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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0102900 |
| Transcript ID | LotjaGi2g1v0102900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 115; TAIR: AT3G07950.1 rhomboid protein-like protein; Swiss-Prot: sp|Q8LF05|RBL19_ARATH Rhomboid-like protein 19; TrEMBL-Plants: tr|I3SV60|I3SV60_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0102900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:34511899..34518934) extracted from Lotus japonicus Gifu genome v1.2.
GGGGTGCAAAACCCAAATCCCGTTGAACATTGAAATGAATTCTCTCCGATCCAATCCAAATGAATGAATAGTGCAACTGA AGCAACCTCCGACGAAGTCACTCTTCTTCTCACACCTCTTCTCTTCGCCAAATCGTTCACAGATTCCGATCACCACCGCC ATCGAAACCCGAGTCCATGAGCACGCCAACAACGGTTTCATGGGTGCGTTCACCACAACTGAGATTGTCACCGCTTCTTA TTCTTCTTCTTCTTCTCCTTGAAACACCCTCGGATCTGTTCGATCTTGATTGATTTCAATTCTTCAAACTTCACACAATT TTGATTGATTGATTGATTGATTTCTTGTTACAGGGCACGGGCCTCTTCTCTGGGTTCACTCGACTATGCAAGGGCCTTGC GGTGGTTCTGGTTGGTAGTCATCTTCTCATCCACTTCTTCCCTTCAGCTGTTAACTATCTCGCTCTTATTCCCGCAAGGT ACATTTCATTTTCTTTTAATTTTTCATTTTATTCTGAATTTCGTTTGTTGGTTTCTCTTTTTGGGTGCTAATGTTCTTAG TTTTATTACTCTTACTAATTGCCTACAATGTATCTATCTATGTTAGTGTTTTAGGATTTTAGCATGTTTTACTTTTAGTT TTGCAAATGAAACAGTTGTTGCTTTCGACCTCAGTGAATTCTTGATGCTATTTCTGAAAGGGGGGCAGAAGGCATGCTAT TTTTGACTTATGAATTGAATGTTACGGGTTGCATGACATGTGTATTTGATATATGGTTAATGTCTGTTCTTTTTACTTCG TATCGAATGCTAAAACTCTCCACCCTTCTCAATCATTTGACTCCAATAGTCCATAGCATCTAGTTGTTGAATCTATACTA TTAGGTTGTGTAGAGGCTTAAACAATTGGAAGCAAGGTTGTAAAAACCGGCCCCCAGCTCAAACGGGGGCCTGGCTCATC AGTAACTGTGATTCAACGCTTTTCACAATCTTGATCCATAGTCTAATGACAGTCCCACCAGCTTACAATCTTCTATGTGA ACGGGATCAAAATTCACCATCAACACAAGTAGATGAGCGAAGTTGTCAACCTTGATTGGAAGTTTTAAAATCCTGATAAG CTGAGGCCTAAAGAATAATGGTAATTAGACATAATTTGTGTCAACTTTTCTTCACCTTATTACCATAGAATCTTATTTGA TTTTATTGTGTAGTTTTAGTCTTATTACATTATTTTATCCTTAATTGTATTGCTTTTTGGCAATTTAATTAAAAGCTGAA AGCCCCTCTTAAGGGAAGTATGGGAGAAGTGTGTGGTATCTGAGTACATAAGACATAGGTTGCATCTTCGTATGCATAAG