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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0792000 |
| Transcript ID | LotjaGi1g1v0792000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclic nucleotide-gated ion channel-like protein; TAIR: AT5G53130.1 cyclic nucleotide gated channel 1; Swiss-Prot: sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1; TrEMBL-Plants: tr|A0A072U5G5|A0A072U5G5_MEDTR Cyclic nucleotide-gated ion channel-like protein; Found in the gene: LotjaGi1g1v0792000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136397103..136399274) extracted from Lotus japonicus Gifu genome v1.2.
GTGCGGTGCTGGCGTCGTGAGATGAAGAATGCTACGCTCTTTCATGAGTCCTACTTGGGCTGCAAACCACGCGATCCAGC TATCTTTCAACTTCTAAATCGTACTTGCTCATTGATTGACCCTGATCAAATCAATGAAGAAAACATCTTCAACTTTGGAA TATATTTCGGAGCTCTACAATCACGTGTGATAGATTCAACAACTGATTTTCCTCCGAAGTTCTTCTACTGCTTTTGGTGG GGTTTGCGGAATTTAAGGTTAGTGAAAAATCACGTGTGCTCTTGTCTTCATATTATAATGCAACATGCACGTTTTATGAA CTATAGAACTTTATATCCTTCTCAAAGAAAATTTTCAATGGAAGTTATTATTTTCTGTGATATTTTCTCAAAGAAAAAGT AGAGAAATATATTAAAACATGAGACTGACTAAAAGAATGGCAGAATTGAAAAAAAAAATTTGTTGTTTTTTGCAGTTCTC TTGGACAAGACCTCAAGACAAGTACTTATGTCCCAGAGATAATCTTTGCAATCTTCATTGCCATCTTTGGATTGGTCTTA TTCTCATTACTTATTGGGAACATGCAGGTAACTCTTGGTCTGGACTTGACCAGAGAATTTTGGGTTGAAAACCAGCTACG TCAGACTTATTTTATTTATTAATGAGCTCATTGATTGTGAATTTGTAATGAACATTGTTGCAGGAATATCTGCAATCTAC TACTGTTAGAGTGGAAGAGATGAGAGTGAAGAGACAGGACGCAGAACGGTGGATGTCTCACCGTATGCTACCTGAGAACT TGAAGGGAAGAATTAGAAGTTATGAACAGTACAAATGGCAAGAGAATAGGGGTGTGGAGGAGGAGACATTAATTCGTGAC CTCCCAAAAGATCTCCGAAGGGACATAAAGCGCCATCTTTGCTTAGCTTTGGTTAAAAAAGTATGTATCATTCATAAACT GTCATTATTCTGCATCTAATTATTCTTTATACAACTATGCTATATGGGTAATGACACTTAGACACTCAAATTGTAGATAC ACGTCATTCGAGTGTCTGCACTGCGCGGATGTATACCAATCATTTTCCTTACTATATTGTACACGTGTAATGAACATTTT ATGTTCTATTTGCTTTAGGTTCCACTGTTTGAAAAAATGGATGAGCAGTTGTTGGATGCAATGTGCGATAGACTGAAGCC AGTCCTTTTTACAGAGAAGAGTTGCATTGTTCGCGAGGAAGATCCAGTTGATGAGATGCTATTCATAATGCGCGGAAAAG TTTCTACTATGACAACAAATGGCGGCAGAACTGGTTTCTTTAACTCCTTAGATCTAGTAGCTGGTGACTTCTGTGGAGAG GAGCTTCTAACATGGGCTTTGGATCCTAATTCCTCCTCAAATCTACCAACTTCAACAAGAACAGTCCAAACAATTTCAGA AGTCGAAGCCTTTGCTCTCATGGCTGATGACTTGAAGTTTGTTGCTTCCCAATTTCGACGTCTATTTAACAGCAAACAGC TCCAGCACACTTTCAGGTAAGGCTTGATATTTTTGTTGTACTTTTTTCCACTGAAGTTCACCATAAAACACTAATCACTA CAATTTGTGCATCAATACCGCACCAGATAGTAGGTAAAATTTGCAGATATTGTTCAAAAATCAAAATCATCAATGTTTAG GTTCATACTTTTGAGAATACTACGATTATATAGTTGGGTACTCCACATGACATTGTCGAGATTTTGTGTTTGTCGCACTC TCTCTCTTCATATGTATTAAATAGTTGAGATCCTCTTAATATTTATGAAGACAATTGTCTCTGTGTTTTCCTTAATCCTT CCTAACTTTATTCAACAATATGTTTTTCCAGGTTCTATTCCCCACAATGGAAAACTTGGGCTACATGTTTCATACAAGCA GCTTGGCGTAGATATTGTAAAAAGAAAATTGAGAGGACATTGCGTGAAGAAGAAGACAAACTAAAAGGTGTTCTTGCAAT TGAGAATGGATCCACTCTAAGCCTTGGTGCAACCATATATGCATCAAAGTTTGCTGCAAAGGCATTACGAAACTTGAGAG AAAATAGCAGACAAAGCAGAACGCCACAGAGACTGCTACCTCTGTTACCTCCAAAGCCAGCTGAGCCAGATTTCACTGCT CAGAAACACTAG
