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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0063000 |
| Transcript ID | LotjaGi2g1v0063000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G62350.2 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q1PFH7|PPR89_ARATH Pentatricopeptide repeat-containing protein At1g62350; TrEMBL-Plants: tr|G7I945|G7I945_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi2g1v0063000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:14591705..14595348) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTTTTTAATTAATAATAACAAACGAAACATATAGATGTAATCACAAGAAAATGCAGAACATAGTAGCACACACAGGT GCTGCACCAAGGCAACTCTTCTGAATCCTTAATGCTGCGGCTTGCACTGCGAAGAGCTTCTTCAGCGGCCACCGCGTACA CCCTTAATGGCGGTGGCCGGTTAATTTCCGGTTCGGCGTCGAGTCCGAGCCTTTCGATATGGAGGCGGAGGAAGGAGTTG GGGAAAGAAGGCCTCGTCGTCGCTAAAGAGCTCAAGAGGCTCCAATCCGACCCGGTCCGCCTCGACCGGTTCATCCGGTC CAGCGTTTCTCGCTTACTCAAGTCAGACCTTGTTGCCGTCCTCGCTGAGTTTCAGAGACAGGACAATGTCTTTCTCTCCA TCAAGGTTCTTTCTTTTTCTTTTATCTGTTTCTCATAGATGGAAGTTGAACACTTTTTATTTATATAAATTTTTTTAATT AATTAGGTTAGCTGATATATTGATTTTTTTGTGTGGTATTGTTGATTTCTAGATTGTCATTTTGGTGTGTGATAACTAAT ATGAGAAGGTTAAGTGATGGATTTGGTGGCACTTAATTGTTTACTTGGGAAGTTACATAGAAGATCAGCTAGGTCATTTA AACTGGAATTTGTCTTTTAATGGTGATAAGAAGCAAAAAGAAAAATAGAAACCGTTTTTGTTGAATTTTGCTCTTTTAAA GTCAGTAATAATTCACTTTAAATAAAAAAATGTCAAGATATTCCAGTCACTGGTACGAAAATAAGGGTTATTCGAGATAA TTAGTATTGGTTTTCTTTTTTATGTAAGAGCTAACTTTAGATGAATCAAAATCCTTTCTATGCTAATTACAAGTTACAAT GTTACTTGCAGCCAACAATATGGCCTTACCCTGTCTTAATCTCAATATGATGCTAGATTCATTATGTTTCTTACATTTTC ATTGAGTATGAGTTGCATTGTAGCAAAGCAACCCGGTGATTATGGACTGGACATGAGCTGTCACATTCTAATGCCCTGAA AAATATAATTTTAATTTTTAGGGGGGGAGGTCTTTGATATCAACTCTTGAATGTTGGAAGACATTGATGTTTGTAGAGTA GGGTGGCTATCAGGGTATGAATGCTTTCATAAGCTTCAGAAAAAGCCGAGAAAATATTAATCCAAATTTCAAAGAGCAAA TAGACCTACTATTTTATTGTATTGACCATTAACAAAAACTAATTTCCAGTTGTGTACTCCTGTCATCTTGAAAGCTTGGC CTATCTGAGAAGAAGCAACAAGAGAGTGTGTTTTTGAACTCTTGACCTAACTCTTACGAGTTCACGATTCTAAAACACAA TCGCATGTAAAGAGTAAACTCTCTTTTTGACAAAATTGATAAACTCTGTTGTTTTGATAAGTTCTGAGGATGTATAAATG GTGTTGGCCTCAAAATGTACACTACTACACTTTTGGTTGACGCTCTTAAATCTTATGTACTTGGGTTGAATTGCTTATGC TCTGTAATGTGTTCGATTATAAAGCTAATTTTATGTTTTCATCAGTTTTTCCCTTTTGTTAACCACAAGATAATGTTAGT GCTTGGCAAAGTATAATTAACATAAAAGTAGGGCGGTTGGGCCAAGTATAGAGTTATGTTTATACCTTTTAGTTGCTTTG TTATGAAGTTGTGACGTTGAATGCATATGGATATGGTATTATATATGTTTGGATAACAAGATATATTTTCTAAATAGTAT TTTTGATGCATTTAAACTCGTAACAGCTCAAGAATTGTGTTTAGGATTTGACTTTATCAAGTCTTCATGAGTTTTCCTAA ACACTCAAGTAACAAACTCTAAGCATTGTCTTGGATGTAAACTCATAAGAGAATTGAGATTAATGAGAGAGCACTACCTA ATAAGAAATGACATTCATTTTTGTTGAAATTATGAAGATCAAGTGATCAACTATCCAGCTAATTCTTCTCCTACTTATTT TTGAGCTATATTTGAGAAAAAAATATCTTGAGCAAACCAATTGATTTGCTTTGTTTCATACTCCTATGCTACTGTACTTT ATGACTGAAAATGACTTATTTAATCCTAATGTGTAATGAATATGTAATACAAATTGAACCAGAAAAAACACAATAATTGA GTGCAGAGCAAAATTCTTGATGTTGACTTTGACTTAGCTAAGTAATTGATCTCAAATTTGAACGTGCATGGGTTATTTAA CTATGAATCTTTCATTTCTCAGTTGTATGATATTGTGCGCAAAGAAATTTGGTACAGGCCGGACATGTTCTTCTACAGAG ACATGCTTATGATGCTTGCAAGAAACAGAAGGGTTGAAGAAGCAAAGAGAGTCTGGAATGATTTGAAAGGGGAGGAGGTT