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LotjaGi2g1v0013800.7

Overview

Field Value
Gene ID LotjaGi2g1v0013800
Transcript ID LotjaGi2g1v0013800.7
Related isoforms 7
Lotus japonicus genome version Gifu v1.2
Description Zinc finger protein, putative; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|A0A068UDX2|A0A068UDX2_COFCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0013800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:5015232..5015615) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCAACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGGGAGCAAAATTTACAGCTCCACAGAAGAGG ACACAACTTGCCTTGGAAACTAAAGCAGAAGAATACAAAAGAGCAGGCAAAGAGAAAGGTTTATCTCTGTCCTGAACCCA CTTGTGTCCACCATGACCCTTCACGGGCTCTTGGAGACCTCACTGGGATCAAGAAGCACTTCTCTCGGAAGCACGGTGAG AAGAAGTGGAAGTGTGAAAAGTGCTCTAAGAAGTATGCTGTTCAATCAGATTGGAAAGCACATTCTAAGACTTGTGGTAC AAGAGAGTATAGATGTGACTGTGGCACTCTCTTCTCCAGGTACCAAAATCTATGTCCAACTTAG 

CDS sequence (LotjaGi2g1v0013800.7) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGGGAGCAAAATTTACAGCTCCACAGAAGAGG ACACAACTTGCCTTGGAAACTAAAGCAGAAGAATACAAAAGAGCAGGCAAAGAGAAAGGTTTATCTCTGTCCTGAACCCA CTTGTGTCCACCATGACCCTTCACGGGCTCTTGGAGACCTCACTGGGATCAAGAAGCACTTCTCTCGGAAGCACGGTGAG AAGAAGTGGAAGTGTGAAAAGTGCTCTAAGAAGTATGCTGTTCAATCAGATTGGAAAGCACATTCTAAGACTTGTGGTAC AAGAGAGTATAGATGTGACTGTGGCACTCTCTTCTCCAGGTACCAAAATCTATGTCCAACTTAG 

Protein sequence (LotjaGi2g1v0013800.7) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKNTKEQAKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE KKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRYQNLCPT 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 120 120 8.3E-105
PANTHER 1 120 120 8.3E-105
Gene3D 2 29 28 4.6E-6
SUPERFAMILY 5 103 99 1.54E-8
SMART 6 28 23 0.0052
ProSiteProfiles 6 28 23 10.99
Pfam 6 28 23 3.9E-6
ProSitePatterns 8 28 21 -
Gene3D 40 126 87 5.1E-6
SMART 48 78 31 160.0
SMART 83 103 21 140.0

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0013800.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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