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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0774200 |
| Transcript ID | LotjaGi1g1v0774200.6 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G05240.1 mitochondrial editing factor 19; Swiss-Prot: sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240; TrEMBL-Plants: tr|I1JRE3|I1JRE3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0774200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134677709..134681358) extracted from Lotus japonicus Gifu genome v1.2.
GTCATGTCCTCATGGATAGGTGAATAATAACAAGCAATCAAATCAGGTTGTCTTGCAGGATTTGATGAACCAAAAAAATG ATCAAGGATGATACACCAAAACACCATTATCTCTCTGCTAGCAAGATGCAAAACCATGAGCGAGTTGAAAAAGTTGCATG CTCTAATAGTGACAATCCCAACCATTAGAAGCATAGTTCCCCTGAGCAAGCTTATTGATTTCTGTGTTGATTCAGAATTT GGGGACATCGATTACGCACACTTAGTCTTTCGCCATATTGATTCACCTAGCGTTTACATTTGGAACTCCATCATAAAAGG TTATGCAAATGGTGACAATCCAAAAATGTCTTTGCTTCTGTATAGGCAAATGATACAGAGTGGATATTCCCCTGATCATT TCACTTTCCCATTTGTGCTCAAAGCAAGTTCTGTAGTTTCTGATCAAGATTGTGGGAAATGCATTCATAGCTGCATGGTG AAAACTGGGTTTGAAGCAAATGCTTATGCTGCTACTGGGTTGCTCAATATGTATGTATCATGGGGAGATATGAAGTCTGG GTTGAAGGTGTTTGATAAAATTCCCAAGTGGAATGTGGTTGCTTGGACTTGTTTGATTGCTGGGTATGTGAATGATAATC AGCCACTTGCAGCTTTGAAGGTGTTTAAAGACATGGACTATTGGGATGTGGAGCCTAATGAAATTACCATGGTGAATGCT TTGGTTGCGTGTGCTCGAAGTAGAGACATTGATACCGGGCGGTGGATTCACCAACGGATTCGCAAAGCTGGTTATGATCC CTTTGTGTCCATGTCTGATAGTAACATCATTCTTGCGAGTGCAATTGTTGAAATGTATGCTAAATGTGGTTGCTTGAAGA CTGCAAGAGAGTTGTTCGACAAAATGCCTCAGAGAAACATTGTTGCATGGAACAGCATGATCAATGCTTACAATCAGTAT GAGAGGCATCAAGAGGCGCTGGATCTCTTTTTTGATATGTGGGGTGCTGGGTTTTGTCCTGATAAGGCTACATTTCTGAG TGTCTTGAGTGCTTGTGCCCATAGGTGTGCTCTAGCATTGGGAAAAACGGTTCATGCTTATATATTGAAAAGCGGCATTG GAACAGATATTGCTCTTGCAACGGCTCTTCTGGACATGTATGCCAAGACTGGTGAACTAGGAAATGCGAGGAAGATCTTT AATAGTTTGGAAAAGAAAGATGTGGTGGTGTGGACTAGCATGATTAATGCTTTAGCCATACATGGTCAAGGAAATGAAGC GTTGAGTATGTTCCAAGTAATGCAAAAGGATTGTTCTCTAGTCCCTGATCATATTACTTATACTGGAGTTCTGTTTGCAT GTAGTCATGCTGGATTGGTTGAAGAGGCTCAGAGACAATTTAACCAAATGAGAAAGATGTATGGTATTGTGCCAGAACGA GAGCATTATGGTTGCATGGTTGATCTTTTGAGCCGCGCGGGTCATTTCAGAGAGGCAGAAAGATTAATGGAGACAATGAA GGTACAACCAGGTATTGCCATATGGGGTGCTCTTTTGAATGGCTGTCAGATTCATGAAAATGTCTCTGTGGCTAGTCAAG TGAAAGCACAATTAACAGAGCTAGAACCTGGTCAAAGTGGAATCCATGTTCTTCTGTCTAATATATATGCTATGGCTGGG AGATGGGAAGAGGTAAATGTAACTAGAAAAGTGATGAAACAGAAAATGGTTACAAAGACCATTGGCCATAGTTCAGTTGA AATGAAGCTTCTAAGCTGATAATCGTTGTAGATTCAAATTGTTGTATCAAATGATGAGTGTTAATATCTATGAGCCAAAG TAAGGTATAAGACAGTAATGAAGAACTATATTACATTCAAAATTTTGGGTTTGTGTGTGTTGTTGGGGGGGGGGGGGGGG GGGAGTTCTATGCAACATATTCTCATTGTGAACACTGACTTTTGAAGTATATCTCTGAAACAAGTAGATTAAACAGCATG TTTATGCCACAAGTTAACTATTGTTCTTTCCCCATATAACTAATAAACATGTTAGTTGTTATGTTTACCAACTGAATCTG