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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0079900 |
| Transcript ID | LotjaGi2g1v0079900.6 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|V7C0A3|V7C0A3_PHAVU Pectate lyase; Found in the gene: LotjaGi2g1v0079900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:21343233..21346413) extracted from Lotus japonicus Gifu genome v1.2.
AAAATGACTCCTCTTTCATGCTTCCTTGTTCTTTTCTCCCTTTCTCTTCTAACACCAAATTTTGTTTCCTCCTCTGCAGT TCGAGATCCTGAGTTGGTTGTCCAAGAAGTACAGAGGTAATAACTATAGAAGCTTTTACCTCTTAATTTGTATTATGTTC GCTAGCTTATTCTACCTACATTATTCATTGATTAGATAATGAAATTAACCTTAAAATCCAGCAAACTATATGCATGTTAC CTATCAAAATGTGAGATATTTGAAAGAGTCATTTTGTTTCATTCATGATAATATACATATATATATACCTGAAGATACTT TATGCACCATTTTCTATTTCTTCCTCTTCTTTTGTATAAATGCAAATGTGAGTTTAGAGTTTTACTTAGATGACAAATTC AACAAAATCATATATTTAAGAACTTTTCTCGGGTAAGCAATAAATTACAGGGAGTTTTCGTACCCTTTGTGCTTTAACCT GATAAAGTTGTCTAAATCATCCAAAATTTATGATAAAATATATCATCTAATATTTATGTTGAGTGATTTAGATAACTTGA CTAATAATTTTGTTTTTATTTTATCTTGAGATGTAAAAAATAAATGGATTATTTTTCACATATAGTATGAAGGGTACTTA CTTTAAATAAATGAGATTGAGTGTCTTGCACTATGGGTCCAAAAAAGAATATGTTCTTTCGAAAAAATTGCATATGGTCA CACATTTTCAATTTCATATTGCAGAAGCATCAACGCCTCAAGAAGAAACTTGGGTTATTTATCATGTGGAACCGGTAATC CCATTGATGACTGCTGGCGATGTGACCCTAATTGGGAGAACAACCGGCAAAGGCTAGCAGATTGCGCCATTGGGTTTGGC AAGGATGCCTTGGGAGGAAAAAATGGTCAAATCTACGTCGTCACTGACTCCGGTGACGACGACCCCGTGAACCCGAGGCC AGGGACACTGAGGTACGGCGCCATACAAGACGAGCCACTATGGATCATCTTTAAGAGAGACATGGTGATTAACTTGAAAC AAGAGCTTCTAGTGAACTCCTTCAAGACAATTGATGGAAGGGGTGCTAGTGTTCACATTGCTGGTGGGGGATGCATTACC ATTCATTATGTGAGCAATATCATCATCCATGGGATTAACATCCATGATTGCAAGCCCACTGGGAACACCGATATAAGAGA TTCCCCACACCATTCTGGGTTTTGGACTGTGTCAGATGGAGATGGTATTTCTATATTTAACTCAAAGCATGTGTGGGTTG ATCATTGCTCTTTATCTAATTGCCGTGATGGTCTCATTGATGCCATCCATGGATCCACGGCTATCACTATCTCCAATAAC TACATGACCCATCATGACAAAGTCATGCTTTTGGGACACAGTGACTCTTACACACAAGACAAGGACATGCAGGCCACTAT AGCCTTTAATCATTTTGGTGAAGGCCTTGTCCAAAGAATGCCAAGGTACATATACATTCTAAGGCCATCACTTTTTTCTT TAGTAGTGATACCTTGACATTCAAACACCGTAGAGATTCATTTATAATTAACTACTTTGGGTTTATTGAATGTCAATATT