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LotjaGi1g1v0780100.1

Overview

Field Value
Gene ID LotjaGi1g1v0780100
Transcript ID LotjaGi1g1v0780100.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Ribose-5-phosphate isomerase A; TAIR: AT3G04790.1 Ribose 5-phosphate isomerase, type A protein; Swiss-Prot: sp|Q9S726|RPI3_ARATH Probable ribose-5-phosphate isomerase 3, chloroplastic; TrEMBL-Plants: tr|A0A151TXP4|A0A151TXP4_CAJCA Putative ribose-5-phosphate isomerase; Found in the gene: LotjaGi1g1v0780100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:135190740..135191810) extracted from Lotus japonicus Gifu genome v1.2.

TCTGTGTTTGCTGAACTTGAATTTTGTCAATGGCTTCCTTATCCCTCTCATCACCACCATCTCTCTCCTCCGCACACCAC AATGCCTCCTCCCACCTTATCCTACGCACCCCCACTTCCCTTAAACTACGCACCTCCGCCACTCCCAAACCCATCCGTGC CATCACCCTCACCCAAGACGACCTCAAGAGACTCGCCGCCGACAAGGCCGTCGACTACGTCAAGTCCGGCATGGTCCTCG GCCTCGGCACCGGCTCCACCGCCGCCTTCGTCGTCGCCAAGCTCGGCGAGCTTCTCTCCTCCGGCCAACTCACCAACATC ATCGGCGTCCCCACCTCCAAGCGCACGGAGGAGCAGGCGCGATCCCTCGGCATCCCGCTCTCCGTCCTCGACGACAATCC CCGCCTCGATCTCGCCATCGACGGCGCCGACGAGGTCGACCCTTTCCTCAACCTCGTCAAGGGTCGCGGCGGCGCTCTTC TCCGGGAGAAGATGGTCGAGGCCGCGTCTGACAAATTCGTAGTCGTCGTCGACGACACCAAACTCGTCTCCGGCCTCGGC GGCTCCGGGCTGGCGATGCCGGTGGAGGTGGTGCAGTTCTGCTGGAAGTACAATCTGACGAGGCTTCAGGAATTGTTCAA GGAAGAAGGTGTGGATGCGAAATTGAGATTGGATGAGAGTGGGAAACCCTATGTCACTGATAATTCCAACTACATCGTTG ACTTGTACTTCAAGACTCCGATTAGGGATGCAAATGCCGCCGGAGCTGAGATTTCGGCACTCGAAGGCGTGGTGGAGCAT GGATTGTTCCTCAACATGGCTACCTCAGTCATCATTGCTGCCAAGGATGGAGTTGAAGTCAAGAACAAGTGATTGTTGTT GATTCTCAAGTTAATTGAATTTCCAGTTTTCTCAACAATGGTTGGTTGGTGTCTGTGTATTATTTTTTGTTTTGAGATCC TATCATCCCCTTTGAGCGGGGAATAACAATAAAACTTGATAAATTCATTTCTCTAGTGCTTGCTTGGTTCCTCAGAATTG CAGTGTACAAAAGTCATTGCGGAATTTATAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0780100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCCTTATCCCTCTCATCACCACCATCTCTCTCCTCCGCACACCACAATGCCTCCTCCCACCTTATCCTACGCAC CCCCACTTCCCTTAAACTACGCACCTCCGCCACTCCCAAACCCATCCGTGCCATCACCCTCACCCAAGACGACCTCAAGA GACTCGCCGCCGACAAGGCCGTCGACTACGTCAAGTCCGGCATGGTCCTCGGCCTCGGCACCGGCTCCACCGCCGCCTTC GTCGTCGCCAAGCTCGGCGAGCTTCTCTCCTCCGGCCAACTCACCAACATCATCGGCGTCCCCACCTCCAAGCGCACGGA GGAGCAGGCGCGATCCCTCGGCATCCCGCTCTCCGTCCTCGACGACAATCCCCGCCTCGATCTCGCCATCGACGGCGCCG ACGAGGTCGACCCTTTCCTCAACCTCGTCAAGGGTCGCGGCGGCGCTCTTCTCCGGGAGAAGATGGTCGAGGCCGCGTCT GACAAATTCGTAGTCGTCGTCGACGACACCAAACTCGTCTCCGGCCTCGGCGGCTCCGGGCTGGCGATGCCGGTGGAGGT GGTGCAGTTCTGCTGGAAGTACAATCTGACGAGGCTTCAGGAATTGTTCAAGGAAGAAGGTGTGGATGCGAAATTGAGAT TGGATGAGAGTGGGAAACCCTATGTCACTGATAATTCCAACTACATCGTTGACTTGTACTTCAAGACTCCGATTAGGGAT GCAAATGCCGCCGGAGCTGAGATTTCGGCACTCGAAGGCGTGGTGGAGCATGGATTGTTCCTCAACATGGCTACCTCAGT CATCATTGCTGCCAAGGATGGAGTTGAAGTCAAGAACAATGTACAAAAGTCATTGCGGAATTTATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0780100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASLSLSSPPSLSSAHHNASSHLILRTPTSLKLRTSATPKPIRAITLTQDDLKRLAADKAVDYVKSGMVLGLGTGSTAAF VVAKLGELLSSGQLTNIIGVPTSKRTEEQARSLGIPLSVLDDNPRLDLAIDGADEVDPFLNLVKGRGGALLREKMVEAAS DKFVVVVDDTKLVSGLGGSGLAMPVEVVQFCWKYNLTRLQELFKEEGVDAKLRLDESGKPYVTDNSNYIVDLYFKTPIRD ANAAGAEISALEGVVEHGLFLNMATSVIIAAKDGVEVKNNVQKSLRNL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43748:SF3
4 279 276 5.0E-141 –
PANTHER
PTHR43748
4 279 276 5.0E-141 –
SUPERFAMILY
SSF100950
48 231 184 6.42E-40
IPR037171
Hamap
MF_00170
49 278 230 30.827
IPR020672
TIGRFAM
TIGR00021
52 275 224 1.3E-77
IPR004788
CDD
cd01398
52 270 219 7.30511E-102
IPR004788
Gene3D
G3DSA:3.40.50.1360
53 274 222 4.0E-79 –
Pfam
PF06026
99 274 176 1.9E-61
IPR004788
Gene3D
G3DSA:3.30.70.260
175 258 84 4.0E-79 –
SUPERFAMILY
SSF75445
181 261 81 8.5E-18 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004751
Molecular function Ribose-5-phosphate isomerase activity Catalysis of the reaction: D-ribose 5-phosphate = D-ribulose 5-phosphate.
Subterm of
GO:0009052
Biological process Pentose-phosphate shunt, non-oxidative branch The branch of the pentose-phosphate shunt which does not involve oxidation reactions. It comprises a series of sugar phosphate interconversions, starting with ribulose 5-P and producing fructose 6-P and glyceraldehyde 3-P.
Subterm of
Part of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0780100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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