Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0066400 |
| Transcript ID | LotjaGi2g1v0066400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Exosome complex component; TAIR: AT3G07750.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q15024|EXOS7_HUMAN Exosome complex component RRP42; TrEMBL-Plants: tr|I3T9E4|I3T9E4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0066400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:15609930..15613027) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTGGGTTTATCTCTAGGAGAACGACATTTCATCCAAGGTGGCATTGCTCAGGATCTTCGCTGTGATGGTAGAAAGAG ATTGACTTACCGGCCAATCTATGTTGAAACTGGAGTGATTCCCCAGGTAATGTATGATTTGGCACTTGCTAGGGTATCTT GATGATTTGATCCCTACCTTCTGATTTTTTCATGGTATAAATAGCCTTAATTTGTACATTTATGAACTTCATTATAGGCA CATGGTTCAGCTAGAATCAGAATGGGTGCTACAGAGGTCATTGCCAGTGTGAAGGTTTGTTAAAATGTTTTGATTGATCT TTTCTTTCATGACTCATCACATCTTTTTGTTCAATAGTTTGAATAAATTTTTCAAATCATATCAGTTCTTTTATTAACCA TGATATAGTGGCTATACAAGTGCAGGCTGAACTCGGGAAGCCAAGCTTATTACAACCTGACAAAGGGAAAGTCTCTATAT ATATTGATTGTAGTTCGACTGCAGAGCCAGCTTTTGAGGTTTGCATATTCTGTTTCTTATCTTCTTTGTTCAGTGAATTA CCCAAACGTTCTGGTTTTCTCAATATCATTGAACTTCTAAGTACTTTGAAAGTTGATAGCAAAACAAATAAATAATTTAT TGGAACTTTGCTCTTGCACCAAATGCAGTTAGGTTGCTTAGTTTATATTGATACGACAAATAAATAATCCTAAGTTTCCA AACACGTATTGATTATCGTAGTTTGTCCATGTTTCTTGGGCACCTAGGTTGAAATTCTTTTTGAACTTGAAAGACAAGGC TATACAAGAAAATGAAAGACAACGAGAAATTGTCTCAACACCCAGAACTGAGAGCCCTAGCCACTATGGCCAAATTCGAT CTGTCCCACCCACCTCCTCCCCTTAATACTACTTTCTCAGTTCCTTTCCTTTCTCTCTCAGTCTCTCTCCATTTCACTAA CTATCCTCATTTCTCTCTTCCAGGTGTCGCTTTCTTCTTCCTAGTATAAATATTTAAGTCTGAGGTTCATGACTTTTGGT CCTGCAATTGGCCCACACCCTTTTCCTTGTGTGGGTGTGGACTCGTAACATTAAATCCTTAAAAGTTTGTGATAAGGTTA AATGATGCAATGTATCAATAAGTGTTTGACTTTGACTCATCAAAGATAGTGTTTTCTGTTATGCTGGCCTAGTTATCATT CTTGATATGTGTAAGGCTCCAGTGTAATTAGTTTTATCGCTGTTCTGTATCTTTGGGATGTATATAGGGTAGAGGGGGTG ATGAGTTGTCAGCAGAACTGTCTGTAGCTCTTCAACGCAGTCTCTTGGGGGCTAAAAGTGGAGCAGGTTTGTCTTTCTCC TAGTTTCTAGATTATGCTTACTACCATATGCTATCCCTTCCAAGTTCTTACCTCTTAATTTTATGTTTATTGCTCTTGTC TCTACTGTTTATTTTTCAGGTGCTGGTATTGATCTCTCCTCGCTCGTTGTTGTCGAAGGGAAAATTTGTTGGGATCTTTA TATTGATGGACTTGTTGTTAGTTCAGATGGAAATCTGTTAGACGCACTAGGTGCTGCCATTAAGGTACGGCTTAAAATAA AATCAGAATAATAAATGATTGAACAAGATGACAATAATGGATTCTGGCGATGATGTAATTAGGATTTCAGATGCCATCCT TTGATGATGATGTCAATACTGTTTACTTTTCAAATTTTCCTGTTGGCTCATCATATTTTAGACATTGATCATATTACTAA CATGATATTTGGGCTGTTTCAAAATGTGAACTAAGACCCCCTTCTTTTATTTCATATTACTAACTTGAGTTTGCTATAAT CTTATTGCTTCATTAAACTGCTACTTTGTTAGCGTAAATAGTTAGGTCTTTGTTTTGGTAACTGTTATGCCAGCTGTCTA TAGCTGTTTGTAATCTGTTAGGTAGTTATAGTCGGTTTTAAACAGATAGTTAGTTACTTGGTCAGTTAGTATAGCTTTTC ATGTAAGCTGATCACATAGCTATTCTATATAAGAGCTATTCTCTGTAATCACTATTCGGATTATTCAATCCTGAATTCTT TCATCTTCTCTTACATGTTTTCTCTTGTCTTACTCTTCTCTTATCTTAATTAACTAAAAATATCTTAGTTCTTTCTACCT GTTATCTTTGTAATTACCCCAAATAATCCTGCAATCAGTTCAATGGAGGTTTTTTGCTCATGGATTTGTCTTTTTACCTA