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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0003600 |
| Transcript ID | LotjaGi2g1v0003600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT3G07200.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c; TrEMBL-Plants: tr|A0A0D2SKU0|A0A0D2SKU0_GOSRA Uncharacterized protein; Found in the gene: LotjaGi2g1v0003600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:1506926..1512294) extracted from Lotus japonicus Gifu genome v1.2.
GTGCATATGTTTTCCATGTATGTCCATTAATTTTCATCTCTCAAATTTTGTACCTTGAATTTTTTTACAGATTCTGACGT AAAAGATGAGTGCTCCGAATGGCTATTATTTTAGGGCTGCTCGAATGAGTGTTGGACCCAGGAGTTCGATGCGGATTCTG GATCCTTCTCCACCGAGAAGGTCTCGTGAGGTAGAGAGTCCTTCTTCTCCACCACCACAACAAGTTAATACAATTGATTT GGAAGTTGGTGATATTGATGATGATGATATCAACGTCATTGACTCCCCACCCAGAGATCTTTCCCAGGTATATCTCGTAC CATATCCTATCTAAATTAATTTATTAAATGTTATCTTAGCATGATTTTCATGACCGTTGTTATTGTTGTTGTTGCTGCTG CTGTTGTTGATGTTGTTGTTGTTGGTGTGGTGGTGTTGTTATTGTTGTTGATTTTGTTGTTGTTATTTTTGTTGTTGTTG TTGTTGTTGTTGTTGTTGTATCAGAGATATTAGTTCTAAACATACTCTATTCACTAGATACATCTGGCTATTGACGATCC ATAGACTTCATTACATGAAGACCTTATAATACTACTCACCTTATTTACCATCTATAAGAATTTACAACACAATATAATCA TGCATGAAATAGATAGAAAATATTGACTCTACATCAACAGGAGGGGATACCATGTCTGCCCTCCCTCAAGTTAAACACAC AAAACATTCAAGAGTCTAGCAAACATATTTTCAAATTATATAGACTATAGAAGTCAACACACAAATATCACAAACGACTA GGCCAAGTCATCTCCACTAGTTGGATCTGAAACTACCATCTCGGGATCCTCCTCCATCTCGTTGTCACTATTCTCTTGCG AGGCTTGAACTCTAGTTTCCGCCCTCGAAGACTTACCTCTAACAAATATGGCTCTATACTCTAGGGCATCTCTAAACCTC TTCGATCATCAAACTCTCTTATGGGTTGTGGTCACAATCTAGGATCCAATCCTCTAAGAAACGAGTGAAGTCAACGACTC AAATGGTGGAGCGGGCTAGTAGACACATGTATAGGACTATTTACCCTCTGGGGTATATTAGGTATGGGTTCAAGAGCTAG GGGTGGTTCTGGTGTTGGTAGTTTGGGTGGGTCAGCTACGCGAATACGAAGGGCACACACAGGTAAATAGAAGGATAATA GTATATGCATAGCTATAGGATAACCAACTTGTACGGATCTAGGTGGTTTGTACCAAAAGATATTTATCTTACTATATACA TACAAACTAGAGGCTGGGTCGAAACTCCAGCACGAATTTGAGGATAAATCAATGTGGATGAAAATCACTAGTATACATGT AATGAAATAAAAATATAACCACAATGGAAGGGTGAACTAAACACAAAATCGTGCATGATACACATATCAAGAGTGAAACT ATCTCAGATCAAGATAATATGTCATCATCATCACACACATATTAAAATAATGCTCAAGAACACACAAGTAAAAATATAAG TTGTAACTCCTCTCCTTCTCCCCTTCTCTTAGTTATCAGTGTACTTCCAACTACCTATGTCGTGCATCACACAACCACCA AGAAGAAAGCTCCTCGATTAACCTTTTTAGTGTGTAAATATCTCATATTTGTAGGTCTTGGAGCATGTTATGTCTTCAAT TATCTTTATAAAGCCATTTGGGAACATGGAAACTCCTTGCACCCGACTATTTACCATATCAAATGTGTTGTAAGCTTCTC AGTCAAATGCACATGACATCACCAGTCCTTAAACTTCTGCCAGCAAGACCTTTGGCATTCTGTCTTTATTGACAACGAGT AAAAACGTCTTGTCATCCTAGGTGATCCCATATTTGGACATAGCCAGTCATAGGCATCCTAGTATTATCCAATCTTCTAT