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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0079900 |
| Transcript ID | LotjaGi2g1v0079900.5 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|A0A0L9VMG9|A0A0L9VMG9_PHAAN Pectate lyase; Found in the gene: LotjaGi2g1v0079900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:21343233..21346410) extracted from Lotus japonicus Gifu genome v1.2.
ATGACTCCTCTTTCATGCTTCCTTGTTCTTTTCTCCCTTTCTCTTCTAACACCAAATTTTGTTTCCTCCTCTGCAGTTCG AGATCCTGAGTTGGTTGTCCAAGAAGTACAGAGGTAATAACTATAGAAGCTTTTACCTCTTAATTTGTATTATGTTCGCT AGCTTATTCTACCTACATTATTCATTGATTAGATAATGAAATTAACCTTAAAATCCAGCAAACTATATGCATGTTACCTA TCAAAATGTGAGATATTTGAAAGAGTCATTTTGTTTCATTCATGATAATATACATATATATATACCTGAAGATACTTTAT GCACCATTTTCTATTTCTTCCTCTTCTTTTGTATAAATGCAAATGTGAGTTTAGAGTTTTACTTAGATGACAAATTCAAC AAAATCATATATTTAAGAACTTTTCTCGGGTAAGCAATAAATTACAGGGAGTTTTCGTACCCTTTGTGCTTTAACCTGAT AAAGTTGTCTAAATCATCCAAAATTTATGATAAAATATATCATCTAATATTTATGTTGAGTGATTTAGATAACTTGACTA ATAATTTTGTTTTTATTTTATCTTGAGATGTAAAAAATAAATGGATTATTTTTCACATATAGTATGAAGGGTACTTACTT TAAATAAATGAGATTGAGTGTCTTGCACTATGGGTCCAAAAAAGAATATGTTCTTTCGAAAAAATTGCATATGGTCACAC ATTTTCAATTTCATATTGCAGAAGCATCAACGCCTCAAGAAGAAACTTGGGTTATTTATCATGTGGAACCGGTAATCCCA TTGATGACTGCTGGCGATGTGACCCTAATTGGGAGAACAACCGGCAAAGGCTAGCAGATTGCGCCATTGGGTTTGGCAAG GATGCCTTGGGAGGAAAAAATGGTCAAATCTACGTCGTCACTGACTCCGGTGACGACGACCCCGTGAACCCGAGGCCAGG GACACTGAGGTACGGCGCCATACAAGACGAGCCACTATGGATCATCTTTAAGAGAGACATGGTGATTAACTTGAAACAAG AGCTTCTAGTGAACTCCTTCAAGACAATTGATGGAAGGGGTGCTAGTGTTCACATTGCTGGTGGGGGATGCATTACCATT CATTATGTGAGCAATATCATCATCCATGGGATTAACATCCATGATTGCAAGCCCACTGGGAACACCGATATAAGAGATTC CCCACACCATTCTGGGTTTTGGACTGTGTCAGATGGAGATGGTATTTCTATATTTAACTCAAAGCATGTGTGGGTTGATC ATTGCTCTTTATCTAATTGCCGTGATGGTCTCATTGATGCCATCCATGGATCCACGGCTATCACTATCTCCAATAACTAC ATGACCCATCATGACAAAGTCATGCTTTTGGGACACAGTGACTCTTACACACAAGACAAGGACATGCAGGCCACTATAGC CTTTAATCATTTTGGTGAAGGCCTTGTCCAAAGAATGCCAAGGTACATATACATTCTAAGGCCATCACTTTTTTCTTTAG TAGTGATACCTTGACATTCAAACACCGTAGAGATTCATTTATAATTAACTACTTTGGGTTTATTGAATGTCAATATTATA CATAGGTGTAAAAATTTATGAGTTTCCTTTGCTTTAATATTTGAATATAATATGATATTAATCTTAATTATTTAAATATT