TTATTTGATCAGCATACATTTGGAGACATCATTAGATCTTTTCTAGACAGTGGATTGCCCTCAGAGGCAATGGAAATATA TGAAGAAATGAGACAATCCCCTGAGCCCCCTCTGTCGTTGCCTTTTCGCGTGATATTGAAAGGGCTCATTCCATATCCAG AACTAAGAGAAAAGGTAAAAGATGACTTTTTAGAGGTTTTCCCTGATATGATCATCTATGACCCACCCGAGGACTTGTTC GATGATGATGAAAAACCCAAGGATGAAGCTAATGAGAATGTTACTGCTTGATGTTGAGATATTGATGCTTACAGCTTGAT GTCATGCAATGTGGGGAGATGGTAGCTGTTGTTGTAAGTATCCACAAATTGTTTTGCTTCTGTTTTGGTCAGCTCAGATT TTCCAACTTTTGAAGTTCTGTTTTTTTTTTAGTGTAATCATTGTACATCTGAGCCTCAACAGAATGAGAGAATGTTGATT TTGATGATGCATTACTTGAGCTTAGGTTTGAAATAGATAAGGAGGTTGTTCAATGATAAAAATATTTAGTGCTGATTTTG TTAGTTGGCTTTTAGTTCTCTAAGTGTAGTTTTTAAGCTGGTTTTTGTTGCCTTTTATCAGGGTGAATTATGCTTTCCCC TTAGTATGTAGGCTCTTAGTTTTATCTTGGCTTAATTCCAGTTTGGGTCCCTGATGTTTCACAAATGTGTGGTCTGCACC CCCGTGTTTAAAATGTGCGGTCAAGCTCCATGATGTCTCTAAAACGTGTGATCCAAGCCCTTCCGTCTGTTTCCGTCAGT TGACCGAACGGAGCTCGCCACCAGGTCATTCATTAAATAACGTGGTTTGTCCACGTGTAATAAAACATCTGAGCCTCAAC ATAATGAGAGAATGTTGATTTTGATGATGCATTACTTGAGCTTAGGTTTGAAATAGATAAGGAGGTTGTTCAATGATAAA AATATTTAGTGCTGATTTTGTTAGTTGGCTTTTAGTTCTCTAAGTGTAGTTTTTAAGCTGGTTTTTGTTGCCTTTTATCA GGGTGAATTATGCTTTCCCCTTGGTATGTAGGCTCTTAGTTTTATCTTGACTTAATTCCAGTTTGGGCCCCTGTTGTTTC ACAAATGTGTGGTCTGCACCCCCGTGTTTAAAATGTGCTGTCAAGCTCCATGATGTCTCTAAAACGGGTGATCCAAGCCC TTCCGTCTGTTTCCGCCAGTTGACCGAACGGAGTTCGCCACCAG
CDS sequence (LotjaGi2g1v0063000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGCGGCTTGCACTGCGAAGAGCTTCTTCAGCGGCCACCGCGTACACCCTTAATGGCGGTGGCCGGTTAATTTCCGG TTCGGCGTCGAGTCCGAGCCTTTCGATATGGAGGCGGAGGAAGGAGTTGGGGAAAGAAGGCCTCGTCGTCGCTAAAGAGC TCAAGAGGCTCCAATCCGACCCGGTCCGCCTCGACCGGTTCATCCGGTCCAGCGTTTCTCGCTTACTCAAGTCAGACCTT GTTGCCGTCCTCGCTGAGTTTCAGAGACAGGACAATGTCTTTCTCTCCATCAAGTTGTATGATATTGTGCGCAAAGAAAT TTGGTACAGGCCGGACATGTTCTTCTACAGAGACATGCTTATGATGCTTGCAAGAAACAGAAGGGTTGAAGAAGCAAAGA GAGTCTGGAATGATTTGAAAGGGGAGGAGGTTTTATTTGATCAGCATACATTTGGAGACATCATTAGATCTTTTCTAGAC AGTGGATTGCCCTCAGAGGCAATGGAAATATATGAAGAAATGAGACAATCCCCTGAGCCCCCTCTGTCGTTGCCTTTTCG CGTGATATTGAAAGGGCTCATTCCATATCCAGAACTAAGAGAAAAGGTAAAAGATGACTTTTTAGAGGTTTTCCCTGATA TGATCATCTATGACCCACCCGAGGACTTGTTCGATGATGATGAAAAACCCAAGGATGAAGCTAATGAGAATGTTACTGCT TGA
Protein sequence (LotjaGi2g1v0063000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRLALRRASSAATAYTLNGGGRLISGSASSPSLSIWRRRKELGKEGLVVAKELKRLQSDPVRLDRFIRSSVSRLLKSDL VAVLAEFQRQDNVFLSIKLYDIVRKEIWYRPDMFFYRDMLMMLARNRRVEEAKRVWNDLKGEEVLFDQHTFGDIIRSFLD SGLPSEAMEIYEEMRQSPEPPLSLPFRVILKGLIPYPELREKVKDDFLEVFPDMIIYDPPEDLFDDDEKPKDEANENVTA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 230 | 220 | 4.1E-128 | – | |
| PANTHER | 11 | 230 | 220 | 4.1E-128 | – | |
| Gene3D | 41 | 227 | 187 | 5.2E-37 | ||
| ProSiteProfiles | 112 | 146 | 35 | 8.035 | ||
| Pfam | 116 | 142 | 27 | 0.081 | ||
| ProSiteProfiles | 147 | 181 | 35 | 10.26 | ||
| Pfam | 150 | 176 | 27 | 0.002 | ||
| MobiDBLite | 221 | 240 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0063000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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