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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0079900 |
| Transcript ID | LotjaGi2g1v0079900.4 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT3G27400.2 Pectin lyase-like superfamily protein; Swiss-Prot: sp|P24396|PLY18_SOLLC Probable pectate lyase P18; TrEMBL-Plants: tr|V7C0A3|V7C0A3_PHAVU Pectate lyase; Found in the gene: LotjaGi2g1v0079900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:21343233..21345951) extracted from Lotus japonicus Gifu genome v1.2.
CCCTTTGTGCTTTAACCTGATAAAGTTGTCTAAATCATCCAAAATTTATGATAAAATATATCATCTAATATTTATGTTGA GTGATTTAGATAACTTGACTAATAATTTTGTTTTTATTTTATCTTGAGATGTAAAAAATAAATGGATTATTTTTCACATA TAGTATGAAGGGTACTTACTTTAAATAAATGAGATTGAGTGTCTTGCACTATGGGTCCAAAAAAGAATATGTTCTTTCGA AAAAATTGCATATGGTCACACATTTTCAATTTCATATTGCAGAAGCATCAACGCCTCAAGAAGAAACTTGGGTTATTTAT CATGTGGAACCGGTAATCCCATTGATGACTGCTGGCGATGTGACCCTAATTGGGAGAACAACCGGCAAAGGCTAGCAGAT TGCGCCATTGGGTTTGGCAAGGATGCCTTGGGAGGAAAAAATGGTCAAATCTACGTCGTCACTGACTCCGGTGACGACGA CCCCGTGAACCCGAGGCCAGGGACACTGAGGTACGGCGCCATACAAGACGAGCCACTATGGATCATCTTTAAGAGAGACA TGGTGATTAACTTGAAACAAGAGCTTCTAGTGAACTCCTTCAAGACAATTGATGGAAGGGGTGCTAGTGTTCACATTGCT GGTGGGGGATGCATTACCATTCATTATGTGAGCAATATCATCATCCATGGGATTAACATCCATGATTGCAAGCCCACTGG GAACACCGATATAAGAGATTCCCCACACCATTCTGGGTTTTGGACTGTGTCAGATGGAGATGGTATTTCTATATTTAACT CAAAGCATGTGTGGGTTGATCATTGCTCTTTATCTAATTGCCGTGATGGTCTCATTGATGCCATCCATGGATCCACGGCT ATCACTATCTCCAATAACTACATGACCCATCATGACAAAGTCATGCTTTTGGGACACAGTGACTCTTACACACAAGACAA GGACATGCAGGCCACTATAGCCTTTAATCATTTTGGTGAAGGCCTTGTCCAAAGAATGCCAAGGTACATATACATTCTAA GGCCATCACTTTTTTCTTTAGTAGTGATACCTTGACATTCAAACACCGTAGAGATTCATTTATAATTAACTACTTTGGGT TTATTGAATGTCAATATTATACATAGGTGTAAAAATTTATGAGTTTCCTTTGCTTTAATATTTGAATATAATATGATATT AATCTTAATTATTTAAATATTATTTGTATATATGTTCACATTACTTTTTCTTACTGCTTTAATATTTGAATATAATATGA TATTAATCTTAATTATTTAAATATTATTTGTATATATGTTCACATTACTTTTTCTTACGAATAATGATATTTGATACCTC AAATGACTTTCACACTTTTTACACCTCATTCATGTGAATATGACAGAAAGACAAATAGAAAGAGACATATTTCTATCCTT AAAGTTTGATGTCCCAGAGTGAAATCATACAAAATTATTTTGTTAACATCTCTACACCTCACACCTCTTACTCAAAATCA TATGAATATTGAGATTGAATTGAAGCTTGGGCAATAAAAAAATGATCTGTGCTTAAATCTAAACAATTTTGTTATAAAGA CTCTATACCACATCATAAATTAAATATCTCAAAAATTGAAATTGTAAATTGAAAATAAGCTGATGATTTTAGGCTAAATT GCTATTAAAGCTTACCATTTCTAGCTCCAATTAATTTTAGAAAATGTACTGAAATCTTCTCTTTCATTTTGTTTTTAAAA GTGAAAACAAATATATACGAGAAACTCTTGAGAACAAAGTTCCCCCAAGTGAACTATGAAAAGACAACAACAATAAGAAG AAAAGACAACAGAAAGTATAGCAAAAGCAGAAAGCAAAACAGAAAACACAATAGAAACAGTAGCGAAAACAGAGTCAGGC CGGGGCGGGCAATAGCAAAACGAAGAGCTAGGATGGCAGCTGCAACAGCAGGGCACAGTGAAGCTCTCGAGCCACAAAGG ATCATAGCCAATCGAGATATAACCTATATGAAGTTCTTCAAAGGAGAATAATATACCAGGCCAAATGGCCAATGAACATA