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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0070200 |
| Transcript ID | LotjaGi2g1v0070200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nudix hydrolase-like protein; TAIR: AT2G01670.1 nudix hydrolase homolog 17; Swiss-Prot: sp|Q9ZU95|NUD17_ARATH Nudix hydrolase 17, mitochondrial; TrEMBL-Plants: tr|A0A151QZU3|A0A151QZU3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0070200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:17148166..17150262) extracted from Lotus japonicus Gifu genome v1.2.
CACGTCCTTTCCAACGGTTTCACAAAAGGCAACTTTTCTCTCTCTCTCTCTCTATATATATAGCTAACTTTTGACCACTT TCTCTACAACTTTTCTCTTTGGTTCTATTTGCTTCCACAAAACCAATCGATCATTTAATTGTAATAGCTAGCTAGATCCT CTCTTTAACTTTCCTTGTCCTTTCTGTGGGTTGCTCTTGTTTTCTTCATTTGTCTTTTAAAAGTGAAAGGTTAAGTGTTT TAAGAGATCATGGTTTGCTTGGTATCACGCTCCGGAAGGGAGTTGCAGAGGTACAACAGTGCTGGCGGCCGCCAAGTTGT AGGGTGAGTACTTCATTTTAAGGTGCTCCTGCTCCTGCATATCTGTTTTTGAGGCATTGCATGTTTAATATATAACATCT TCGTATAAGTTTTTCTTTTACCAAAATCAATTGATCTGACACACTGAAGCTACTTACAGAAGTTTTTTTCAAGAATTAAT CATGTCTTTACAGAATCAATTCTGACACTTGAAAGCTACTTGTAGAAATTTCTGTCCACATGCATTGACTTTATTTCATA TTTAGTACATAAGGAGAATGGATTCTAGACGAAGCTACTCCTAGTTTGTGGTAGCAGCATTGATTTTGGGAAACCTGAAG TTGAATCCAAACATCTTCTAAAATTTTAACTTACACTGAATATTTACACTTGCATATTTGCTCAATTTGCATTGTTGATC TTAAGCCGTTCAAATCCCCTGCTTAGTGCATTTATTGTTGTATTCATTAATGCATATCCTGCTTTCCTTGACTTGTACTT AATTATTACATTGTCAAATTGTGCAGGTGCATACCTTACAGATATAAAGAAGATATTGAAGGTAATGTAAGCAATAAATT GGAGGTGCTTATGGTTAGTTCACAAAAAGGTCAAGCTTTGATGTTTCCCAAGGTATACTTTTGATCACTTCTTGCACATT AATTAGTAGAGTTTTTTTCGGCACATTAGTAGAGTTTAATTAACTAGAAGAAAAACTTCTTTGGTTTCTTGGTCAATTAT TCATTCAAAATTAACTTCCTATTTGTTTGAAACAGGGTGGTTGGGAAGTTGATGAATCAGCAGAAGAAGCAGCTTGCAGG GAAGCACTTGAAGAAGCAGGAGTTACAGGAACCATTGAGGTATTGAAATTTTAAAATTTTTGAAATACAATAGGCATTTC TAATTTACTTTAATTTATTGTATTCTTCCCTCTACTTCTTTCTAATTCTATGACTGCCAAAATATTTTAAAACACTGAAA TTTTGGTTTAATTTCTTATGGCAGGATGGATTGGGCCAATGGAATTTCATTAGCAAAAGATATGGTACATACTATGAAGG GCACATGTTTCCCTTACTTGTGAAGGAGCAACTTGACCTATGGCCAGAGAAAACTCTACGGAGAAGAATATGGGTATATA TGTTTGACAGTTGTTATTAATGTGTTTCTGAATTAGTATATGCTAGCTAATATTATGTCCACATTGACTAGAAATAATAT GATAAAATCTAGTTTTTGGGTAGAGTTTGAGAAGTATATGCTAATATTATGTCCTGACTTTTCCTTTGCAGATGAACGTG GCTGAAGCTCGAGAAGTTTGTCACCATTGGTGGATGAAAGAAGCATTAGATATACTTGTTAGACGACTAACTCCACAGCA ATATACGAACTTATAGAATCAATTGTTGGCTACTTGTTAGTTGTTACTATAGATAGAAAATATATGGTCAATATTATGTA TCCTGGACCGGAATGGGCGGCCTCCCTCATCATGGGCGATTTGATCATCTCTTCACCACCTTTGGCGATCTCATCACTAT GAGCGATTTGACGTGCCTTGAGCGAGCTGATTTGTTTTATCACGTGTCCTAGGCTCCTAGCAATTATAAATATTGTAATT TTTACGGTTTAAGATATTTTATTAAGTAACGTTGTTACGCACTTTCCCTGAATCATAGCACTTGCTAGCTAATGTAATAA GGGAGCCATTAGAATCAATGATTAGAATACAGAGAAGAATAAGGTTATGTTTTGAGAGGCTTTGCAATTTGCGTGTTCAC TTGAATATTGAAAAAAT
CDS sequence (LotjaGi2g1v0070200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTGCTTGGTATCACGCTCCGGAAGGGAGTTGCAGAGGTACAACAGTGCTGGCGGCCGCCAAGTTGTAGGGTGCAT ACCTTACAGATATAAAGAAGATATTGAAGGTAATGTAAGCAATAAATTGGAGGTGCTTATGGTTAGTTCACAAAAAGGTC AAGCTTTGATGTTTCCCAAGGGTGGTTGGGAAGTTGATGAATCAGCAGAAGAAGCAGCTTGCAGGGAAGCACTTGAAGAA GCAGGAGTTACAGGAACCATTGAGGATGGATTGGGCCAATGGAATTTCATTAGCAAAAGATATGGTACATACTATGAAGG GCACATGTTTCCCTTACTTGTGAAGGAGCAACTTGACCTATGGCCAGAGAAAACTCTACGGAGAAGAATATGGATGAACG TGGCTGAAGCTCGAGAAGTTTGTCACCATTGGTGGATGAAAGAAGCATTAGATATACTTGTTAGACGACTAACTCCACAG CAATATACGAACTTATAG
Protein sequence (LotjaGi2g1v0070200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVCLVSRSGRELQRYNSAGGRQVVGCIPYRYKEDIEGNVSNKLEVLMVSSQKGQALMFPKGGWEVDESAEEAACREALEE AGVTGTIEDGLGQWNFISKRYGTYYEGHMFPLLVKEQLDLWPEKTLRRRIWMNVAEAREVCHHWWMKEALDILVRRLTPQ QYTNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 159 | 159 | 1.4E-78 | – | |
| PANTHER | 1 | 159 | 159 | 1.4E-78 | – | |
| Gene3D | 12 | 155 | 144 | 6.3E-29 | – | |
| ProSiteProfiles | 19 | 154 | 136 | 14.548 | ||
| SUPERFAMILY | 20 | 156 | 137 | 8.67E-23 | ||
| CDD | 22 | 147 | 126 | 1.97007E-45 | – | |
| Pfam | 44 | 148 | 105 | 4.7E-10 | ||
| ProSitePatterns | 61 | 82 | 22 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi2g1v0070200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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