Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0079900 |
| Transcript ID | LotjaGi2g1v0079900.7 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT3G27400.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9LTZ0|PLY11_ARATH Putative pectate lyase 11; TrEMBL-Plants: tr|V7C0A3|V7C0A3_PHAVU Pectate lyase; Found in the gene: LotjaGi2g1v0079900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:21343233..21346413) extracted from Lotus japonicus Gifu genome v1.2.
AAAATGACTCCTCTTTCATGCTTCCTTGTTCTTTTCTCCCTTTCTCTTCTAACACCAAATTTTGTTTCCTCCTCTGCAGT TCGAGATCCTGAGTTGGTTGTCCAAGAAGTACAGAGGTAATAACTATAGAAGCTTTTACCTCTTAATTTGTATTATGTTC GCTAGCTTATTCTACCTACATTATTCATTGATTAGATAATGAAATTAACCTTAAAATCCAGCAAACTATATGCATGTTAC CTATCAAAATGTGAGATATTTGAAAGAGTCATTTTGTTTCATTCATGATAATATACATATATATATACCTGAAGATACTT TATGCACCATTTTCTATTTCTTCCTCTTCTTTTGTATAAATGCAAATGTGAGTTTAGAGTTTTACTTAGATGACAAATTC AACAAAATCATATATTTAAGAACTTTTCTCGGGTAAGCAATAAATTACAGGGAGTTTTCGTACCCTTTGTGCTTTAACCT GATAAAGTTGTCTAAATCATCCAAAATTTATGATAAAATATATCATCTAATATTTATGTTGAGTGATTTAGATAACTTGA CTAATAATTTTGTTTTTATTTTATCTTGAGATGTAAAAAATAAATGGATTATTTTTCACATATAGTATGAAGGGTACTTA CTTTAAATAAATGAGATTGAGTGTCTTGCACTATGGGTCCAAAAAAGAATATGTTCTTTCGAAAAAATTGCATATGGTCA CACATTTTCAATTTCATATTGCAGAAGCATCAACGCCTCAAGAAGAAACTTGGGTTATTTATCATGTGGAACCGGTAATC CCATTGATGACTGCTGGCGATGTGACCCTAATTGGGAGAACAACCGGCAAAGGCTAGCAGATTGCGCCATTGGGTTTGGC AAGGATGCCTTGGGAGGAAAAAATGGTCAAATCTACGTCGTCACTGACTCCGGTGACGACGACCCCGTGAACCCGAGGCC AGGGACACTGAGGTACGGCGCCATACAAGACGAGCCACTATGGATCATCTTTAAGAGAGACATGGTGATTAACTTGAAAC AAGAGCTTCTAGTGAACTCCTTCAAGACAATTGATGGAAGGGGTGCTAGTGTTCACATTGCTGGTGGGGGATGCATTACC ATTCATTATGTGAGCAATATCATCATCCATGGGATTAACATCCATGATTGCAAGCCCACTGGGAACACCGATATAAGAGA TTCCCCACACCATTCTGGGTTTTGGACTGTGTCAGATGGAGATGGTATTTCTATATTTAACTCAAAGCATGTGTGGGTTG ATCATTGCTCTTTATCTAATTGCCGTGATGGTCTCATTGATGCCATCCATGGATCCACGGCTATCACTATCTCCAATAAC TACATGACCCATCATGACAAAGTCATGCTTTTGGGACACAGTGACTCTTACACACAAGACAAGGACATGCAGGCCACTAT AGCCTTTAATCATTTTGGTGAAGGCCTTGTCCAAAGAATGCCAAGGTACATATACATTCTAAGGCCATCACTTTTTTCTT TAGTAGTGATACCTTGACATTCAAACACCGTAGAGATTCATTTATAATTAACTACTTTGGGTTTATTGAATGTCAATATT ATACATAGGTGTAAAAATTTATGAGTTTCCTTTGCTTTAATATTTGAATATAATATGATATTAATCTTAATTATTTAAAT ATTATTTGTATATATGTTCACATTACTTTTTCTTACTGCTTTAATATTTGAATATAATATGATATTAATCTTAATTATTT AAATATTATTTGTATATATGTTCACATTACTTTTTCTTACGAATAATGATATTTGATACCTCAAATGACTTTCACACTTT TTACACCTCATTCATGTGAATATGACAGAAAGACAAATAGAAAGAGACATATTTCTATCCTTAAAGTTTGATGTCCCAGA GTGAAATCATACAAAATTATTTTGTTAACATCTCTACACCTCACACCTCTTACTCAAAATCATATGAATATTGAGATTGA ATTGAAGCTTGGGCAATAAAAAAATGATCTGTGCTTAAATCTAAACAATTTTGTTATAAAGACTCTATACCACATCATAA ATTAAATATCTCAAAAATTGAAATTGTAAATTGAAAATAAGCTGATGATTTTAGGCTAAATTGCTATTAAAGCTTACCAT TTCTAGCTCCAATTAATTTTAGAAAATGTACTGAAATCTTCTCTTTCATTTTGTTTTTAAAAGTGAAAACAAATATATAC GAGAAACTCTTGAGAACAAAGTTCCCCCAAGTGAACTATGAAAAGACAACAACAATAAGAAGAAAAGACAACAGAAAGTA TAGCAAAAGCAGAAAGCAAAACAGAAAACACAATAGAAACAGTAGCGAAAACAGAGTCAGGCCGGGGCGGGCAATAGCAA AACGAAGAGCTAGGATGGCAGCTGCAACAGCAGGGCACAGTGAAGCTCTCGAGCCACAAAGGATCATAGCCAATCGAGAT ATAACCTATATGAAGTTCTTCAAAGGAGAATAATATACCAGGCCAAATGGCCAATGAACATAAAGAAGCACACCAGTGGG