ATACATAGGTGTAAAAATTTATGAGTTTCCTTTGCTTTAATATTTGAATATAATATGATATTAATCTTAATTATTTAAAT ATTATTTGTATATATGTTCACATTACTTTTTCTTACTGCTTTAATATTTGAATATAATATGATATTAATCTTAATTATTT AAATATTATTTGTATATATGTTCACATTACTTTTTCTTACGAATAATGATATTTGATACCTCAAATGACTTTCACACTTT TTACACCTCATTCATGTGAATATGACAGAAAGACAAATAGAAAGAGACATATTTCTATCCTTAAAGTTTGATGTCCCAGA GTGAAATCATACAAAATTATTTTGTTAACATCTCTACACCTCACACCTCTTACTCAAAATCATATGAATATTGAGATTGA ATTGAAGCTTGGGCAATAAAAAAATGATCTGTGCTTAAATCTAAACAATTTTGTTATAAAGACTCTATACCACATCATAA ATTAAATATCTCAAAAATTGAAATTGTAAATTGAAAATAAGCTGATGATTTTAGGCTAAATTGCTATTAAAGCTTACCAT TTCTAGCTCCAATTAATTTTAGAAAATGTACTGAAATCTTCTCTTTCATTTTGTTTTTAAAAGTGAAAACAAATATATAC GAGAAACTCTTGAGAACAAAGTTCCCCCAAGTGAACTATGAAAAGACAACAACAATAAGAAGAAAAGACAACAGAAAGTA TAGCAAAAGCAGAAAGCAAAACAGAAAACACAATAGAAACAGTAGCGAAAACAGAGTCAGGCCGGGGCGGGCAATAGCAA AACGAAGAGCTAGGATGGCAGCTGCAACAGCAGGGCACAGTGAAGCTCTCGAGCCACAAAGGATCATAGCCAATCGAGAT ATAACCTATATGAAGTTCTTCAAAGGAGAATAATATACCAGGCCAAATGGCCAATGAACATAAAGAAGCACACCAGTGGG ATAAGAATTGCAGCTCTATCATCCTATAGTGTTGTCCACCACCCATTACACAGTAGCAGCAACACAAAATCATGAGTAAA AACAGAGAAAAGCATGCAGGGTACCAATAATAATAATAGAGTTAGCCGAGTGTTAATATTAATGCCATAAAAATAATCCT TAGTAAAGTCAATGCAATGTCCCTAATAAAATCAGGGCGGTTAATTTTTTATTAAAAGAATAAGAAACCATCATTTGAAT GCTCTTATATGTACATGCAGGTGTAGACATGGATACTTTCATGTGGTGAACAATGACTACACACACTGGGAAATGTATGC AATTGGTGGGAGTGCTAACCCTACTATCAACAGCCAGGGGAACAGGTTTCTTGCACCAGATAACAGGTTCAGCAAAGAGG TAACAAAGCATGAGGATGCACCGGATAGTGAATGGAAGAGCTGGAACTGGAGATCAGAAGGGGACTTGTTCTTGAATGGA GCATTCTTCAGGTCATCTGGTGCTGGTGCTTCTTCTATGTATGCAAGGGCATCAAGTCTCAGTGCAAGACCATCTTCTCT TGTTGGCTCCATCACTGTCACTGCTGGTACACTCAACTGCAGGAAGGGCTCTCGCTGCTGA
CDS sequence (LotjaGi2g1v0079900.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCCTCTTTCATGCTTCCTTGTTCTTTTCTCCCTTTCTCTTCTAACACCAAATTTTGTTTCCTCCTCTGCAGTTCG AGATCCTGAGTTGGTTGTCCAAGAAGTACAGAGAAGCATCAACGCCTCAAGAAGAAACTTGGGTTATTTATCATGTGGAA CCGGTAATCCCATTGATGACTGCTGGCGATGTGACCCTAATTGGGAGAACAACCGGCAAAGGCTAGCAGATTGCGCCATT GGGTTTGGCAAGGATGCCTTGGGAGGAAAAAATGGTCAAATCTACGTCGTCACTGACTCCGGTGACGACGACCCCGTGAA CCCGAGGCCAGGGACACTGAGGTACGGCGCCATACAAGACGAGCCACTATGGATCATCTTTAAGAGAGACATGGTGATTA