AGTGGTAGTTGTTATGCTTTCCTACTCTTAATATCTCCCAAAGTGGTTATACAATCAAACAAACATCTCTCCCTTATATC TTTCCACCAACGTCGTCCAAGATTCACTAAGATAATGATTTCTAGGACCAACATCCGAATATACCACTTATTAAATAAGT AGATCTCACCACAGAAAAAATGTCTGATATAAAATACAAGCACGTTGTCTTGCACTTATTTTATGAAAAGTTTCACTTCC TATTTTTCATTTATCCTCTTATATACATGAAACTAACTAATACTAAGGGTGATTCCTATTGGTTATTTAGGTAGGAAAAT TTCATAAAAGCTAGTGTCAAGACCATCCACTTCATAGATTTTCCTCTGCCCTACTGCTTCAGATACTAACTATTTTTTCT TATAAAACATTTTAGGGTTGAACCTAAGGCATAATTTCTTAGTACCACTTATCTTATAGTGTACTTCCCACCTTCTAAGG TACAATCATAGAAATATGCATTTAGAGATGCATACAGTTCAGTCAAATAGTTCTGATAGTCAACATACATATCATTTTGC AATCAAGGATCTACCTTATCACACAATGATCAGTCAATCATTCTATCACATAAGATCAAGTCCAAACAATCATGACAATC AACCACAACACAAGCTCCAACAATGATAATATACATTCTATCATTCTGATAACTACTCGGACTACATCCACCATGACAAC ATATAGTTTAACCCCATTACCTCGGGTTCCATAGTTATGATTGAGGTCGAGGTCTTGATCTTGCTTCTCTACATTACTGA TACACAGTCGTCACTACTACTCAAAGTTATGCGCGCGTGCGCAGACACACTTAAGCACCTAGAGAATTTATAGATTGCTA TTAATCATCCTTAGCTTTATTATTTTCATTTCTACCATCCATGATCCTCATTACCATCTTATCTTTAGTAATGTTCCCAT CCTTTCAAAATTCAAAAACTAACTTATATCGATGCACTAAATGCTAAATTTATTATTATTAAAGTATTTATGATATGCTT AAAAGTTATTACTTGTTAGAAACTAATACTAGATGTGTGTTTGTATTTTTCTTGGTTTAAGGTTGGAACTGCAAGGAGGA CTCGTAGAAGGATTAACAATATTGTGGATTTGGGTAATGTATTATTACTTTTAACAATGTTGGTGAAATTTGTTTTGTAA TTTTTTTTTCATAATAAATTTGAATATTTAGATGATCATTTCCTTTTCTTTATTATTGTTTAGGGTTTTTTATTTTATTT TATGTCGAGGTGGGCAGTTATGTGGGTATGCATGGTTTCCATTTCATTACAAAATGTACATTACTTTTTTGTTTACTCGT GGTACTTCACTCCATTTTTTTCTTCATTATATTTTTTTTTGGTGACCAAAATTATATTTTCCAAAGAAGACTGCTATTTT CTATCGGTTGAGTTAGGTTTATGGCCTGTAGATGCCTTCATCTAGGTATTGCCTCATGATGGTTGAAATTTAATTTTTCT TTAATTAAATTAGATGTATTTTTTATTACAATTATATTTTGCATTGAAGAAATTTGTATCTTTCAATTTATGACAGTACT TTTATTTTATAATATTGTTTTCATATTTCACTTCACTATTTTTTTATTTGCTTACTCTCCATCCTTTTAGTATTTCTAGT ATCATAGCAAATGTCATTCTTAAACAATTAATTAATGATGGAGATTGGTAGTTTTTAGTTGTTTACTAAAGTTCTCTAAT TTTTATAAGGTATCTATTACTAATGTGATAGTTTAACATATCTGCCACTCATGATCATTGTTGCAGATCAATCCACGACA TCTGATAATAATCACATTAGACGTAGTAGAAGACTTCTCAAAAAAACACCAATTAGTTCAGAAGGATCTAACAAGTCTAA GGTAATGAAATTCTAGATTCATGCATTATGATTTTATATTATGTAATTCTTTTTTCTTTTGATTATAAATATCAAGTTGG TGTCAAAATGCCTATCTTAATAATGTGAAGTCAATAATTTGCCACAAATTATTAGCTTCATTACACTACATATCCATATT TAACCTAAATTAAAAACTAAATTTTTTCCTTCATTAGTTCAATTTAAACATACAAATTTTAAAAAATTTATGAAAATAAT TTAGTGTGGGGTTTGGGGCCCCAACTCAAGACAGGAAAAGTTGTCAAGCTCAAAGAGCACGTACAGTAGACTTACATTTA CCTCACCTAAAGGGGATGAGTGAGGGCTCAAACCTGAAACCTGTCCAATACAAGGTCATATCATGCTCCACTCGACCAAG CCCATGGGGATAAATAAATTTATATTTTATTATTGATGTGTGTTGGATTTCAAATTCCTAACTTGATTATATTTTTATAC ATAATGCAAATGCTCGAAAGGTGCCTGAGCTTCCAAGGGAGTCAATCTTTAAATGCCCAATATGTATGTGTCCTATGGTG