AATAAGATGACTTTGTGTAAGTAGTAGGCCTATCTAGTTCATCACCATTATCTGGACAACTGAACTTAATATAGTCAGTA ATACTCATTTGGGATGTAGGTAGACCACTCCTAAAAGCTTGACTATTAACAGAGAGAGACACTATGTCAGAATGTGAGTT AAGTTTTTCACACCCTGCGGATATGGGATTAACTCCTGCATCCATGTTGTCAAGCTGGAAAAAGTGGTCCATCCACATCA GAGGTGGACAAACTGGGCTCTAATTGGTGTGGGTCAAAGATCGAAATGAATAAGGAAGTTCCATGCCATCATTCTAGGAG ATGACTTACAATCCCTTGGTTTATACACTGGAAACAACGATTTTTTTTTAAATAATGTGGATAATTGGCAATAGTTTTTA TAAAATTGCCAAATACAATCACCATGAAAAGTACAACTAAATCATCTAATGGCCACTACATTATTTTAGTTTTTGTCCTG CTTTGCTGCTCCGGCGTCAATTTGATTCCATGTCTGGTGTTCTTTTTTCTTTCTTTAGTAGCTTATATCCTCTATATGAT TATCTGTTGATTTTGTTTCATATCTCATTTATTTATGGAAACACACCCCTGGCTATATAAATACTGCCATACTGGTGTTC CAAGAAGAGGATGTATGCCACTTCAAACTTTGGAGGACACATGTTTTACCGTTATGCCTTACTAAAAAACGAATTTTATG TGGTTTAGCTGTGTGGCAGAATGGAATTTTGACTTTACTTTAAATGTACGTAGGTACGGACCATTCTGGATTTGCACTAC CTTAATATTTGTAGCAGCATCCATTGGCACATTCGTGACATATCTAGCTCACAAACTGAAGGACAAGGAATGGAACTATG ACATAAACCTAGTGACTTGGTCTGCTGGTCTGTTTTATGGCTATGTTACCGTTGTTCCTCTTTGTCTGTATGTAATCCTC AAATACTTCTCTGCACCAGCAAGCCTTGTCCAACTATTCTGTCTATATGGATATTCCTTGTTTGTGTTTATTCCAGCAAT GGTAAGCTTCTGCACTTCAATTTCTCCGTCTTATTTTAACTTCAACAATGAAATTTGACATTATCGCAGTACTGAATCCT CATAAGTGAAACCCTTTGTTTGCAACAGTGTATGTCCGTTGTGCCACTGGAGATATTTAGATGGGTGATTGCAGGTGTGG CGGGACTCATGTCAGCAACATTTGTAGGGCTTAACCTCCGGGCACATATCATGTCAGCAGGTGAAAGGTGGTTCTTGATT GTTGCTGCCATTTTTCTGTTGCAACTGGCTCTAGCCGTTGTATTAAAGATGTATCTCTTCACTGTATCAGTTTAAGAGGA AAGTGGACAGTGTGAATGAAATATATGTAAGGAAGAAATAGCTTTTTGGCCCTTTAGGTTCCTATTAATACAATTTGTAG CTGAATTGTAATTCACAGATAAAACCATTGTGTATTCATTCATTTATGGCAATATAGAGGCGAATAACCGGTGGTTTTCA TAACAAGAACCATTTGTTAACATCACAAGTGTATTATACGTGTGCCTTGG
CDS sequence (LotjaGi1g1v0774200.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATACACCAAAACACCATTATCTCTCTGCTAGCAAGATGCAAAACCATGAGCGAGTTGAAAAAGTTGCATGCTCTAAT AGTGACAATCCCAACCATTAGAAGCATAGTTCCCCTGAGCAAGCTTATTGATTTCTGTGTTGATTCAGAATTTGGGGACA TCGATTACGCACACTTAGTCTTTCGCCATATTGATTCACCTAGCGTTTACATTTGGAACTCCATCATAAAAGGTTATGCA AATGGTGACAATCCAAAAATGTCTTTGCTTCTGTATAGGCAAATGATACAGAGTGGATATTCCCCTGATCATTTCACTTT CCCATTTGTGCTCAAAGCAAGTTCTGTAGTTTCTGATCAAGATTGTGGGAAATGCATTCATAGCTGCATGGTGAAAACTG GGTTTGAAGCAAATGCTTATGCTGCTACTGGGTTGCTCAATATGTATGTATCATGGGGAGATATGAAGTCTGGGTTGAAG GTGTTTGATAAAATTCCCAAGTGGAATGTGGTTGCTTGGACTTGTTTGATTGCTGGGTATGTGAATGATAATCAGCCACT TGCAGCTTTGAAGGTGTTTAAAGACATGGACTATTGGGATGTGGAGCCTAATGAAATTACCATGGTGAATGCTTTGGTTG CGTGTGCTCGAAGTAGAGACATTGATACCGGGCGGTGGATTCACCAACGGATTCGCAAAGCTGGTTATGATCCCTTTGTG TCCATGTCTGATAGTAACATCATTCTTGCGAGTGCAATTGTTGAAATGTATGCTAAATGTGGTTGCTTGAAGACTGCAAG AGAGTTGTTCGACAAAATGCCTCAGAGAAACATTGTTGCATGGAACAGCATGATCAATGCTTACAATCAGTATGAGAGGC ATCAAGAGGCGCTGGATCTCTTTTTTGATATGTGGGGTGCTGGGTTTTGTCCTGATAAGGCTACATTTCTGAGTGTCTTG