AATTTTTTGGCTTATGGATGCTTCCAATCAAGTCACTTAAATTGTGGCTGCTAGATTTTCCATAAATGATGTAAGTGGGT AACCTTCTCTTAAATTTTGCTAATAGAAGCTATAATGTAAACTCATATATGAGTTGAATGATAATAATGAGGTGGATTTT GCTTCTGATTTCTTGTTTCTCTATACAAGTCCTCTCCTCATTATGAAGGGTTGTAGTGGTTTTATGGCCTTGATTGGGCA TCTAGCACTTCAGTGGAGCATTATTGAATGTATAAGGTAGTACATCTTATTTATCTTGGGTTTAAGACTTTTGAGCCCGT ATGTATAGGCCTATAACAGTTATTTGAACATTAGGTATTTGGTTCATAGTGAATAACATGAGAGCACGACCTACTTATTA AGGGTTTTAGTGGTATTTAGCTGAAGGAGGATCCTGAATATCCAATGGGCTTGATGACATCATCAATCATGTGTATAAAG GAAGAATTTAATACCCCAAGGTCCAAATTTAAGGGAAGGCATTGGTATTAGGGTATGTAATTTTAAGTCCTTAAGGCAAC CTAGTATTGGTAAGCTGGACTTGAGCATTTTTTATGCCTTGTGGTTAGCTTGTTTTTTCTGCTTGTACAATAGCTACTTC TGTTGCTACAGTGACTACTTGGCACTAAACTTTGATTGAAGAAGGATGTGCAATCAGTGGCCCTTGATTTCAAAAGCTTT GTTTCACTAGTTTGTCTTGATGAAAACTTTTCCCCTTTCGATAATGGGTTGGGCAGATTTTAAACTTTTCCCTGTACCAT GCAGGCCACATCTGGTCGCTAGCTATTACTACATCGAAAATTTTCATTAGATCTGTGTATTCCTTATAAAACCAGCGTCT CTGAGAAAACACATACAGGGACTTTTTATCCAGTCTGTTTTTCTCCATGCTAGAACTGATTAATTTTCTTCACCTGAGCC TCTTATGCTGGAAGCTGAGTTGTTATATTTGGACACTAACCTGTCAAGTCTCAAAGCTAGAACGAGTTGTCTAGGAATCC AGCCACTCCCTGCTAAATAGTAAATGCAGGGTGACTAGCATAACCTACGAACTCAGTATGTCGATGTCTCAAGATCTCTG GTCACCATGAATGTGTAACAATAGATTACTCTCAAAATCACTCAAGAAGGGTGTGGTAAGTTACCATGAAATGGAAATAC CATCTATAACATTTGTTCAGCTAAGCTGTCCCAAGTATACACAAGAACTAGAATTGAGAAGGGTGCAGATGGGAAATCAT GTTGTATGAAGTTTAGCTCTTTTGGTGTCATAACCTTTCATGTTTGGAATCATTATCTACTTAGAAAATGAACTGTGATG ATTTTGGAGCTTTTGGAGCATACAGGACACTTTCCATTTGTTACTAGCTGTCATGTTGTCTTTTTGAAAACCTGTCATGT TTTGGCCCTGAGTATGCTCCATATGCAACTTCTGGTATGATTAACTCCATATCTAACCAAGTAACTTCTCTTCTCGGGTT GTGTGTAGATGATTTGAACTTTATGTTCCTAATAATAGAACAAGTTCTTCTAATGTTTTCATCATTATATCAGTTGTTGT GAGTTTTCAAGTCCATATATGGCTTGAGAGTTGAGAATACTTTGTTTAGCTTGTAAGAGTTTGTTCTGATCTTTTTGTTC TAATGCTTCGCGACTAGTGTTGGTTGTTTTGAATTTAGTGACTTGGGAAGCCACATGATAATACACTTGAGTGAAGGTGT TTACTTTTATTCTCTTAGGAGCTTATGGGTGCTGTGATTAACATCAACTGTGCTCTCTTTTTGAGCTTAATCTTATTGCA ATATCGCACATGCAATGTATTTTTTTTTTTGTTGCATTAATTTTTACTTACCGTAATAGTTGTCATCCATATAGTTCAGT