNNQAFSQHHPSNWVDAEEEDEDDANENEQYIQATPPYYED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 444 | 444 | 1.9E-152 | – | |
| PANTHER | 1 | 444 | 444 | 1.9E-152 | ||
| PIRSF | 1 | 446 | 446 | 7.0E-99 | ||
| Gene3D | 2 | 282 | 281 | 1.6E-72 | – | |
| SUPERFAMILY | 10 | 119 | 110 | 7.33E-13 | – | |
| Pfam | 13 | 282 | 270 | 1.3E-74 | ||
| MobiDBLite | 303 | 332 | 30 | - | – | |
| MobiDBLite | 303 | 323 | 21 | - | – | |
| MobiDBLite | 377 | 419 | 43 | - | – | |
| MobiDBLite | 377 | 449 | 73 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | DNA damage checkpoint | A cell cycle checkpoint that regulates progression through the cell cycle in response to DNA damage. A DNA damage checkpoint may blocks cell cycle progression (in G1, G2 or metaphase) or slow the rate at which S phase proceeds. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Cellular component | Checkpoint clamp complex | Conserved heterotrimeric complex of PCNA-like proteins that is loaded onto DNA at sites of DNA damage. |
Expression pattern of LotjaGi1g1v0770900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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