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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0801200 |
| Transcript ID | LotjaGi1g1v0801200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT5G50850.1 Transketolase family protein; Swiss-Prot: sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; TrEMBL-Plants: tr|I1JJD2|I1JJD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0801200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:137169065..137174947) extracted from Lotus japonicus Gifu genome v1.2.
AGAGTGAGAGAGGGAGATGAAGATTACTTTTGCTAGGGAGATCGAGGTAAGTCGTTGCGAGGTTATGAGTTCATGCATGA GTCATTAACATAACGACAAATAATGAGTTGTGTAAATGAGTGAGTCTCACAGTGCAAAATCAAATAGAAAACCAAATTGG AAGTGAGTCATTATCATTATGAGCAATGCAAACAAAATTTAGAATGTGAGAATATATTTCTAGGGATTAAAAATAAAAAA AATATTTTCAAGGATTAAAACCAGCATTTTCTATATCTCTAAGGGCCCGAAACATATTTAAGCCGATAATTATTGACCAA AGGAGAGAATAGAAGAGAAGAAGAGCATGGTTCTAATTTAATCTGGAGAAGGGTAGGTTGTTGGATTGGGTCTTTGTGAG TAGCGATTGGAATCGGATCCATCCAGGTCTATATTTCTTGCTTTCAATTGGTGATCGGAATCGGATCCATCTTGTAGTGT AGAGGTGAGGCACAGCCGTTCTTCCTGATCTATATTTCTTGCTTTCAATTCACATACATATTTTCTTAGGGTTTCTTACT TGTTATTATCTAGGTTTTTATCTCTGGTTCAGTGGTTCTTATGCTTGAGTTCGAGTTTCAATAAAGATATTTGTTGACGC ATTTCAGTTTTTTCGGGAGTAGATTTGCTTCGTTCAAAAAAGTTGAAGATGTGGGGTGTTACAAGGCTCAAGGTACGATT GGTTGTTATCTCATTCATATTATGTGTGCTTCCATTTCACGTAATCGCTTCTATTCGCAGACTATCCGCCCTGCTTTCTC TTCACTCAGACAATTCTCTTCCGTCGCCAAAGAGGTTTTGCTGCTTTCTTCCATCCTTTTCTCATCAAACTCACCCCATT CTCTTTTCAAAATTTGGTTCACTCGTTTCCATTTTGTCAGATGACAGTGAGAGAGGCTCTCAACTCCGCACTTGATGAGG AAATGTCAGCAGATCCTAAAGTCTTCTTGATGGGTGAAGAGGTCATTCAATTGTCCCATTTATATAACACTGATTTTTTT AACCAAAAAAATGTCTACTTCTTACTTCATTTTTTGGTGTATTAAAGTGCAGGTTGGAGAATATCAGGGTGCATACAAGG TTAGTTCTGGGTTTCCAGTTGTTGGTGCTATTTCTTTGCTAGCTGTGAATTTCAAAATTTGATTTACTATTATCTGTTAA TCTGCTTTCGTCTTTCATTGTAGATAACCAAGGGTCTGTTGGAGAAGTATGGCCCTGAGAGGGTTCTTGATACTCCAATC ACTGAGGTTCTTTTTCTTACCTCACCCCACGCACAATTTTTTTTTTCCCACAAAGAACTTCATGATATTGTGTTTTCAAT TAAAACTGCTAGAATTAGTGTTAGATGTATAGGGTAAACCATTCACATGTCATCCAATAAAATAAACAAATTGAATTTTT TAATAATGTGGTGGCATGGATATGCATTCCTTGGATATAAGCATAGGCTGTTATGTTAGGCTTCCTTCTTCATGTTGATC TGCTTTTAACTTTCTGCAATGGATTTCTTATTGAATGTGAAAATTAACTTTTCCTGCCTCTTAACTCAACTTAAATTGAT ACTTCAATAGTGTTTGATTACATTTTCAACATCGTGTGTGGTGTTTTACATACTTTAAATTTACACTAATAGATAAACTA