GATGTTGAGAATATAAAGCTATTTTTAGAATGAAGTGAAAAGGCCCTAATCAATGCAACTGATGCCTTTCATTGTTTTAG GCTGCTTTGAGCAATACAGGTATTCCAAGAGTCCAAGTTGCTGCTGGTGCATCAGGTGATGAGAAACCAGAAGTTGAAAT AAGTGATGATGAGTTTTTACAGTTTGACACATCTGGAGTCCCTGTTATAGTTACACTGACTAAGGTAACTGTCATGAATC AACTATCCTAAAAACTTGAGGTGTTGGGTGAAGACACACAAATGATTTTATATTATATCTCTAACACAGCCACTCATACA AGAGCCCATTGCACTTTAAGTGTGGACAATGGTACTTTGTGGACATTGCACCTTGTGTTGAAACTCAATTTTTTTATTAG AATAATGAGGGGTAACAAGGATTGAACTCTGTACCCACTTAGTCATAGAGGCTCTGATACCATGTCATAAATCTTCTATC CCAACAGCTTATGCTGTTGGGTGAAGACACATGAATAGTTTTGTAATATATTTCTCTCAATAAGACAATAACATGCTATC ATGTGTTCTCAGATTGAACTTGGTTTGTGAATTACTGAATTTTATACAATCTGATTCCTAGGTTGGGAGGCACTATATTG TGGATGCCACATCAGAAGAGGAATCACAAATGAGCTCTGCTGTTTCCATATCTGTTAATAGGCAAGGTCACATCTGTGGT GTCACCAAACGAGGAGGTGCGGGGCTGGATCCAAGTATTGTTCTTGATATGATATCTGTAGCTAAGCATGTGAGCGAGCA GTTAATAAACAAACTGGATTCAGAAATAGCTTCTGCTGAAGCTGAAGATGAGTCATGA
CDS sequence (LotjaGi2g1v0066400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGGTTTATCTCTAGGAGAACGACATTTCATCCAAGGTGGCATTGCTCAGGATCTTCGCTGTGATGGTAGAAAGAG ATTGACTTACCGGCCAATCTATGTTGAAACTGGAGTGATTCCCCAGGCACATGGTTCAGCTAGAATCAGAATGGGTGCTA CAGAGGTCATTGCCAGTGTGAAGGCTGAACTCGGGAAGCCAAGCTTATTACAACCTGACAAAGGGAAAGTCTCTATATAT ATTGATTGTAGTTCGACTGCAGAGCCAGCTTTTGAGGGTAGAGGGGGTGATGAGTTGTCAGCAGAACTGTCTGTAGCTCT TCAACGCAGTCTCTTGGGGGCTAAAAGTGGAGCAGGTGCTGGTATTGATCTCTCCTCGCTCGTTGTTGTCGAAGGGAAAA TTTGTTGGGATCTTTATATTGATGGACTTGTTGTTAGTTCAGATGGAAATCTGTTAGACGCACTAGGTGCTGCCATTAAG GCTGCTTTGAGCAATACAGGTATTCCAAGAGTCCAAGTTGCTGCTGGTGCATCAGGTGATGAGAAACCAGAAGTTGAAAT AAGTGATGATGAGTTTTTACAGTTTGACACATCTGGAGTCCCTGTTATAGTTACACTGACTAAGGTTGGGAGGCACTATA TTGTGGATGCCACATCAGAAGAGGAATCACAAATGAGCTCTGCTGTTTCCATATCTGTTAATAGGCAAGGTCACATCTGT GGTGTCACCAAACGAGGAGGTGCGGGGCTGGATCCAAGTATTGTTCTTGATATGATATCTGTAGCTAAGCATGTGAGCGA GCAGTTAATAAACAAACTGGATTCAGAAATAGCTTCTGCTGAAGCTGAAGATGAGTCATGA
Protein sequence (LotjaGi2g1v0066400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGLSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASVKAELGKPSLLQPDKGKVSIY IDCSSTAEPAFEGRGGDELSAELSVALQRSLLGAKSGAGAGIDLSSLVVVEGKICWDLYIDGLVVSSDGNLLDALGAAIK AALSNTGIPRVQVAAGASGDEKPEVEISDDEFLQFDTSGVPVIVTLTKVGRHYIVDATSEEESQMSSAVSISVNRQGHIC GVTKRGGAGLDPSIVLDMISVAKHVSEQLINKLDSEIASAEAEDES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 281 | 281 | 3.3E-117 | – | |
| PANTHER | 1 | 281 | 281 | 3.3E-117 | – | |
| Gene3D | 3 | 286 | 284 | 4.3E-84 | ||
| CDD | 4 | 278 | 275 | 1.94903E-125 | – | |
| SUPERFAMILY | 4 | 223 | 220 | 9.62E-45 | ||
| Pfam | 30 | 169 | 140 | 2.9E-27 | ||
| SUPERFAMILY | 196 | 283 | 88 | 4.23E-23 | ||
| Pfam | 200 | 263 | 64 | 1.3E-9 | ||
| Coils | 263 | 283 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0066400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…