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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0795400 |
| Transcript ID | LotjaGi1g1v0795400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytochrome b5; TAIR: AT5G48810.1 cytochrome B5 isoform D; Swiss-Prot: sp|P49098|CYB5_TOBAC Cytochrome b5; TrEMBL-Plants: tr|C6TFJ7|C6TFJ7_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0795400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136622065..136624362) extracted from Lotus japonicus Gifu genome v1.2.
GTACTTTCAAGTTAATGGGCAAAATCCATAAAAGTGTCTGTGCGCCATCTCCTATATCTATCTGTAAGAATTTTTCATCA AGTTGTGCGATTTTTTTTCCTAGGTATTCGGGACTAATCTGGGAATGTTATGGGCTTTCTGCATTGTACTTTCTTTTTAG TTTTTCTTAATGATCTGGGACTGGACTTTGTGTGACAGAGGCAGCAATGGCTACAAATTCCAAAACCTTTACTTTTGAGG AGGTGGCCAAACACAACAACAAAAAGGATTGTTGGATTATTATCAGTGGAAAGGTCTGATTGTTTTTCTTACTCTTTTTA TTTTCTTTTGGCTTACTCCTGTAGCTTCTGTATCTGTTTTATTTCATTTTTGGGATGAATAATAATAACAGGAATAATAT GATGCATGCTAAATGCTTATTCAATTGCATGTGTGAGAAGGGTTAGATGTTATCCCTGGTAGCTCCAAATATACCCTGGT CTTGAAAGCCTTTTCTTACAGTAATATGATTTGAATGCTACACCTTTGTCTACTTGTTATGCTTGATTGATACATAGAAA TCAGCAGACACAATAATTGAAATTCAGACATACTTAACAATTAACATAGATTTACCTATTGGTGAAATTTTCCTTTTCTT AGTGGAATAACAAAAGAGGTGATTAGTGATTACTGAATTATGCAGTCTATGGTGAATGAGGCTTGTAGTATCATTATTCA TTATATGTAAGAATTATGTATTGTAACAGCACATACACAACGCATCCCAATCCACCAATGTGATATGAGATAATGAAATA TTTTAAAGATATGACTCAGATATGATTTGTTATGAACTATGATCAGTTTCGCTGTAGATTGTTTTACTTCAAAACTTTGA ATAATATCATCTTACCTAATGACTTGTTACTTGTTATTTGTTAGTAATGACTAATGAATAATCCTATTTCATGTCAATTC TACATAGAGCTAGTGCAGCATTCCTGGAAATATTTATGGCTCCATCATCAACCACCACTTTATCATCTTCAAGCACTTGG AATTCTCAATCTTTTCAAAATACCTCTAACCCTACATATGTAACACATCACCCTTCTCTTGCTGTTTTTTTAGCATTGAA AACCAAGTTGGCTGAAACTCTTGATATGAATAATTGCATTCTCTGGGGATCCTTGTTGGTTGGTTCCTGTCCATAAAGCC TACAATGTCTTCAATTATATCCAAGTCACTGTCACATTACCTCTTGCAACTATTTTTCATTATACAGGGTTGTGCTCATG CATTCTTGAAACGCATTAGAGAAAGAATTTTCTAACTCTGAGTTGGTTAGCCAATAAAATGATGCTGATAATTTTGATTA CCCCTTATTAAGGTCACTGTCTGACTATAGGATGTAATGGTCTGAGTAAACTGCAGCATCTATAATATGGAATGAGAAAT CCTTACCACTGTTTCTAGATGTGAAAAATATGTTAAAGCTTCAGATTGAATTTTAGCACTAACAACATTCTATATTGCAT TCCCTCTACCTAGAAGTTTCTCATCAAAATTGATTTTAACCTTAGCAGAAGTATTTCCAAACATTAATAACACTTCAAAC TGTTACGACTAGTTTGTCCATCAAGTTATCATACTTAACATTACATTGTTTATACCCAAGTAGGTGTATGATGTCACACC