TTTTAACTGATAATTCCTCGAAAAAAGAACAGGATTTATAGTTGGTAGCTGCGGTTTGCTTGGGGTTATTTATTTGCTTA AATATACTGCAGGCTGGGTTTACTGGGATTGGAGTAGGCGCTGCTTACTATGGTCTAAGACCTGTCGTGGAGTTTATGAC ATTTAACTTCTCCATGCAGGTTAGAGTTGATCTTGATTGCATTCTTTCTTCCTTAAACTGAATATGCAGTTATGTGGTTT AATTTACTTTTTTAACCACTGCTCAAGTAATGTAATGTTATGTCTTGTAAAGTTGGCTGTGCTTGAAGATCATTAGATGG AAATGGCATCTTATCTTATGAGTGCTATCTTCTTTCTGATAAAAGCACTAAGGTTATGAAGCTACCAGCAAATGATTCTT AATTCCACAAGGATAGATGTTGATTCCCTGTCTGTTGATTGACGTATACCATGTTTTCTATCATGGAGTGGTCAACCCCG GAGTTGCTATAATGGCAAACACTATGGGTCACTTTGTTTTAGAGTTAAGTAAAAGTAAATTTGATAAAAGTAAGTTTAAT GAAAGTAAGTGTAATATAATGAAGTTTAAAAAAATGAATTTGTGTTTGGAAATGAAGTATAAAAGTAAGTTTAAAAAAAG GAATGTTGGAACTCATTGGTCCCTTGAACATTGAAATACTAAGATTGTGAAGAATTTTGTGTCAACATGTGTGATGACAT TTAGTTTTGGGTTTCATTTGTTTGGTAAACAGCTGCATCATCTTGTCTTATTAACTTCCCCATCTATTTTATCCCACTTA TTGTCTTATTTTATATTAACTTGTTTTGCAGGCAATAGATCACATTATTAATTCTGCTGCAAAATCAAACTACATGTCTG CTGGGCAAATAAATGTACCTATTGTCTTTAGAGGACCCAATGGTGCTGCTGCTGGGGTTGGTGCTCAACACTCTCAGGTA TGGTTGTCCAAACTTTCTTCCTATGTGTGAACACTTTCTTGAGCTATTTGTTTGCATTTCCCTTTGAATCTTACTTCAGT TATGACCTATTGTGCACAGATAGTTTAGGTTTTCTCTCTTTGTGTGACTCAACTATGCTTTTATGCAGTGTTATGCATCT TGGTATGGCTCTTGCCCTGGGTTGAAAGTGCTATCACCATACTCATCTGAAGATGCTCGTGGTTTGCTTAAAGCAGCTAT AAGGGACCCTGATCCTGTAGTTTTCCTTGAAAATGAGTTGTTGTAAGTTGTGCTGCTTGATTAGTACGTAAAATGAGCAG TAAAAATTTCAAACATAATTTATTTGTTATAAAAAGTATTGTATTTGATGAGGTATGTCTTCTAGATATGGCGAGTCTTT CCCAGTTTCGGCCGAAGTTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAGGTAATTAATTATCTGTAATATG AAATACGCCGTGCTTATGGTTGTTAGAGTCACACTGGTTATGCATTAATGCTTTCTAATTGTATCCTTGTTTTTTTTTTT TTTGAAATATATTCTTATTGTATCCTTGTTTGCTTCATGAATTTATCTCTTGACAGATTGAGAGAGAAGGAAAAGATGTT ACTATTACAGCCTTTTCAAAAATGGTTGGTTATGCTCTCAAGGTTTGTTTCACCCCAAGTTACTTCTGTAAACTAGATAT GTATTGTTTGCTTTCAATTTATCTTTTGCTGTGACGTATTTGAAATAGATCTAGGTTTGTATTGCATTTAAATTTAAATA TTAAACAGTGTTATTAATGGCGTATGGCGGTCCATGGCGTAAAGCCAAAGAAACGCCATAAAAATCTTCATACAACTGCC TATAAAACAGGCAGAATAATAAATAATAATAATAATAAACTAGTATTTTTTCCCTTTGTACTTTTTGCACAATAAATGCA TTCAAAATCATTAGTATTATCTTCTTTCAAATGATGGCTGTATTTCCACCCTGGGTCAGTTTTGTTATTCCTTGAAGAAG CTTGTGATGAAGCTCTATACTTGCCATGTTAAGGAGAGAAATAAAAACTGGGTCTAAACTCAGGAAGAAAAAGGTAACGG GTCAAGGGAAATAAAACAGTAAGAAAAATAGAGGCTCGGCGGAGCGTGCTGGAGATTATCCGCCCGACTAGTCACCGGTG AGGGAGTGAGCTTGATGGGGAGGAATGAGGCGTTGGAGAGGCAGAAAGCACGCCTTTGAAGTTTGAATGAGAAAGAAGAA