ATTTGTATATATGTTCACATTACTTTTTCTTACTGCTTTAATATTTGAATATAATATGATATTAATCTTAATTATTTAAA TATTATTTGTATATATGTTCACATTACTTTTTCTTACGAATAATGATATTTGATACCTCAAATGACTTTCACACTTTTTA CACCTCATTCATGTGAATATGACAGAAAGACAAATAGAAAGAGACATATTTCTATCCTTAAAGTTTGATGTCCCAGAGTG AAATCATACAAAATTATTTTGTTAACATCTCTACACCTCACACCTCTTACTCAAAATCATATGAATATTGAGATTGAATT GAAGCTTGGGCAATAAAAAAATGATCTGTGCTTAAATCTAAACAATTTTGTTATAAAGACTCTATACCACATCATAAATT AAATATCTCAAAAATTGAAATTGTAAATTGAAAATAAGCTGATGATTTTAGGCTAAATTGCTATTAAAGCTTACCATTTC TAGCTCCAATTAATTTTAGAAAATGTACTGAAATCTTCTCTTTCATTTTGTTTTTAAAAGTGAAAACAAATATATACGAG AAACTCTTGAGAACAAAGTTCCCCCAAGTGAACTATGAAAAGACAACAACAATAAGAAGAAAAGACAACAGAAAGTATAG CAAAAGCAGAAAGCAAAACAGAAAACACAATAGAAACAGTAGCGAAAACAGAGTCAGGCCGGGGCGGGCAATAGCAAAAC GAAGAGCTAGGATGGCAGCTGCAACAGCAGGGCACAGTGAAGCTCTCGAGCCACAAAGGATCATAGCCAATCGAGATATA ACCTATATGAAGTTCTTCAAAGGAGAATAATATACCAGGCCAAATGGCCAATGAACATAAAGAAGCACACCAGTGGGATA AGAATTGCAGCTCTATCATCCTATAGTGTTGTCCACCACCCATTACACAGTAGCAGCAACACAAAATCATGAGTAAAAAC AGAGAAAAGCATGCAGGGTACCAATAATAATAATAGAGTTAGCCGAGTGTTAATATTAATGCCATAAAAATAATCCTTAG TAAAGTCAATGCAATGTCCCTAATAAAATCAGGGCGGTTAATTTTTTATTAAAAGAATAAGAAACCATCATTTGAATGCT CTTATATGTACATGCAGGTGTAGACATGGATACTTTCATGTGGTGAACAATGACTACACACACTGGGAAATGTATGCAAT TGGTGGGAGTGCTAACCCTACTATCAACAGCCAGGGGAACAGGTTTCTTGCACCAGATAACAGGTTCAGCAAAGAGGTAA CAAAGCATGAGGATGCACCGGATAGTGAATGGAAGAGCTGGAACTGGAGATCAGAAGGGGACTTGTTCTTGAATGGAGCA TTCTTCAGGTCATCTGGTGCTGGTGCTTCTTCTATGTATGCAAGGGCATCAAGTCTCAGTGCAAGACCATCTTCTCTTGT TGGCTCCATCACTGTCACTGCTGGTACACTCAACTGCAGGAAGGGCTCTCGCTGCTGA
CDS sequence (LotjaGi2g1v0079900.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCCTCTTTCATGCTTCCTTGTTCTTTTCTCCCTTTCTCTTCTAACACCAAATTTTGTTTCCTCCTCTGCAGTTCG AGATCCTGAGTTGGTTGTCCAAGAAGTACAGAGAAGCATCAACGCCTCAAGAAGAAACTTGGGTTATTTATCATGTGGAA CCGGTAATCCCATTGATGACTGCTGGCGATGTGACCCTAATTGGGAGAACAACCGGCAAAGGCTAGCAGATTGCGCCATT GGGTTTGGCAAGGATGCCTTGGGAGGAAAAAATGGTCAAATCTACGTCGTCACTGACTCCGGTGACGACGACCCCGTGAA CCCGAGGCCAGGGACACTGAGGTACGGCGCCATACAAGACGAGCCACTATGGATCATCTTTAAGAGAGACATGGTGATTA ACTTGAAACAAGAGCTTCTAGTGAACTCCTTCAAGACAATTGATGGAAGGGGTGCTAGTGTTCACATTGCTGGTGGGGGA