ATAAGAATTGCAGCTCTATCATCCTATAGTGTTGTCCACCACCCATTACACAGTAGCAGCAACACAAAATCATGAGTAAA AACAGAGAAAAGCATGCAGGGTACCAATAATAATAATAGAGTTAGCCGAGTGTTAATATTAATGCCATAAAAATAATCCT TAGTAAAGTCAATGCAATGTCCCTAATAAAATCAGGGCGGTTAATTTTTTATTAAAAGAATAAGAAACCATCATTTGAAT GCTCTTATATGTACATGCAGGTGTAGACATGGATACTTTCATGTGGTGAACAATGACTACACACACTGGGAAATGTATGC AATTGGTGGGAGTGCTAACCCTACTATCAACAGCCAGGGGAACAGGTTTCTTGCACCAGATAACAGGTTCAGCAAAGAGG TAACAAAGCATGAGGATGCACCGGATAGTGAATGGAAGAGCTGGAACTGGAGATCAGAAGGGGACTTGTTCTTGAATGGA GCATTCTTCAGGTCATCTGGTGCTGGTGCTTCTTCTATGTATGCAAGGGCATCAAGTCTCAGTGCAAGACCATCTTCTCT TGTTGGCTCCATCACTGTCACTGCTGGTACACTCAACTGCAGGAAGGGCTCTCGCTGCTGA
CDS sequence (LotjaGi2g1v0079900.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCCTCTTTCATGCTTCCTTGTTCTTTTCTCCCTTTCTCTTCTAACACCAAATTTTGTTTCCTCCTCTGCAGTTCG AGATCCTGAGTTGGTTGTCCAAGAAGTACAGAGAAGCATCAACGCCTCAAGAAGAAACTTGGGTTATTTATCATGTGGAA CCGGTAATCCCATTGATGACTGCTGGCGATGTGACCCTAATTGGGAGAACAACCGGCAAAGGCTAGCAGATTGCGCCATT GGGTTTGGCAAGGATGCCTTGGGAGGAAAAAATGGTCAAATCTACGTCGTCACTGACTCCGGTGACGACGACCCCGTGAA CCCGAGGCCAGGGACACTGAGGTACGGCGCCATACAAGACGAGCCACTATGGATCATCTTTAAGAGAGACATGGTGATTA ACTTGAAACAAGAGCTTCTAGTGAGCAATATCATCATCCATGGGATTAACATCCATGATTGCAAGCCCACTGGGAACACC GATATAAGAGATTCCCCACACCATTCTGGGTTTTGGACTGTGTCAGATGGAGATGGTATTTCTATATTTAACTCAAAGCA TGTGTGGGTTGATCATTGCTCTTTATCTAATTGCCGTGATGGTCTCATTGATGCCATCCATGGATCCACGGCTATCACTA TCTCCAATAACTACATGACCCATCATGACAAAGTCATGCTTTTGGGACACAGTGACTCTTACACACAAGACAAGGACATG CAGGCCACTATAGCCTTTAATCATTTTGGTGAAGGCCTTGTCCAAAGAATGCCAAGGTGTAGACATGGATACTTTCATGT GGTGAACAATGACTACACACACTGGGAAATGTATGCAATTGGTGGGAGTGCTAACCCTACTATCAACAGCCAGGGGAACA GGTTTCTTGCACCAGATAACAGGTTCAGCAAAGAGGTAACAAAGCATGAGGATGCACCGGATAGTGAATGGAAGAGCTGG AACTGGAGATCAGAAGGGGACTTGTTCTTGAATGGAGCATTCTTCAGGTCATCTGGTGCTGGTGCTTCTTCTATGTATGC AAGGGCATCAAGTCTCAGTGCAAGACCATCTTCTCTTGTTGGCTCCATCACTGTCACTGCTGGTACACTCAACTGCAGGA AGGGCTCTCGCTGCTGA
Protein sequence (LotjaGi2g1v0079900.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTPLSCFLVLFSLSLLTPNFVSSSAVRDPELVVQEVQRSINASRRNLGYLSCGTGNPIDDCWRCDPNWENNRQRLADCAI GFGKDALGGKNGQIYVVTDSGDDDPVNPRPGTLRYGAIQDEPLWIIFKRDMVINLKQELLVSNIIIHGINIHDCKPTGNT DIRDSPHHSGFWTVSDGDGISIFNSKHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDM QATIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDAPDSEWKSW NWRSEGDLFLNGAFFRSSGAGASSMYARASSLSARPSSLVGSITVTAGTLNCRKGSRC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| PANTHER | 5 | 142 | 138 | 3.0E-233 | – | |
| PANTHER | 5 | 142 | 138 | 3.0E-233 | – | |
| Phobius | 16 | 23 | 8 | - | – | |
| Phobius | 24 | 378 | 355 | - | – | |
| SUPERFAMILY | 39 | 372 | 334 | 1.11E-90 | ||
| Gene3D | 55 | 371 | 317 | 1.1E-106 | ||
| PRINTS | 78 | 95 | 18 | 2.5E-39 | ||
| PRINTS | 102 | 127 | 26 | 2.5E-39 | ||
| SMART | 114 | 301 | 188 | 4.6E-82 | ||
| Pfam | 141 | 295 | 155 | 1.3E-20 | ||
| PANTHER | 141 | 378 | 238 | 3.0E-233 | – | |
| PANTHER | 141 | 378 | 238 | 3.0E-233 | – | |
| PRINTS | 320 | 344 | 25 | 2.5E-39 | ||
| PRINTS | 349 | 372 | 24 | 2.5E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0079900.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…