AAGAAGCACACCAGTGGGATAAGAATTGCAGCTCTATCATCCTATAGTGTTGTCCACCACCCATTACACAGTAGCAGCAA CACAAAATCATGAGTAAAAACAGAGAAAAGCATGCAGGGTACCAATAATAATAATAGAGTTAGCCGAGTGTTAATATTAA TGCCATAAAAATAATCCTTAGTAAAGTCAATGCAATGTCCCTAATAAAATCAGGGCGGTTAATTTTTTATTAAAAGAATA AGAAACCATCATTTGAATGCTCTTATATGTACATGCAGGTGTAGACATGGATACTTTCATGTGGTGAACAATGACTACAC ACACTGGGAAATGTATGCAATTGGTGGGAGTGCTAACCCTACTATCAACAGCCAGGGGAACAGGTTTCTTGCACCAGATA ACAGGTTCAGCAAAGAGGTAACAAAGCATGAGGATGCACCGGATAGTGAATGGAAGAGCTGGAACTGGAGATCAGAAGGG GACTTGTTCTTGAATGGAGCATTCTTCAGGTCATCTGGTGCTGGTGCTTCTTCTATGTATGCAAGGGCATCAAGTCTCAG TGCAAGACCATCTTCTCTTGTTGGCTCCATCACTGTCACTGCTGGTACACTCAACTGCAGGAAGGGCTCTCGCTGCTGA
CDS sequence (LotjaGi2g1v0079900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGATTAACTTGAAACAAGAGCTTCTAGTGAACTCCTTCAAGACAATTGATGGAAGGGGTGCTAGTGTTCACATTGC TGGTGGGGGATGCATTACCATTCATTATGTGAGCAATATCATCATCCATGGGATTAACATCCATGATTGCAAGCCCACTG GGAACACCGATATAAGAGATTCCCCACACCATTCTGGGTTTTGGACTGTGTCAGATGGAGATGGTATTTCTATATTTAAC TCAAAGCATGTGTGGGTTGATCATTGCTCTTTATCTAATTGCCGTGATGGTCTCATTGATGCCATCCATGGATCCACGGC TATCACTATCTCCAATAACTACATGACCCATCATGACAAAGTCATGCTTTTGGGACACAGTGACTCTTACACACAAGACA AGGACATGCAGGCCACTATAGCCTTTAATCATTTTGGTGAAGGCCTTGTCCAAAGAATGCCAAGGTGTAGACATGGATAC TTTCATGTGGTGAACAATGACTACACACACTGGGAAATGTATGCAATTGGTGGGAGTGCTAACCCTACTATCAACAGCCA GGGGAACAGGTTTCTTGCACCAGATAACAGGTTCAGCAAAGAGGTAACAAAGCATGAGGATGCACCGGATAGTGAATGGA AGAGCTGGAACTGGAGATCAGAAGGGGACTTGTTCTTGAATGGAGCATTCTTCAGGTCATCTGGTGCTGGTGCTTCTTCT ATGTATGCAAGGGCATCAAGTCTCAGTGCAAGACCATCTTCTCTTGTTGGCTCCATCACTGTCACTGCTGGTACACTCAA CTGCAGGAAGGGCTCTCGCTGCTGA
Protein sequence (LotjaGi2g1v0079900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVINLKQELLVNSFKTIDGRGASVHIAGGGCITIHYVSNIIIHGINIHDCKPTGNTDIRDSPHHSGFWTVSDGDGISIFN SKHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQATIAFNHFGEGLVQRMPRCRHGY FHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDAPDSEWKSWNWRSEGDLFLNGAFFRSSGAGASS MYARASSLSARPSSLVGSITVTAGTLNCRKGSRC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 274 | 274 | 1.5E-182 | – | |
| Gene3D | 1 | 267 | 267 | 2.3E-90 | ||
| SUPERFAMILY | 1 | 274 | 274 | 1.1E-79 | ||
| SMART | 1 | 197 | 197 | 4.8E-105 | ||
| PANTHER | 1 | 274 | 274 | 1.5E-182 | – | |
| ProSiteProfiles | 1 | 31 | 31 | 5.0 | – | |
| Pfam | 7 | 191 | 185 | 4.5E-22 | ||
| PRINTS | 8 | 24 | 17 | 7.9E-61 | ||
| PRINTS | 72 | 93 | 22 | 7.9E-61 | ||
| PRINTS | 152 | 171 | 20 | 7.9E-61 | ||
| PRINTS | 174 | 193 | 20 | 7.9E-61 | ||
| PRINTS | 216 | 240 | 25 | 7.9E-61 | ||
| PRINTS | 245 | 268 | 24 | 7.9E-61 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0079900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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