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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0007900 |
| Transcript ID | LotjaGi2g1v0007900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G36930.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A072U7H9|A0A072U7H9_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi2g1v0007900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:2758202..2760084) extracted from Lotus japonicus Gifu genome v1.2.
GATTGGTGATATTCTCAAAACTGTTACCACAAGACTAGACGACAGCGCATACTTACTTGTTGCTGATCACCCAGTGGGAG TGGAATCTAGTGTGCAGGACATGATTCAATTATTAAGTGGTAAATCAAATGAGGTTCGCATAGTTGGAATCTTGGGAATG GGAGGAAGTGGTAAAACAACCATTGCCAAAGCCATTTACAATGAAATTAATCAGAATTTTGAAGGTAAAAGCTTCCTTTC AAATATAAGGGAAGCTTGGGACCAAGATGATGGCCGAGTTTCTTTGCAAGAACAACTTCTTTCAGGCATATTGAGAACTA GAAGGATGAAATTACATAGCATTGAATTGGGAAAAACAATAATAAAGGAAAGACTTTGCCATAAGAGGGCACTTGTTGTA CTTGATGATATAAATAGTTTGGACCAACTAAATGCTCTGTGTGGAAGTCGTGAATGGTTTGGTCAAGGAAGTAGGTTAAT CATCACAACTAGAGATGAGCATTTACTCAATGTTCTTCAAGTGGTTCATATATACAGAACCCAAGAAATGGATGAAAGTG AGTCTCTTGAGCTTTTTAGTTGGCATGCATTTAAGCAAGTTGCTCCAACAGCAGATTTCTTTGAACTCTCAAGAAGGGTT GTTGCTTACTCTGGAAGACTACCACTAACCCTTGAAGTTCTTGGTTCTTATTTGTTTGGAAGGAAAATTGCTGAGTGGGA AAGTACATTATCGAAACTTGAACTGATTCCCAATGATCAAATACAGAAGAAATTAAAATTAAGCTATGATGGTTTAAGTG ATGAAATGGAGAAAGATATATTCCTTGAAATATGTTGTTTCTTTATAGGGAAGGGCAGAAACTATGTTACACAGATTTTA GATGGATGTGGACTTCATGCAGAAATCGGGATTACTGTCCTCATAGAGCGAAACCTTGTAAAAGTTGACAAGAATAATAA GCTTGAAATGCATGATTTGCTCAAAGTAATGGGACGAGAGATTATTCGTGAGATGCCACCTGAGCAGCCGGAGGAGCGCA GCCGATTATGGTTTCATGATGATGTAGTTGATGTGATGACCATTGACCAGCAACACTGTAAGAACTTCTCATATACTTCG ATATACATATATAGGATATGGGGAATGCTAACTTACTCCCACTTGATTTTGTGAAGGAGTAAGTTAGCACCCAACACCTT TTCTTTTGGACCAAAAACTCCAAATCTCTTTCCTTAAAACAATTAAAGCGGGGTTATTTATGTAATTTTGTTTATCAAAC TTATTTAATTTTAAACACAAATTTTCTCTCTCTTCAACCTTTCTCTATCTTCAACTTCTTCCTTCAATGCTGCCACTTCT CTGCAACAACTCATTGCCCGTTTTCAAATTTCTTCCTCCAAGAACCAAATCAATTTTTATTTATTAGCAAAAAGTAAAAC CCCCTTCCTCTGTTCATTCTTGTTTCTGCAAATACAGATTTGGTTTCTACAATTTCGGTTTCAAAATTCTCATTCTTCTC TCTGACGTTTTCCCCAATTCATGATACACCCACCTTGCCCAACCAGTTTTAAAGTCTGGGCATTTTTTACTTCTCCCAGT TGACAAGATGAAAAGTCAAAATATATTATTATTGACAAGAGAAAGGGAACTAAAAACATCCAGCCCATTCTGCCAGTTCA CCATCCCGCCGCCGGTACCATCCCTGTCGCCCACCACTGCCTCGCCCACTCTGCTGGCAGCTTCATCGTTGTGATTCCGG TGGAGGGTTGAACATGGAAGCCATCAGAGAAGCCATTAGAGAAAGAGAAGATCTCATAGAAAGGGAAGATGTTAATAAGG AGAGAGAAAACAGTACAAGCATTGTACAAAATTACACAAAAAC
