Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0788100 |
| Transcript ID | LotjaGi1g1v0788100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Acidic endochitinase; TAIR: AT5G24090.1 chitinase A; Swiss-Prot: sp|P23472|CHLY_HEVBR Hevamine-A; TrEMBL-Plants: tr|A0A0D2RDX8|A0A0D2RDX8_GOSRA Uncharacterized protein; Found in the gene: LotjaGi1g1v0788100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136083400..136085194) extracted from Lotus japonicus Gifu genome v1.2.
AAAGACTAACCAGAGACAAGGGCACAAGGCAATAACCAAATTGATTTGTTTAGTCTCAGACAATCATGTGAAGCCAAAAT TAAACAATTCTACAACTGCTAACTGCTAAGGCACGCTTGTCATCAAAGTAAAACATGGCTACAGTCGAAGCAAATCCAGC TATATAAACCTCTCCAAACAACATAGTTTTCCACAGCCAACACAAGCCTCAATATCATAAGAGAGCAAGTACCACTCAAT CTAGGGCAAGAAAGAAAAATGGCACGTGTGCTAGGAACTGTGATACCAATTTTCTCACTTTTAGTGATGTTGATCCTAGC AAGAGGGTCAGATGCTGGAGGAATTTCCATCTACTGGGGTCAAAATGGGAATGAGGGCACCTTGGCAAAAACCTGTGCCA CAGGGAACTATAAATATGTGAACCTTGCTTTTCTCTCCACTTTTGGCAATGGTAGGACTCCAAGGCTAGACCTTTCTGGT CACTGTGATGCGTCTAGCAATGGATGCACCAAGTTAAGCACTGACATAAAGTCATGCCAAGCTAAAGGTATCAAAGTGAT CCTTTCAATTGGAGGAGGGGTTGGTAGCTACTCACTTGCATCCTCTGAGGATGCAAGGCAAGTTGCAACTTACCTTTGGA ACAACTTCTTAGGTGGACAATCATCTAGAAGACCACTTGGAAATGCTGTTTTGGATGGCATAGACTTTGACATTGAACAA GGAACAAACCAACACTGGGATGATCTTGCAAGGTACCTTTAAACTAGTTCTGTCAAAATGAGCTCTAGCTCGTGAGTCAA TTCAGCTCAAAACCTACTTTTTGGATGAGTTGAAAAAATTGAAGCTCATATTTTTTGAGTTTTTGTCTCGACTCACCTAA CTTGGCGGGCTAAACAGGTTGGAATCGAAGTGAGCTAGCCAGCTCGTGAGCCAACTTATTTTTTGTAAAAAAAAAATTTA GTGAGTTTTGGTTTCATTTTGAAAACCACGTCTTGCAAATAAATCATGTTAAGCCATATGCTACAACATGTAAATTTTGA AATAACTTGTTTTTGAGTGTGTGCCTGATTCACAGCCAAACACACACACACTTAGCTAACAAAAATAAAGTAAAATGGTT TTTTTAAACATCAAAATGAGTTAATTGTTTGTTTATGAAACATTAATTTTGCAGGTACCTTTCAGCATACAGCAAAAAAG GCAAGAAGGTTTATCTAAGTGCTGCTCCTCAGTGTCCTTTCCCAGATGCTTGGATTGGTAATGCCCTCAAAACAGGCCTT TTTGACTATGTTTGGGTTCAATTCTACAACAACCCACCTTGCCAATATTCTCCTAGAAATATTGCTAACCTTGAAAATGG GTGGAAGCAGTGGATTTCTCATATCCCAGCCTCAAAAATTTTCTTAGGATTACCAGCATCACCACAGGCTGCTGGAAGTG GATTCATCTCTGCTAGTGATTTGACATCAAAAGTCCTTCCAGCTATTAAGGATAGCACAAAGTATGGCGGTGTCATGTTG TGGTCCAAGTACTATGATGATCAAACAGGATACAGTTCTTCCATCAAAAGCAAAGTCTAGAATCTTAGTAGCATGTTTGG ATCAGCTTCTCTTTTATCAGAATTAATTTTGGAGCCCAAAAGCTACTTACAAGAGCTGCTACTCAGAATTGATTCTGGAT TCTATTATAGGGGGGTTTTCAAATATGTATTAAATACATATGGATATGTTGGACCTTGAGTTCATGATGTGTTTCTGTGT GTTCATATATATTAATTATGCACATTATGTTAAGT
