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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0788000 |
| Transcript ID | LotjaGi1g1v0788000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Acidic endochitinase; TAIR: AT5G24090.1 chitinase A; Swiss-Prot: sp|P23472|CHLY_HEVBR Hevamine-A; TrEMBL-Plants: tr|G7L2X2|G7L2X2_MEDTR Class III chitinase; Found in the gene: LotjaGi1g1v0788000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136080148..136081389) extracted from Lotus japonicus Gifu genome v1.2.
ATAATGGCTTGTGTGACAGGAACTCTTATACCAATATTCTCACTTGTGATGTTGATCCTAGCAAGAGGATCAGATGCTGG AGGAATTTCCATCTACTGGGGTCAAAATGGAAATGAGGGCACCTTGGCAGAAACCTGTGCCACAGGAAACTATGAATATG TGAACCTTGCTTTTCTCTACACTTTTGGCAATGGTAGGACTCCAAGGCTAGACCTTTCTGGTCACTGTGATGCATATAGC AATGGATGCACTAAATTAAGCACTGACATAAAGTCATGCCAAGCCAAAGGCATCAAAGTAATCCTTTCAATTGGAGGAGG TGCTGGTAGCTACTCACTTGCATCCTCAGAGGATGCAAGGCAAGTTGCCACTTACCTTTGGAACAACTTCTTGGGGGGAC AATCATCTACAAGACCACTTGGAGATGCTGTTTTGGATGGCATTGATTTTGACATTGAACAAGGAACAAACCAACACTGG GATGATCTTGCAAGGTATTGAAGATCATATTTTTTCAAGTTCTCAGCTCACCTAACTTGGTGGGCTAAATAGGTTGCAAT CGAAGTGAGCTGGGCCAGCTCGTGAGCCAACTTATTTATAAAAATAAAATTAGTGAGCTTTGATTTCATTTTGAAAACCA CGTCTCGCAAAAAAATCACGTTAAACCATATGCTACAACGTGTAATTTTTGAAATAACGTGTTTTTGAGTGTGTGTCTGA TTCACATCCAAACACACACTTAGCCAACAAAAATAAAGTAAAATGGTGTTTTTAATATAATAAGTTAATAACATCAAAAT GAGTTAATTGTTTGCTATGAAACATGATTTTTGCAGGTACCTTTCAGCATACAGCAACAAAGGCAAGAAGGTTTATCTAA GTGCTGCTCCTCAGTGTCCTTTCCCAGATGCTTGGATTGGAAATGCACTCAAAACAGGTCTTTTTGACTATGTTTGGGTT CAATTCTACAACAACCCACCTTGCCAATATTCTCCTACAGATATTGCTAACCTTGAAAATGGGTGGAAGCAGTGGATTTC TGATATCCCAGCCTCAAAAATTTTCTTAGGATTACCAGCATCACCACAAGCTGCTGGAAGTGGATTCATCTCTGCGAGTG ATTTGACATCAAAAGTCCTTCCAGCTATTAAGGATAGCACAAAATATGGAGGTGTCATGTTGTGGTCCAAGTACTATGAT GATCAAACTGGATACAGTTCTTCCATCAAAAGCGACGTCTAG
CDS sequence (LotjaGi1g1v0788000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTGTGTGACAGGAACTCTTATACCAATATTCTCACTTGTGATGTTGATCCTAGCAAGAGGATCAGATGCTGGAGG AATTTCCATCTACTGGGGTCAAAATGGAAATGAGGGCACCTTGGCAGAAACCTGTGCCACAGGAAACTATGAATATGTGA ACCTTGCTTTTCTCTACACTTTTGGCAATGGTAGGACTCCAAGGCTAGACCTTTCTGGCATCAAAGTAATCCTTTCAATT GGAGGAGGTGCTGGTAGCTACTCACTTGCATCCTCAGAGGATGCAAGGCAAGTTGCCACTTACCTTTGGAACAACTTCTT GGGGGGACAATCATCTACAAGACCACTTGGAGATGCTGTTTTGGATGGCATTGATTTTGACATTGAACAAGGAACAAACC AACACTGGGATGATCTTGCAAGGTACCTTTCAGCATACAGCAACAAAGGCAAGAAGGTTTATCTAAGTGCTGCTCCTCAG TGTCCTTTCCCAGATGCTTGGATTGGAAATGCACTCAAAACAGGTCTTTTTGACTATGTTTGGGTTCAATTCTACAACAA CCCACCTTGCCAATATTCTCCTACAGATATTGCTAACCTTGAAAATGGGTGGAAGCAGTGGATTTCTGATATCCCAGCCT CAAAAATTTTCTTAGGATTACCAGCATCACCACAAGCTGCTGGAAGTGGATTCATCTCTGCGAGTGATTTGACATCAAAA GTCCTTCCAGCTATTAAGGATAGCACAAAATATGGAGGTGTCATGTTGTGGTCCAAGTACTATGATGATCAAACTGGATA CAGTTCTTCCATCAAAAGCGACGTCTAG
Protein sequence (LotjaGi1g1v0788000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MACVTGTLIPIFSLVMLILARGSDAGGISIYWGQNGNEGTLAETCATGNYEYVNLAFLYTFGNGRTPRLDLSGIKVILSI GGGAGSYSLASSEDARQVATYLWNNFLGGQSSTRPLGDAVLDGIDFDIEQGTNQHWDDLARYLSAYSNKGKKVYLSAAPQ CPFPDAWIGNALKTGLFDYVWVQFYNNPPCQYSPTDIANLENGWKQWISDIPASKIFLGLPASPQAAGSGFISASDLTSK VLPAIKDSTKYGGVMLWSKYYDDQTGYSSSIKSDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| PANTHER | 1 | 73 | 73 | 1.4E-150 | – | |
| PANTHER | 1 | 73 | 73 | 1.4E-150 | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 3 | 18 | 16 | - | – | |
| Phobius | 19 | 22 | 4 | - | – | |
| Phobius | 23 | 275 | 253 | - | – | |
| SUPERFAMILY | 24 | 272 | 249 | 9.21E-89 | ||
| Gene3D | 26 | 275 | 250 | 4.1E-89 | – | |
| CDD | 26 | 273 | 248 | 6.52808E-128 | – | |
| Pfam | 29 | 262 | 234 | 9.0E-29 | ||
| PANTHER | 72 | 275 | 204 | 1.4E-150 | – | |
| PANTHER | 72 | 275 | 204 | 1.4E-150 | – | |
| ProSitePatterns | 121 | 129 | 9 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0788000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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