CDS sequence (LotjaGi2g1v0007900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCAATTATTAAGTGGTAAATCAAATGAGGTTCGCATAGTTGGAATCTTGGGAATGGGAGGAAGTGGTAAAACAAC CATTGCCAAAGCCATTTACAATGAAATTAATCAGAATTTTGAAGGTAAAAGCTTCCTTTCAAATATAAGGGAAGCTTGGG ACCAAGATGATGGCCGAGTTTCTTTGCAAGAACAACTTCTTTCAGGCATATTGAGAACTAGAAGGATGAAATTACATAGC ATTGAATTGGGAAAAACAATAATAAAGGAAAGACTTTGCCATAAGAGGGCACTTGTTGTACTTGATGATATAAATAGTTT GGACCAACTAAATGCTCTGTGTGGAAGTCGTGAATGGTTTGGTCAAGGAAGTAGGTTAATCATCACAACTAGAGATGAGC ATTTACTCAATGTTCTTCAAGTGGTTCATATATACAGAACCCAAGAAATGGATGAAAGTGAGTCTCTTGAGCTTTTTAGT TGGCATGCATTTAAGCAAGTTGCTCCAACAGCAGATTTCTTTGAACTCTCAAGAAGGGTTGTTGCTTACTCTGGAAGACT ACCACTAACCCTTGAAGTTCTTGGTTCTTATTTGTTTGGAAGGAAAATTGCTGAGTGGGAAAGTACATTATCGAAACTTG AACTGATTCCCAATGATCAAATACAGAAGAAATTAAAATTAAGCTATGATGGTTTAAGTGATGAAATGGAGAAAGATATA TTCCTTGAAATATGTTGTTTCTTTATAGGGAAGGGCAGAAACTATGTTACACAGATTTTAGATGGATGTGGACTTCATGC AGAAATCGGGATTACTGTCCTCATAGAGCGAAACCTTGTAAAAGTTGACAAGAATAATAAGCTTGAAATGCATGATTTGC TCAAAGTAATGGGACGAGAGATTATTCGTGAGATGCCACCTGAGCAGCCGGAGGAGCGCAGCCGATTATGGTTTCATGAT GATGTAGTTGATGTGATGACCATTGACCAGCAACACTGTAAGAACTTCTCATATACTTCGATATACATATATAGGATATG GGGAATGCTAACTTACTCCCACTTGATTTTGTGA
Protein sequence (LotjaGi2g1v0007900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIQLLSGKSNEVRIVGILGMGGSGKTTIAKAIYNEINQNFEGKSFLSNIREAWDQDDGRVSLQEQLLSGILRTRRMKLHS IELGKTIIKERLCHKRALVVLDDINSLDQLNALCGSREWFGQGSRLIITTRDEHLLNVLQVVHIYRTQEMDESESLELFS WHAFKQVAPTADFFELSRRVVAYSGRLPLTLEVLGSYLFGRKIAEWESTLSKLELIPNDQIQKKLKLSYDGLSDEMEKDI FLEICCFFIGKGRNYVTQILDGCGLHAEIGITVLIERNLVKVDKNNKLEMHDLLKVMGREIIREMPPEQPEERSRLWFHD DVVDVMTIDQQHCKNFSYTSIYIYRIWGMLTYSHLIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 144 | 144 | 9.4E-29 | – | |
| PANTHER | 4 | 329 | 326 | 1.3E-152 | – | |
| SUPERFAMILY | 4 | 242 | 239 | 1.65E-60 | ||
| PANTHER | 4 | 329 | 326 | 1.3E-152 | – | |
| Pfam | 5 | 229 | 225 | 3.7E-26 | ||
| CDD | 5 | 137 | 133 | 0.00251799 | – | |
| SMART | 11 | 149 | 139 | 8.4E-4 | ||
| PRINTS | 14 | 29 | 16 | 8.8E-16 | – | |
| PRINTS | 91 | 105 | 15 | 8.8E-16 | – | |
| PRINTS | 184 | 198 | 15 | 8.8E-16 | – | |
| SUPERFAMILY | 219 | 326 | 108 | 4.9E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi2g1v0007900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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