CDS sequence (LotjaGi1g1v0788100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACGTGTGCTAGGAACTGTGATACCAATTTTCTCACTTTTAGTGATGTTGATCCTAGCAAGAGGGTCAGATGCTGG AGGAATTTCCATCTACTGGGGTCAAAATGGGAATGAGGGCACCTTGGCAAAAACCTGTGCCACAGGGAACTATAAATATG TGAACCTTGCTTTTCTCTCCACTTTTGGCAATGGTAGGACTCCAAGGCTAGACCTTTCTGGTCACTGTGATGCGTCTAGC AATGGATGCACCAAGTTAAGCACTGACATAAAGTCATGCCAAGCTAAAGGTATCAAAGTGATCCTTTCAATTGGAGGAGG GGTTGGTAGCTACTCACTTGCATCCTCTGAGGATGCAAGGCAAGTTGCAACTTACCTTTGGAACAACTTCTTAGGTGGAC AATCATCTAGAAGACCACTTGGAAATGCTGTTTTGGATGGCATAGACTTTGACATTGAACAAGGAACAAACCAACACTGG GATGATCTTGCAAGGTACCTTTCAGCATACAGCAAAAAAGGCAAGAAGGTTTATCTAAGTGCTGCTCCTCAGTGTCCTTT CCCAGATGCTTGGATTGGTAATGCCCTCAAAACAGGCCTTTTTGACTATGTTTGGGTTCAATTCTACAACAACCCACCTT GCCAATATTCTCCTAGAAATATTGCTAACCTTGAAAATGGGTGGAAGCAGTGGATTTCTCATATCCCAGCCTCAAAAATT TTCTTAGGATTACCAGCATCACCACAGGCTGCTGGAAGTGGATTCATCTCTGCTAGTGATTTGACATCAAAAGTCCTTCC AGCTATTAAGGATAGCACAAAGTATGGCGGTGTCATGTTGTGGTCCAAGTACTATGATGATCAAACAGGATACAGTTCTT CCATCAAAAGCAAAGTCTAG
Protein sequence (LotjaGi1g1v0788100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARVLGTVIPIFSLLVMLILARGSDAGGISIYWGQNGNEGTLAKTCATGNYKYVNLAFLSTFGNGRTPRLDLSGHCDASS NGCTKLSTDIKSCQAKGIKVILSIGGGVGSYSLASSEDARQVATYLWNNFLGGQSSRRPLGNAVLDGIDFDIEQGTNQHW DDLARYLSAYSKKGKKVYLSAAPQCPFPDAWIGNALKTGLFDYVWVQFYNNPPCQYSPRNIANLENGWKQWISHIPASKI FLGLPASPQAAGSGFISASDLTSKVLPAIKDSTKYGGVMLWSKYYDDQTGYSSSIKSKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 19 | 16 | - | – | |
| PANTHER | 12 | 299 | 288 | 3.4E-173 | – | |
| PANTHER | 12 | 299 | 288 | 3.4E-173 | – | |
| Phobius | 20 | 23 | 4 | - | – | |
| Phobius | 24 | 299 | 276 | - | – | |
| SUPERFAMILY | 25 | 296 | 272 | 1.35E-98 | ||
| CDD | 27 | 297 | 271 | 3.93059E-147 | – | |
| Gene3D | 27 | 299 | 273 | 3.3E-103 | – | |
| Pfam | 30 | 286 | 257 | 1.2E-32 | ||
| ProSitePatterns | 145 | 153 | 9 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0788100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…