CDS sequence (LotjaGi1g1v0792000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAATGCTACGCTCTTTCATGAGTCCTACTTGGGCTGCAAACCACGCGATCCAGCTATCTTTCAACTTCTAAATCG TACTTGCTCATTGATTGACCCTGATCAAATCAATGAAGAAAACATCTTCAACTTTGGAATATATTTCGGAGCTCTACAAT CACGTGTGATAGATTCAACAACTGATTTTCCTCCGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGGAATTTAAGTTCT CTTGGACAAGACCTCAAGACAAGTACTTATGTCCCAGAGATAATCTTTGCAATCTTCATTGCCATCTTTGGATTGGTCTT ATTCTCATTACTTATTGGGAACATGCAGGAATATCTGCAATCTACTACTGTTAGAGTGGAAGAGATGAGAGTGAAGAGAC AGGACGCAGAACGGTGGATGTCTCACCGTATGCTACCTGAGAACTTGAAGGGAAGAATTAGAAGTTATGAACAGTACAAA TGGCAAGAGAATAGGGGTGTGGAGGAGGAGACATTAATTCGTGACCTCCCAAAAGATCTCCGAAGGGACATAAAGCGCCA TCTTTGCTTAGCTTTGGTTAAAAAAGTTCCACTGTTTGAAAAAATGGATGAGCAGTTGTTGGATGCAATGTGCGATAGAC TGAAGCCAGTCCTTTTTACAGAGAAGAGTTGCATTGTTCGCGAGGAAGATCCAGTTGATGAGATGCTATTCATAATGCGC GGAAAAGTTTCTACTATGACAACAAATGGCGGCAGAACTGGTTTCTTTAACTCCTTAGATCTAGTAGCTGGTGACTTCTG TGGAGAGGAGCTTCTAACATGGGCTTTGGATCCTAATTCCTCCTCAAATCTACCAACTTCAACAAGAACAGTCCAAACAA TTTCAGAAGTCGAAGCCTTTGCTCTCATGGCTGATGACTTGAAGTTTGTTGCTTCCCAATTTCGACGTCTATTTAACAGC AAACAGCTCCAGCACACTTTCAGGTTCTATTCCCCACAATGGAAAACTTGGGCTACATGTTTCATACAAGCAGCTTGGCG TAGATATTGTAAAAAGAAAATTGAGAGGACATTGCGTGAAGAAGAAGACAAACTAAAAGGTGTTCTTGCAATTGAGAATG GATCCACTCTAAGCCTTGGTGCAACCATATATGCATCAAAGTTTGCTGCAAAGGCATTACGAAACTTGAGAGAAAATAGC AGACAAAGCAGAACGCCACAGAGACTGCTACCTCTGTTACCTCCAAAGCCAGCTGAGCCAGATTTCACTGCTCAGAAACA CTAG
Protein sequence (LotjaGi1g1v0792000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKNATLFHESYLGCKPRDPAIFQLLNRTCSLIDPDQINEENIFNFGIYFGALQSRVIDSTTDFPPKFFYCFWWGLRNLSS LGQDLKTSTYVPEIIFAIFIAIFGLVLFSLLIGNMQEYLQSTTVRVEEMRVKRQDAERWMSHRMLPENLKGRIRSYEQYK WQENRGVEEETLIRDLPKDLRRDIKRHLCLALVKKVPLFEKMDEQLLDAMCDRLKPVLFTEKSCIVREEDPVDEMLFIMR GKVSTMTTNGGRTGFFNSLDLVAGDFCGEELLTWALDPNSSSNLPTSTRTVQTISEVEAFALMADDLKFVASQFRRLFNS KQLQHTFRFYSPQWKTWATCFIQAAWRRYCKKKIERTLREEEDKLKGVLAIENGSTLSLGATIYASKFAAKALRNLRENS RQSRTPQRLLPLLPPKPAEPDFTAQKH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 425 | 425 | 2.3E-255 | – | |
| Phobius | 1 | 93 | 93 | - | – | |
| PANTHER | 1 | 425 | 425 | 2.3E-255 | – | |
| Pfam | 59 | 126 | 68 | 8.6E-12 | ||
| SUPERFAMILY | 64 | 120 | 57 | 3.53E-11 | – | |
| TMHMM | 90 | 112 | 23 | - | – | |
| Phobius | 94 | 112 | 19 | - | – | |
| Phobius | 113 | 427 | 315 | - | – | |
| Gene3D | 122 | 189 | 68 | 7.2E-15 | – | |
| SUPERFAMILY | 127 | 317 | 191 | 6.04E-34 | ||
| Gene3D | 196 | 316 | 121 | 3.5E-42 | ||
| ProSiteProfiles | 198 | 282 | 85 | 11.825 | ||
| CDD | 198 | 330 | 133 | 1.63848E-15 | ||
| SMART | 198 | 329 | 132 | 5.8E-11 | ||
| Coils | 351 | 371 | 21 | - | – | |
| MobiDBLite | 397 | 427 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0792000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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