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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0794800 |
| Transcript ID | LotjaGi1g1v0794800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Arginine/serine-rich splicing factor, putative; TAIR: AT3G61860.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|P92964|SRS31_ARATH Serine/arginine-rich splicing factor RS31; TrEMBL-Plants: tr|A0A151TY13|A0A151TY13_CAJCA Arginine/serine-rich-splicing factor RSP31; Found in the gene: LotjaGi1g1v0794800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136580780..136583340) extracted from Lotus japonicus Gifu genome v1.2.
TTAATAAGAATTGAATGAATACTAAACTCACACCCTAGAATAACATAACAGCCCTAGAAAATGAATGTATAATCCAACGG TGTCAAAATTGTCATATAAAATGGAAAAATAGGGCTATTTGTTTGGGGAGTGACCACAACCAGCGAGCATTTGCAATTGT CTGTGACTGTGTCTAACCCTCAAAGTTGTTTGGGTAGCGCATTTCTGTGTTAATCGTCTGATCTTTGATTTTGGTTTTTT GAAGATGAAGCCGGTTTTCGTTGGAAACTTTGAGTACGAAACCCGTCAGTCAGAGCTCGAACGCTTGTTCGCCAAGTATG GTAGGATTGAGCGCGTTGACATGAAATCTGGTAAGCTTAACTCTTTCTTCTTATTTTTTCGTTAGGGTTTAGGGTTATGT AAACTGAAACTGAATCTAATTATCCTGATAAAAAAAAAGTGTATGTATTGATTTCACTTATACTAACGGAAATTATGCTT TGCTGTGGCTCTATTTTGTTTTTTTGGAAGGAAACCTTCCCGCTTCTGTGCTTGTTCGTTCTCCCTTCCACCCTCAGATA GCATCATCATCATCATCTACATTTTCTCACCTGAACATCTGTTACTCACTCACTTCATGGCATGCCCTTTTCCATCAGAA TGCTCATAGTGGAATCATCAATCAAATTAATAAACCATGCTTAGAGGATCAGTGAAATTCTGTCATGCCATGCCTAATGC CTTGTATTACTCAAACCACTCCTGCTGTCTGAATGGAGAAGCATGCTTGGCTATGGCATTCACAATCTCAGATCTCAATT TTGGATTAAAACCCTTAAATTGCAATCATCGTTTTCTTCCTCATTCAACGCCTCTAAAGCTTCATGTGCATCAGCCCTCA CATATAATGCAGGTGTTGTATTCCTTTGTTCCTGACTGGGAAAGTGATTACCTGATTTGGATGATGTACTGCCTGCCGGG GGTAAGATTTCGACTTTCATCATTATATATGTTTCTAATGCTAATTTTGTTAGTGCAGGTTTTGCATTTGTTTATTTTGA GGAAGAGCGAGATGCTGAGGATGCAATTCGTGCACTTGACAATTTTCCATTTGGATATGAAAAGCGAAGGCTTTCAGTGG AGTGGGCTAGGGTATGATAGTATTTTATTCTGATGTTTTAGTCGTATTTTCATTGCATTATTTAGTCGCAGATGTAACTA ATGCACTATCTGCGTTTTATAACTGGATTATGTTTGTTTAACTTTAACAGGGTGAACGTGGCCGTGGTCGAGATGGCCCA AGGACAAACCAGAAGCCTACAAAGACCTTATTTGTGATTAATTTTGACCCAATTCGTACTAGAGTCCAAGATATCGAAAG ACACTTCGAGCCTTATGGGAAGGTTGTTCATGTTCGAATTCGTAGGAACTTTGCATTTGTGCAATTTGAAACACAAGAAG ATGCTACTAAAGCTCTCGAGTGTACTCATATGAGGTTAGTGATGAGATTTGATCTCTATTATTAAAATTCTTAGGTTGCT TATTTTACCCACTCTGTACAAATAATATATTTCTGGTTCCATTGCACTTGCAGTAAGGTACTGGACAGAGTGGTCTCTGT GGAGTATTCTCTCAGGGATGATGATGAGAAGGGTGACAGATATAACAGTCCTAGAAGAGGAGGGGGTTATGGAAGATCGC GCAGTCCAGTTTATCGTAGGCGATCTAGCCCTGACTATGGACGTCCACGCAGCCCTGTGTATGACAGGTACAATGGACCG GGCTATGACAAACGCAGGAGCCCTGATTATGGTAGGCCTAGGAGCCCTGATCTTGGCAGGCACAGGAGTCCTGAATATGG TAGATATCGCAGGTATTGTGATCAGTAGTCATTATAGTAACATGTATATGCACTTGCTGTTTTCTGTATTTGGAGCTTAT CTTGTGTTCTTTATCTACAGTCGCTCACCGATCCGGAGGCCATGAACTTAAAAGCAATGCTTGGTTTTAGGGTGTGAAGC