TGCATTACCATTCATTATGTGAGCAATATCATCATCCATGGGATTAACATCCATGATTGCAAGCCCACTGGGAACACCGA TATAAGAGATTCCCCACACCATTCTGGGTTTTGGACTGTGTCAGATGGAGATGGTATTTCTATATTTAACTCAAAGCATG TGTGGGTTGATCATTGCTCTTTATCTAATTGCCGTGATGGTCTCATTGATGCCATCCATGGATCCACGGCTATCACTATC TCCAATAACTACATGACCCATCATGACAAAGTCATGCTTTTGGGACACAGTGACTCTTACACACAAGACAAGGACATGCA GGCCACTATAGCCTTTAATCATTTTGGTGAAGGCCTTGTCCAAAGAATGCCAAGGTGTAGACATGGATACTTTCATGTGG TGAACAATGACTACACACACTGGGAAATGTATGCAATTGGTGGGAGTGCTAACCCTACTATCAACAGCCAGGGGAACAGG TTTCTTGCACCAGATAACAGGTTCAGCAAAGAGGTAACAAAGCATGAGGATGCACCGGATAGTGAATGGAAGAGCTGGAA CTGGAGATCAGAAGGGGACTTGTTCTTGAATGGAGCATTCTTCAGGTCATCTGGTGCTGGTGCTTCTTCTATGTATGCAA GGGCATCAAGTCTCAGTGCAAGACCATCTTCTCTTGTTGGCTCCATCACTGTCACTGCTGGTACACTCAACTGCAGGAAG GGCTCTCGCTGCTGA
Protein sequence (LotjaGi2g1v0079900.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTPLSCFLVLFSLSLLTPNFVSSSAVRDPELVVQEVQRSINASRRNLGYLSCGTGNPIDDCWRCDPNWENNRQRLADCAI GFGKDALGGKNGQIYVVTDSGDDDPVNPRPGTLRYGAIQDEPLWIIFKRDMVINLKQELLVNSFKTIDGRGASVHIAGGG CITIHYVSNIIIHGINIHDCKPTGNTDIRDSPHHSGFWTVSDGDGISIFNSKHVWVDHCSLSNCRDGLIDAIHGSTAITI SNNYMTHHDKVMLLGHSDSYTQDKDMQATIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNR FLAPDNRFSKEVTKHEDAPDSEWKSWNWRSEGDLFLNGAFFRSSGAGASSMYARASSLSARPSSLVGSITVTAGTLNCRK GSRC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| PANTHER | 5 | 404 | 400 | 1.6E-259 | – | |
| PANTHER | 5 | 404 | 400 | 1.6E-259 | – | |
| Phobius | 16 | 23 | 8 | - | – | |
| Phobius | 24 | 404 | 381 | - | – | |
| SUPERFAMILY | 39 | 398 | 360 | 1.65E-102 | ||
| Gene3D | 55 | 397 | 343 | 1.1E-125 | ||
| PRINTS | 78 | 95 | 18 | 5.1E-86 | ||
| PRINTS | 102 | 127 | 26 | 5.1E-86 | ||
| SMART | 130 | 327 | 198 | 1.7E-106 | ||
| Pfam | 137 | 321 | 185 | 1.3E-21 | ||
| PRINTS | 138 | 154 | 17 | 5.1E-86 | ||
| PRINTS | 202 | 223 | 22 | 5.1E-86 | ||
| PRINTS | 282 | 301 | 20 | 5.1E-86 | ||
| PRINTS | 304 | 323 | 20 | 5.1E-86 | ||
| PRINTS | 346 | 370 | 25 | 5.1E-86 | ||
| PRINTS | 375 | 398 | 24 | 5.1E-86 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0079900.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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