ACTTGAAACAAGAGCTTCTAGTGAACTCCTTCAAGACAATTGATGGAAGGGGTGCTAGTGTTCACATTGCTGGTGGGGGA TGCATTACCATTCATTATGTGAGCAATATCATCATCCATGGGATTAACATCCATGATTGCAAGCCCACTGGGAACACCGA TATAAGAGATTCCCCACACCATTCTGGGTTTTGGACTGTGTCAGATGGAGATGGTATTTCTATATTTAACTCAAAGCATG TGTGGGTTGATCATTGCTCTTTATCTAATTGCCGTGATGGTCTCATTGATGCCATCCATGGATCCACGGCTATCACTATC TCCAATAACTACATGACCCATCATGACAAAGTCATGCTTTTGGGACACAGTGACTCTTACACACAAGACAAGGACATGCA GGCCACTATAGCCTTTAATCATTTTGGTGAAGGCCTTGTCCAAAGAATGCCAAGTGCTAACCCTACTATCAACAGCCAGG GGAACAGGTTTCTTGCACCAGATAACAGGTTCAGCAAAGAGGTAACAAAGCATGAGGATGCACCGGATAGTGAATGGAAG AGCTGGAACTGGAGATCAGAAGGGGACTTGTTCTTGAATGGAGCATTCTTCAGGTCATCTGGTGCTGGTGCTTCTTCTAT GTATGCAAGGGCATCAAGTCTCAGTGCAAGACCATCTTCTCTTGTTGGCTCCATCACTGTCACTGCTGGTACACTCAACT GCAGGAAGGGCTCTCGCTGCTGA
Protein sequence (LotjaGi2g1v0079900.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTPLSCFLVLFSLSLLTPNFVSSSAVRDPELVVQEVQRSINASRRNLGYLSCGTGNPIDDCWRCDPNWENNRQRLADCAI GFGKDALGGKNGQIYVVTDSGDDDPVNPRPGTLRYGAIQDEPLWIIFKRDMVINLKQELLVNSFKTIDGRGASVHIAGGG CITIHYVSNIIIHGINIHDCKPTGNTDIRDSPHHSGFWTVSDGDGISIFNSKHVWVDHCSLSNCRDGLIDAIHGSTAITI SNNYMTHHDKVMLLGHSDSYTQDKDMQATIAFNHFGEGLVQRMPSANPTINSQGNRFLAPDNRFSKEVTKHEDAPDSEWK SWNWRSEGDLFLNGAFFRSSGAGASSMYARASSLSARPSSLVGSITVTAGTLNCRKGSRC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| PANTHER | 5 | 285 | 281 | 3.5E-228 | – | |
| PANTHER | 5 | 285 | 281 | 3.5E-228 | – | |
| Phobius | 16 | 23 | 8 | - | – | |
| Phobius | 24 | 380 | 357 | - | – | |
| Gene3D | 55 | 373 | 319 | 5.0E-106 | ||
| SUPERFAMILY | 56 | 371 | 316 | 1.65E-87 | ||
| PRINTS | 78 | 95 | 18 | 2.0E-49 | ||
| PRINTS | 102 | 127 | 26 | 2.0E-49 | ||
| SMART | 130 | 303 | 174 | 8.2E-73 | ||
| Pfam | 137 | 284 | 148 | 1.4E-13 | ||
| PRINTS | 138 | 154 | 17 | 2.0E-49 | ||
| PANTHER | 285 | 380 | 96 | 3.5E-228 | – | |
| PANTHER | 285 | 380 | 96 | 3.5E-228 | – | |
| PRINTS | 322 | 346 | 25 | 2.0E-49 | ||
| PRINTS | 351 | 374 | 24 | 2.0E-49 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0079900.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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