AGGTTGCATTGGCATCATGTTGCTTTTTGGGATATGGAATGATTTCTATTCACATTTTAATTATTGTTTTCTTTCTAGCT CTGAAGTTGGATGTTTAATGTCAGAATCGTTAGTATCTGTGGACTATGGTATAGACATTATGTCTTGATATGGTTAGATT TTATTTTTCTGACTCTACTACTATTCTGAAAGTGAAGTGATTGAATTTTGGTCATGCGAGTAACCATAACCAAAGATTTG TAGTTTTGAAGGTTAAATATTAATGTACAAAAGGTTATGATCTTTGGCTATGTTTTGAAGTACGAATTTATTTCATTTGA AAAATTAGTCGTACTTCAATGGGCGGATGTTATTTCACATTTTTATTGATTTTGGTCTTTGACTGAGGTGTCCCACAACT CGTAGTCATGAGGATAATCTTTTGTTTTGTGGTCAACATACTAGTAGGAGGTTGGCCAATGATTTTTTTTCGGGTAGAGA TTTGAACTTTCAACCACTTGCTTAGTTTGATTCACTTGGTCACATTTTTTTTATTAAACTCAGCATAAATAAATATTCAA C
CDS sequence (LotjaGi1g1v0794800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGGCTATGGCATTCACAATCTCAGATCTCAATTTTGGATTAAAACCCTTAAATTGCAATCATCGTTTTCTTCCTC ATTCAACGCCTCTAAAGCTTCATGTGCATCAGCCCTCACATATAATGCAGGTTTTGCATTTGTTTATTTTGAGGAAGAGC GAGATGCTGAGGATGCAATTCGTGCACTTGACAATTTTCCATTTGGATATGAAAAGCGAAGGCTTTCAGTGGAGTGGGCT AGGGGTGAACGTGGCCGTGGTCGAGATGGCCCAAGGACAAACCAGAAGCCTACAAAGACCTTATTTGTGATTAATTTTGA CCCAATTCGTACTAGAGTCCAAGATATCGAAAGACACTTCGAGCCTTATGGGAAGGTTGTTCATGTTCGAATTCGTAGGA ACTTTGCATTTGTGCAATTTGAAACACAAGAAGATGCTACTAAAGCTCTCGAGTGTACTCATATGAGTAAGGTACTGGAC AGAGTGGTCTCTGTGGAGTATTCTCTCAGGGATGATGATGAGAAGGGTGACAGATATAACAGTCCTAGAAGAGGAGGGGG TTATGGAAGATCGCGCAGTCCAGTTTATCGTAGGCGATCTAGCCCTGACTATGGACGTCCACGCAGCCCTGTGTATGACA GGTACAATGGACCGGGCTATGACAAACGCAGGAGCCCTGATTATGGTAGGCCTAGGAGCCCTGATCTTGGCAGGCACAGG AGTCCTGAATATGGTAGATATCGCAGTCGCTCACCGATCCGGAGGCCATGA
Protein sequence (LotjaGi1g1v0794800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGYGIHNLRSQFWIKTLKLQSSFSSSFNASKASCASALTYNAGFAFVYFEEERDAEDAIRALDNFPFGYEKRRLSVEWA RGERGRGRDGPRTNQKPTKTLFVINFDPIRTRVQDIERHFEPYGKVVHVRIRRNFAFVQFETQEDATKALECTHMSKVLD RVVSVEYSLRDDDEKGDRYNSPRRGGGYGRSRSPVYRRRSSPDYGRPRSPVYDRYNGPGYDKRRSPDYGRPRSPDLGRHR SPEYGRYRSRSPIRRP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 11 | 82 | 72 | 9.507 | ||
| Gene3D | 30 | 93 | 64 | 6.2E-9 | ||
| PANTHER | 31 | 233 | 203 | 1.7E-94 | ||
| PANTHER | 31 | 233 | 203 | 1.7E-94 | – | |
| SUPERFAMILY | 42 | 173 | 132 | 1.08E-24 | ||
| Pfam | 42 | 69 | 28 | 2.5E-5 | ||
| Gene3D | 94 | 181 | 88 | 1.2E-19 | ||
| ProSiteProfiles | 99 | 170 | 72 | 14.999 | ||
| SMART | 100 | 166 | 67 | 2.0E-17 | ||
| CDD | 100 | 169 | 70 | 2.33117E-40 | – | |
| Pfam | 101 | 163 | 63 | 1.3E-12 | ||
| MobiDBLite | 171 | 256 | 86 | - | – | |
| MobiDBLite | 217 | 250 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Cellular component | Spliceosomal complex | Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA. |
Expression pattern of LotjaGi1g1v0794800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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