AAAGAAATGTCAACAATGTGTGGTCACATTTTTTGCAAGAAATGCATTACAGCTGCAATAGATGCACAAAGTAAATGCCC TACCTGTAGGAAATTTGTTACTATGAAAGAGCTTAGAAGGGTGTTTCTTCCATCAGCTAATTGAAGGTATAAACAAAACA AATTTTTAGTTTAACGAGTTAGATTTTGTTTTCTCTTGTCATTTTGACTTTCTATATATTCATCATTGAAGCATGTGTAT TTCATTTTGGTTGTCGTACATGTCTCTAGTACTTACCTAGTACCATTACTCATTGAATACTTCATTATATCATTTTTTCT TGGTGGATACTCACCTTGCATTGGTTGATAGTGAATAAATGACTAAATTTTTATTTTCTTTCTTACCCAGTGTACAAATC TCCATTTTTTGATATGCTTAGGTTTATAATTACAACATTTTAAATGATAGTTTTTTACTGTAAAATTGTTTTTCTAACTT GTTCAAAATATAATCTTCTGATGTTTGTGTGTATATACATATATTTATATATCATATATGCATACCTATATGTAAGTTTG TAAAAAATCACGAACCTCATAGTTGTATCCCTACCTGGGACTGGTATTGTACATGTACTAGATAGTGCAACATAGATGTT CAAAGTAAAAATATGTTGTTCGATCTAATTAAATTTTAGGTCAACCTAAATTCTAACTGATTTCTCTTTTACCATGTAAT AGGATCCTCTTCCAAACATTACTGAGAAGAATCGAGATTGGCAGGAACTTCATTCTAGTTTGGGCATCCTCAATCGAAGT TGTTTCTGTTTACTCATTTGCAAAAACAATACATGGACATGTTTTTAAGACACAATTCAATGCTCATTTCAGTTGAGAAA TAATTTTCACAAGGGATTTATGTAGATGTTTATTTACAAGATTATTTCCCATTATATCTAGCGAAACTGCTTGTGAGAAT AAATATTTG
CDS sequence (LotjaGi2g1v0003600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGCTCCGAATGGCTATTATTTTAGGGCTGCTCGAATGAGTGTTGGACCCAGGAGTTCGATGCGGATTCTGGATCC TTCTCCACCGAGAAGGTCTCGTGAGGTAGAGAGTCCTTCTTCTCCACCACCACAACAAGTTAATACAATTGATTTGGAAG TTGGTGATATTGATGATGATGATATCAACGTCATTGACTCCCCACCCAGAGATCTTTCCCAGGTTGGAACTGCAAGGAGG ACTCGTAGAAGGATTAACAATATTGTGGATTTGGATCAATCCACGACATCTGATAATAATCACATTAGACGTAGTAGAAG ACTTCTCAAAAAAACACCAATTAGTTCAGAAGGATCTAACAAGTCTAAGGTGCCTGAGCTTCCAAGGGAGTCAATCTTTA AATGCCCAATATGTATGTGTCCTATGGTGAAAGAAATGTCAACAATGTGTGGTCACATTTTTTGCAAGAAATGCATTACA GCTGCAATAGATGCACAAAGTAAATGCCCTACCTGTAGGAAATTTGTTACTATGAAAGAGCTTAGAAGGGTGTTTCTTCC ATCAGCTAATTGA
Protein sequence (LotjaGi2g1v0003600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAPNGYYFRAARMSVGPRSSMRILDPSPPRRSREVESPSSPPPQQVNTIDLEVGDIDDDDINVIDSPPRDLSQVGTARR TRRRINNIVDLDQSTTSDNNHIRRSRRLLKKTPISSEGSNKSKVPELPRESIFKCPICMCPMVKEMSTMCGHIFCKKCIT AAIDAQSKCPTCRKFVTMKELRRVFLPSAN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 48 | 48 | - | – | |
| PANTHER | 29 | 189 | 161 | 4.3E-43 | – | |
| MobiDBLite | 34 | 48 | 15 | - | – | |
| Gene3D | 82 | 187 | 106 | 4.8E-17 | ||
| SUPERFAMILY | 134 | 179 | 46 | 5.3E-16 | – | |
| Pfam | 134 | 173 | 40 | 3.8E-9 | ||
| ProSiteProfiles | 135 | 173 | 39 | 12.283 | ||
| SMART | 135 | 172 | 38 | 2.8E-4 | ||
| ProSitePatterns | 150 | 159 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0003600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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