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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0007300 |
Transcript ID | LotjaGi2g1v0007300.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | ENTH/ANTH/VHS superfamily protein; TAIR: AT1G25240.1 ENTH/VHS/GAT family protein; Swiss-Prot: sp|Q9FRH3|CAP13_ARATH Putative clathrin assembly protein At1g25240; TrEMBL-Plants: tr|A0A151R3S9|A0A151R3S9_CAJCA Putative clathrin assembly protein family; Found in the gene: LotjaGi2g1v0007300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:2642398..2644705) extracted from Lotus japonicus Gifu genome v1.2.
CACCACCACACTGCATGCCTTGAGTTGTATCTTGGTTAATCAACATATTTCAAATAATCAATTTTCATAGATCGATCCCA ACGCAAAAGCCCTTCGTTTTTCCTTCTCAAGCTTTCTGGGCTCTCGTTGTAAGTAGCATCTTCTCAGAGTTGATTCTAAA ACCAAAATCAATTCAGGAAGAAATTAAAGCTATAGTTTCTAAATATCAGAATTGATTCTGAGAAAAGAGAAATTAAATTG AAGGCAAAATGAGGATTTGGAAAAAGGCCACCGGAGCTCTCAAAGACAGGTACAGCATTTTGGTCGCAAAGCTCTCACCG TACGGTCCTTGCCGGAACCCTGATCTTGAAACAGCGATCATCAAGGCCACGAGCCACGACGAACAGTTCATGGATTATAA GAACGTTCAGAGAGTTTTCCAATGGCTACGAATGTCACAGTTGTATCTGAAGCCTCTTTTGTACACTCTCTCTTTGAGAT TGGAAAGGACTCGCAGCTGGGTGGTGGCACTCAAAGGGTTAATGCTCATTCATGGGTTGTTTTGCTTTGAACTACCAGCC GTGCATGTCATGGGAAGGTTGCCGTTTGATCTATCACATTTCAGTGATCGCCACATAAGCCCAGAAAATGCATGGTTTTT CAACGCCTTTGTTCGTTCATATTTTGCATATTTGGATCAAAGGTAAGCAAGGCTCATGCTACATTTTTCGCATATTTTCT AGAGAAATTTTTCTGGTACAAAATAATCTGCAAATATAATTTTCTGCAAATTAAAGTTCATTTTCTGCGACATGAGGCTT GGGGGAGGGTAACATTCAGAATCAACAATTGAGGGTAATTTGGTGAGTTGCACTTTTGAGCATCTGGATTCACAAAAAGC TTTAATTTTAAGGAATGAAAATTTAAATCTAGAAATTGTCCTTGATTTGGGCCCGTGCTTAATTATTTGAACTGATCTGA TAGCTTAAGCGCTTAATTATGCAAGTGTTTGGCTCAGAGCGAATGTGATGGAGTTCAATTTTTCTTTTCATGGGTGGGTG AGGGAATATCAACAGTGTAGGGAAGTGTTTTTGTTGAGCTGCATGAGCGCAGCGCGCATGTCCAAAATGTAGGGATGTGG GAGAGTGACTTGATGTTGAAGTCTTGTCCAAAATGCCTTCAGGCTATTAAGGATGCAACTCTCTGGCTTATATTCTCAGT TTATTCTAAAAGGAAAATCTCATATTGTATGCTGTGGGAGAGTGACTTGATGCTGAGGAGAAGCCTAGCCCAAACGCATT GTGGGACTTTTTCCTGCTATTTCATCAGTTTTTTTTTCTGAACTGTGTATCTGTTCTGCGTATTGCTTGTACCCTTCTTT AGTTTTATATAATATATATGTTGTTTTGTTTGCTGAGAAAAATTGCTTAATGTGTTAAATTTTTTTAAAGGTCAATACTA GCGCATTTGGAGGTGAAGAGAGAGAGCAAAAATGCCAAAACTGAACTGACATTGATGGAAGAGCTGAGGAATTTGGAGAA GTTGCAAGGGTTGACTGACAAGCTTCTACAAATCAAGCCCAGGAATAAGAATCACATGAATGTTGTCCTCATTCTTGAAG CCATGGATTGTGTTGTGGAGGAGGTTCTGGAAGTGTATGGTAAATTTAGCAAAGGGGTTGACAGAGTGTTGTTGAGAATA TTTGATATTGGTGGGAAAGAAGAAGCAAGCGTTTTCCTTGATATTTTGGTCAAAGCTGAAGTGCAAGGTGGGAAGCTCTC TTTGTACTTTGATTTTTGTAAGGATATTGGGGTCCTCAGTGCCTCTCAGTGTCCTAAAATTGTGAGGATCCCTGAAAAGG ACATTGAAGAGCTCCATAGAATGATAAATGGTGGAGAATCTGATGACAAGGCCATTGTTTTGGTTAGAGATTGCAGTGCC ATTGCCACCATTTCTGAGCAGAAGGGTTTAAAAACTGTGATCACTGATCAATGGGAAGTATTTGATGATGATATAATAGT TGATGTTAACCAAAATGCCTCCTCCATTGTCCCAAGCGTTACGGCCATTAACCCTTTTGTGGAATCTTATAGTCTTGTCC CTTACTGTAATCCTGTTCACAATTATGATTTTCCAGATCTAATTAGTTTATAGCACTGAGACAATTATGTGATTCCCTTT TTTTTTCATATCAGGAGGCTTGCTATGTATTAGTACATATGTAATACATTGGATCATGTGTAAAAGGAAAAAAAACAGTT ATAGGATAAAGTTCTTATATTGTTTAGGAATATTAATGTGATTCTTTTCGTGGATTACTTACGGGCGG