GAATAGAAGCTGGGCTGCTTCTTAAGTTAGGGTTTTTAAGTGGTTTGTATGGGCTTTTCATGGCGGTCTGATGTAAAACT GCCACGGCGACACCATGGCCTCCATTTTAAAACACTGATAATAATAAATAATAAGAAAAGAAACCAAAGTAATAGTAACA AAACGATAGTAAGAGACACGGGGACAGTAATTTTTTTGGAGTATTTTATTATTTTCAAATTTCTAAGGACAGATCAGAAT TTGTGTCCTCCTAAAGAAGATAACATTTATTAATGAAACATTTACAAATAACTATTTTTCTTGGTGTTTAGGCTGCTGAG ATACTAGCAAAGGAAGGAATCAGTGCCGAGGTAGGCCTTGCAATAGTTAATGATGAATTTCCCTCCTGTATGCAAAACGT CATTTCAGTATGATAATGGTGAGTGATTTTATCATATAGGTTATCAATTTGCGTTCGATCCGGCCGCTTGATCGATCCAC AATCAATACTTCTGTCAGGAAAACCAACAGACTGGTGACAGTTGAGGAGGGTTTTCCTCAGCATGGTGTTGGTGCTGAAA TCTGGTTTATCTCTTTACATTGACCTTTTTGTTTCTTTTTGGTTAACTCTTGGAAATTATGTAAAGTTAACTCTTTTCTT GAGCAGCACATCTGTCATTGAAGAGAGTTTTGGTTATCTTGATGCACCGGTTGAGAGAATTGCTGGGGCTGATGTTCCCA TGCCTTATGCAGCAAATCTGGAGAGGATGGCTGTTCCACAGGTAATGCTTCTTTAATATTGCTTTATTTTCTAACCCAAT TTGAAAGACCTGTTATTTTAATCTGCAAATTGATAAAAGAATATCTGTTTTGAATGAGTGTATTAAAGCCCTGAGATGAC GGCTTTGTAAGAATTGAGTTTTGTATCTGATGAAAAATCAGATTCCAAGCTGTTGAAGGTTTTAATACATTTTTATACTT TATAGATCATTTAAATCTGGCTGCTTACTCGTATATGTGGATGTACAGGTTGAAGATATTGTTCGTGCTGCAAAAAGAGC ATGCTACAGATCTGTGCCTTTGGCCGCAGCTGCTTGAATATCAATCTAGTCCTTAATTTTAATGTCAGGTTAGTTCTTTG GTAATCCTAGATGTTACGGAGAAACAATTTTCCCCAAACTCGTTTAAAAGTAAGGGGGTAACTTAAGTAAATTTGTTTTA AAATCCCCCTCTCCTCATGAACCAAAGAGAAAAGAGGTTTTGCCCCCCTTGATCTTCCCTCCTCTTAACCAAACATGATA AGAATTAAAATTTCTCCCCTCCCCTCCATTAAAATCTCTCACCTTCCCTCACCTCCCCTAAAATCCATCATCTCCCCTTC CCTCCCCTCCACTAAAATCCCGCATCTCCCCCTCCCCTCACCTCCCCTCCATTATAATTGCTCACCTCCTCCTCCATCTG TTGAGCCAAACACCCTTAATTTCTACTATTAAACAGAAATATGATATCTTAACAAAAAACGAAATGCTCATTTTACTCAT GGATTATGTTAGGTTCCATTTTCTAAATGGTTTTGTTGTATGCATATTTCTGCCCATATTTTCAGGGGCAAGAGAGGCGA TAAATTTTTCCCCATTCTCAGCATATCTGGGAGATTCATGTTCAATAACTTGGATAACAATAGCACAAGACGGGAAGTTG TGTGTTCTTTTGGATTGTGCTCGGCATTTGACAATGTTATTTAATAACTTGGATAACAATAACTCGGTATTCAACTTTTT GAATACATTATCGAGTTCCTTTTTCTTTCCAGCGGACTACATATTGCAACGCCTGATTTGCTGTTGTGTTTGCACTTCAA AAAACAGTTGGTACTTGTTTAGTTTCATTGACAAAGTAAATATAACTTTATTAGGTAAATTACACTCCACTACCTTGAGG TTTTCTTATTTGACTCTAAATTCCAAATTTACTTAAATATCAC