AGTGCTTGTGCCCATAGGTGTGCTCTAGCATTGGGAAAAACGGTTCATGCTTATATATTGAAAAGCGGCATTGGAACAGA TATTGCTCTTGCAACGGCTCTTCTGGACATGTATGCCAAGACTGGTGAACTAGGAAATGCGAGGAAGATCTTTAATAGTT TGGAAAAGAAAGATGTGGTGGTGTGGACTAGCATGATTAATGCTTTAGCCATACATGGTCAAGGAAATGAAGCGTTGAGT ATGTTCCAAGTAATGCAAAAGGATTGTTCTCTAGTCCCTGATCATATTACTTATACTGGAGTTCTGTTTGCATGTAGTCA TGCTGGATTGGTTGAAGAGGCTCAGAGACAATTTAACCAAATGAGAAAGATGTATGGTATTGTGCCAGAACGAGAGCATT ATGGTTGCATGGTTGATCTTTTGAGCCGCGCGGGTCATTTCAGAGAGGCAGAAAGATTAATGGAGACAATGAAGGTACAA CCAGGTACGGACCATTCTGGATTTGCACTACCTTAA
Protein sequence (LotjaGi1g1v0774200.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIHQNTIISLLARCKTMSELKKLHALIVTIPTIRSIVPLSKLIDFCVDSEFGDIDYAHLVFRHIDSPSVYIWNSIIKGYA NGDNPKMSLLLYRQMIQSGYSPDHFTFPFVLKASSVVSDQDCGKCIHSCMVKTGFEANAYAATGLLNMYVSWGDMKSGLK VFDKIPKWNVVAWTCLIAGYVNDNQPLAALKVFKDMDYWDVEPNEITMVNALVACARSRDIDTGRWIHQRIRKAGYDPFV SMSDSNIILASAIVEMYAKCGCLKTARELFDKMPQRNIVAWNSMINAYNQYERHQEALDLFFDMWGAGFCPDKATFLSVL SACAHRCALALGKTVHAYILKSGIGTDIALATALLDMYAKTGELGNARKIFNSLEKKDVVVWTSMINALAIHGQGNEALS MFQVMQKDCSLVPDHITYTGVLFACSHAGLVEEAQRQFNQMRKMYGIVPEREHYGCMVDLLSRAGHFREAERLMETMKVQ PGTDHSGFALP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 121 | 121 | 8.1E-10 | ||
| PANTHER | 5 | 135 | 131 | 1.9E-102 | – | |
| ProSiteProfiles | 68 | 102 | 35 | 10.764 | ||
| TIGRFAM | 70 | 103 | 34 | 5.7E-6 | ||
| Pfam | 71 | 99 | 29 | 5.2E-4 | ||
| ProSiteProfiles | 103 | 137 | 35 | 5.064 | ||
| PANTHER | 122 | 231 | 110 | 1.9E-102 | – | |
| Gene3D | 122 | 241 | 120 | 5.0E-20 | ||
| ProSiteProfiles | 138 | 168 | 31 | 6.149 | ||
| ProSiteProfiles | 169 | 203 | 35 | 9.745 | ||
| Pfam | 169 | 209 | 41 | 9.0E-10 | ||
| TIGRFAM | 171 | 204 | 34 | 2.0E-4 | ||
| ProSiteProfiles | 204 | 238 | 35 | 7.969 | ||
| PANTHER | 223 | 326 | 104 | 1.9E-102 | – | |
| Gene3D | 242 | 330 | 89 | 3.0E-18 | ||
| ProSiteProfiles | 246 | 276 | 31 | 8.002 | ||
| ProSiteProfiles | 277 | 311 | 35 | 10.961 | ||
| Pfam | 277 | 324 | 48 | 4.2E-9 | ||
| TIGRFAM | 279 | 312 | 34 | 5.1E-7 | ||
| ProSiteProfiles | 312 | 346 | 35 | 5.645 | ||
| PANTHER | 327 | 474 | 148 | 1.9E-102 | – | |
| Gene3D | 331 | 487 | 157 | 1.4E-30 | ||
| ProSiteProfiles | 347 | 377 | 31 | 7.476 | ||
| Pfam | 377 | 425 | 49 | 8.9E-10 | ||
| ProSiteProfiles | 378 | 408 | 31 | 9.186 | ||
| TIGRFAM | 380 | 414 | 35 | 1.2E-5 | ||
| ProSiteProfiles | 414 | 444 | 31 | 8.681 | ||
| ProSiteProfiles | 450 | 480 | 31 | 7.837 | ||
| Pfam | 453 | 478 | 26 | 0.0082 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0774200.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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