ATTTTTGGATGATCATCCTGGAGGTGATGAATCTTTAATATCGGCAACAGGTAATCAATTTCTCCCTGTTGGTTTATTCA TATTAGTAATCTGCTAGCAAAAAGCCCTGGGGAAGAGTGAATTGATAATCTTAACCCTGGGTTCTTTTACAGGGAAGGAT GCAACCATTGACTTTGAAGATGTCGGCCACAGTGACTCTGCCGTAAAAATGATGAAGAAATACCTTGTTGGGGAAGTTGA AACCTCCACTTTACCATCCAAAGTCAACCACAGTCCACCACAACCTGCACAAGCACATGGTGTTAGCAATCAATCTTCAG GATTTGTTGTGAAGACATTGCAATTGCTGTTGCCATTGTTGATATTGGGCATTGCATTTGCTCTGCAGTACAAGAAGAAA CAAGTCAGCGACTCATGAATTTTGAACTTGAGCTAGTGTCTTTGTTTCCCAAGTTTTTTTATTCATAACATATATCAAAC GCAACCTACGTTTGGCTTAGTTGTGCTAGTTGTTCATTTAGACTCAATTGAAAATTTGAAATGGATTTAACATTTTGATG ACTCAGTATTCTTTTCTTTTATATTTGAATATTTTTATATGGATTGTCTTAATTTGTG
CDS sequence (LotjaGi1g1v0795400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACAAATTCCAAAACCTTTACTTTTGAGGAGGTGGCCAAACACAACAACAAAAAGGATTGTTGGATTATTATCAG TGGAAAGGTGTATGATGTCACACCATTTTTGGATGATCATCCTGGAGGTGATGAATCTTTAATATCGGCAACAGGGAAGG ATGCAACCATTGACTTTGAAGATGTCGGCCACAGTGACTCTGCCGTAAAAATGATGAAGAAATACCTTGTTGGGGAAGTT GAAACCTCCACTTTACCATCCAAAGTCAACCACAGTCCACCACAACCTGCACAAGCACATGGTGTTAGCAATCAATCTTC AGGATTTGTTGTGAAGACATTGCAATTGCTGTTGCCATTGTTGATATTGGGCATTGCATTTGCTCTGCAGTACAAGAAGA AACAAGTCAGCGACTCATGA
Protein sequence (LotjaGi1g1v0795400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATNSKTFTFEEVAKHNNKKDCWIIISGKVYDVTPFLDDHPGGDESLISATGKDATIDFEDVGHSDSAVKMMKKYLVGEV ETSTLPSKVNHSPPQPAQAHGVSNQSSGFVVKTLQLLLPLLILGIAFALQYKKKQVSDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 138 | 138 | 7.7E-74 | – | |
| Phobius | 1 | 108 | 108 | - | – | |
| PANTHER | 1 | 138 | 138 | 7.7E-74 | – | |
| Gene3D | 2 | 92 | 91 | 2.6E-35 | ||
| ProSiteProfiles | 5 | 81 | 77 | 29.121 | ||
| SUPERFAMILY | 5 | 87 | 83 | 1.44E-34 | ||
| SMART | 8 | 81 | 74 | 1.4E-34 | ||
| Pfam | 9 | 80 | 72 | 1.9E-26 | ||
| PRINTS | 30 | 40 | 11 | 5.0E-14 | ||
| ProSitePatterns | 36 | 43 | 8 | - | ||
| PRINTS | 40 | 54 | 15 | 5.0E-14 | ||
| PRINTS | 55 | 62 | 8 | 5.0E-14 | ||
| PRINTS | 68 | 80 | 13 | 5.0E-14 | ||
| TMHMM | 108 | 130 | 23 | - | – | |
| Phobius | 109 | 129 | 21 | - | – | |
| Phobius | 130 | 139 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. |
Expression pattern of LotjaGi1g1v0795400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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