CDS sequence (LotjaGi1g1v0801200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGGGTGTTACAAGGCTCAAGACTATCCGCCCTGCTTTCTCTTCACTCAGACAATTCTCTTCCGTCGCCAAAGAGAT GACAGTGAGAGAGGCTCTCAACTCCGCACTTGATGAGGAAATGTCAGCAGATCCTAAAGTCTTCTTGATGGGTGAAGAGG TTGGAGAATATCAGGGTGCATACAAGATAACCAAGGGTCTGTTGGAGAAGTATGGCCCTGAGAGGGTTCTTGATACTCCA ATCACTGAGGCTGGGTTTACTGGGATTGGAGTAGGCGCTGCTTACTATGGTCTAAGACCTGTCGTGGAGTTTATGACATT TAACTTCTCCATGCAGGCAATAGATCACATTATTAATTCTGCTGCAAAATCAAACTACATGTCTGCTGGGCAAATAAATG TACCTATTGTCTTTAGAGGACCCAATGGTGCTGCTGCTGGGGTTGGTGCTCAACACTCTCAGTGTTATGCATCTTGGTAT GGCTCTTGCCCTGGGTTGAAAGTGCTATCACCATACTCATCTGAAGATGCTCGTGGTTTGCTTAAAGCAGCTATAAGGGA CCCTGATCCTGTAGTTTTCCTTGAAAATGAGTTGTTATATGGCGAGTCTTTCCCAGTTTCGGCCGAAGTTCTTGATTCCA GTTTTTGCCTTCCCATAGGAAAAGCAAAGATTGAGAGAGAAGGAAAAGATGTTACTATTACAGCCTTTTCAAAAATGGTT GGTTATGCTCTCAAGGCTGCTGAGATACTAGCAAAGGAAGGAATCAGTGCCGAGGTTATCAATTTGCGTTCGATCCGGCC GCTTGATCGATCCACAATCAATACTTCTGTCAGGAAAACCAACAGACTGGTGACAGTTGAGGAGGGTTTTCCTCAGCATG GTGTTGGTGCTGAAATCTGCACATCTGTCATTGAAGAGAGTTTTGGTTATCTTGATGCACCGGTTGAGAGAATTGCTGGG GCTGATGTTCCCATGCCTTATGCAGCAAATCTGGAGAGGATGGCTGTTCCACAGGTTGAAGATATTGTTCGTGCTGCAAA AAGAGCATGCTACAGATCTGTGCCTTTGGCCGCAGCTGCTTGA
Protein sequence (LotjaGi1g1v0801200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWGVTRLKTIRPAFSSLRQFSSVAKEMTVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKITKGLLEKYGPERVLDTP ITEAGFTGIGVGAAYYGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYASWY GSCPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKMV GYALKAAEILAKEGISAEVINLRSIRPLDRSTINTSVRKTNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAG ADVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPLAAAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 359 | 353 | 1.1E-237 | – | |
| PANTHER | 7 | 359 | 353 | 1.1E-237 | ||
| SUPERFAMILY | 25 | 206 | 182 | 3.32E-66 | ||
| Gene3D | 26 | 218 | 193 | 6.7E-85 | – | |
| Pfam | 26 | 201 | 176 | 9.8E-46 | ||
| SMART | 27 | 202 | 176 | 3.3E-62 | ||
| CDD | 31 | 197 | 167 | 1.08521E-109 | – | |
| SUPERFAMILY | 215 | 349 | 135 | 3.8E-43 | ||
| Gene3D | 219 | 350 | 132 | 4.4E-51 | ||
| Pfam | 220 | 342 | 123 | 3.2E-43 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Pyruvate dehydrogenase (acetyl-transferring) activity | Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2. | ||
| Biological process | Acetyl-CoA biosynthetic process from pyruvate | The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate. |
Expression pattern of LotjaGi1g1v0801200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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