CDS sequence (LotjaGi2g1v0007300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGATTTGGAAAAAGGCCACCGGAGCTCTCAAAGACAGGTACAGCATTTTGGTCGCAAAGCTCTCACCGTACGGTCC TTGCCGGAACCCTGATCTTGAAACAGCGATCATCAAGGCCACGAGCCACGACGAACAGTTCATGGATTATAAGAACGTTC AGAGAGTTTTCCAATGGCTACGAATGTCACAGTTGTATCTGAAGCCTCTTTTGTACACTCTCTCTTTGAGATTGGAAAGG ACTCGCAGCTGGGTGGTGGCACTCAAAGGGTTAATGCTCATTCATGGGTTGTTTTGCTTTGAACTACCAGCCGTGCATGT CATGGGAAGGTTGCCGTTTGATCTATCACATTTCAGTGATCGCCACATAAGCCCAGAAAATGCATGGTTTTTCAACGCCT TTGTTCGTTCATATTTTGCATATTTGGATCAAAGGTCAATACTAGCGCATTTGGAGGTGAAGAGAGAGAGCAAAAATGCC AAAACTGAACTGACATTGATGGAAGAGCTGAGGAATTTGGAGAAGTTGCAAGGGTTGACTGACAAGCTTCTACAAATCAA GCCCAGGAATAAGAATCACATGAATGTTGTCCTCATTCTTGAAGCCATGGATTGTGTTGTGGAGGAGGTTCTGGAAGTGT ATGGTAAATTTAGCAAAGGGGTTGACAGAGTGTTGTTGAGAATATTTGATATTGGTGGGAAAGAAGAAGCAAGCGTTTTC CTTGATATTTTGGTCAAAGCTGAAGTGCAAGGTGGGAAGCTCTCTTTGTACTTTGATTTTTGTAAGGATATTGGGGTCCT CAGTGCCTCTCAGTGTCCTAAAATTGTGAGGATCCCTGAAAAGGACATTGAAGAGCTCCATAGAATGATAAATGGTGGAG AATCTGATGACAAGGCCATTGTTTTGGTTAGAGATTGCAGTGCCATTGCCACCATTTCTGAGCAGAAGGGTTTAAAAACT GTGATCACTGATCAATGGGAAGTATTTGATGATGATATAATAGTTGATGTTAACCAAAATGCCTCCTCCATTGTCCCAAG CGTTACGGCCATTAACCCTTTTGTGGAATCTTATAGTCTTGTCCCTTACTGTAATCCTGTTCACAATTATGATTTTCCAG ATCTAATTAGTTTATAG
Protein sequence (LotjaGi2g1v0007300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRIWKKATGALKDRYSILVAKLSPYGPCRNPDLETAIIKATSHDEQFMDYKNVQRVFQWLRMSQLYLKPLLYTLSLRLER TRSWVVALKGLMLIHGLFCFELPAVHVMGRLPFDLSHFSDRHISPENAWFFNAFVRSYFAYLDQRSILAHLEVKRESKNA KTELTLMEELRNLEKLQGLTDKLLQIKPRNKNHMNVVLILEAMDCVVEEVLEVYGKFSKGVDRVLLRIFDIGGKEEASVF LDILVKAEVQGGKLSLYFDFCKDIGVLSASQCPKIVRIPEKDIEELHRMINGGESDDKAIVLVRDCSAIATISEQKGLKT VITDQWEVFDDDIIVDVNQNASSIVPSVTAINPFVESYSLVPYCNPVHNYDFPDLISL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 377 | 377 | 8.7E-137 | – | |
PANTHER | 1 | 377 | 377 | 8.7E-137 | – | |
Gene3D | 3 | 152 | 150 | 8.9E-25 | ||
ProSiteProfiles | 25 | 156 | 132 | 14.775 | ||
Pfam | 32 | 290 | 259 | 1.1E-48 | ||
SUPERFAMILY | 32 | 147 | 116 | 2.88E-18 | ||
CDD | 33 | 149 | 117 | 6.20415E-48 | – | |
TMHMM | 83 | 105 | 23 | - | – | |
Gene3D | 153 | 305 | 153 | 3.4E-21 | ||
SUPERFAMILY | 163 | 291 | 129 | 9.42E-17 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Phospholipid binding | Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester. | ||
Molecular function | 1-phosphatidylinositol binding | Interacting selectively and non-covalently with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. | ||
Cellular component | Clathrin-coated vesicle | A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes. | ||
Molecular function | Clathrin binding | Interacting selectively and non-covalently with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles. | ||
Biological process | Clathrin coat assembly | The process that results in the assembly of clathrin triskelia into the ordered structure known as a clathrin cage. |
Expression pattern of LotjaGi2g1v0007300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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