AGTCTTCCTTCACAATTTTTGTTGTAAAAGTCAGTTTTTGCTTTCATGGCTATTGCACATTTGGTGAAATTATTGGAATA CATGTTGCTTGTAGTTCTTATAGTTAATATATACTAGAATCTTGACACACATTTTGTTATGCAGAAAGCAGATAGAAGTA AATTTTTATAACTCTAATAGCTACCTGCGAACCACAATTTCTTACTTTTGAGGTTCTTTCATACCACAGAGATCAAACTC TGGTTTGCTATGTTATGTTATTATAGATATAACTTTGGGAATCAATTCAAAGCTTATTCTTCTGATCATCGTGCTTGCTC AATTCCCCAGTGTGATTATGTGGCATTGATATTCCAATTTTTCATTTTAGAACTTATTTCTGTGTTGGTTTTATTTTGCA GGACAATCCCATTTGCCTGGAACCTCATTACAGCTGGTTATATTGAACAAACTGTGTATGGGGTATGCACTTACTGTTGT TCAAACTATGTTTCTATACACTATCATTGCATCACCTAACTGTATCTGTTGCTAATTTCTATAAGAAAAAACTTTGCATT TAACATTGTTCGTACAATTTTATAGGTAGTGGTCAGCACATTCAGTCTCCTATTTTTTGGGAAACTGCTTGAGCCAATAT GGGGTTCCAGGGAATTCTGTAAGTTCATCTTTGTGGTCAACTTTCTAACTTCAGTTAGCGTATTCATCACTGCTATTGCC TTATACTACATTACAAGACAGGAGAATTACCTGTAAGTATATAAAATCCATTCATATGAGATGATATTTTCTATCTGTTG CTCATGCTGTTCTCTGTCTTACTTTCTTTCAGTATATTACATTCCTCCCTTCCCACACCTTTGCTGCAGTTTGGATCTCC ATTGTTATTTTAATAGAAAGCTAAATGCAGACCCATTCTAAGTTTCATTGCTTATGGCTTTTTGCCATAACATGTAGAAA ACATTGTTGGTTCAGTATTTCTACTAAAACATTTATTGAGTACAGTAATTTTGATCCCTAAAAATATATGGTTTGTCACT ATAGTTACTGAGATGAAAATTATCATTTTCATCCCCAAATGATAAAAACGAATTCAATTTAGTCCCTCGAGATTTCAAAA TTAAGCATCTTTCAATTTTCAGAGAAAATATTGATCTCATTATTTATTTTTTTAATATCTGAGGGACTAAATTGAACTCT TTTAGTATTTAGGGAAGAATATGATAATTCCTATCTTTCAGATGCTACAGTAGCCGGCCTCATGTTTCAAGGACCAAAAT GATGATTTACTCGACATTAATTTGTTAATAATTATAAAGACATTATTGTTTTGGTAACCCCCAGACTCTGAAGTTCTGTA TTATCTGTTAAACTTAAGAGACAATCATCTTTCCATTTCCCTCACCCACAATTTCTCTTAATGTTCTCTTCTGGATTTAG TTACATGCCTCTTTCTGGATTTCATGGAGTTATATCTGGTTTCTTGGTTGGTCTCAAGCAAATTATACCTGATCAAGAGC TTCCTTTTATAAAGATAAAAACAAAGGTTCGTTCAACTGCCTGCTTCTTATGATTCATTACTTATTAGCTACAATAGGTT TATGAAGATACCTTTAATTTGTTGTTACTTCATATCTCTTCAGTGGTTGCCATCTATCACTTTATTGCTTTCAATTGCTG TTTGCTTCTGGACACTAGAGGCTACATCATATCTTCCAACCATTGTATCTGGTACATATATAAGCTGGATTTACCTAAGA TACTGGCAGAGGAAACCAGAAACAAAACATAGGGGTGACCCAAGTGAGGATTTTGCTTTCTCCTCATTTTTCCCAGAATT ATTAAGGTAAATTCTGCTTTTAGTTTGCAGAAAAAATTACTAATTGTAGGTAGGTTCTTGTAATCGTTCTAAATTTGAAG TGACTTATTTTTTTATTTTTGTTTTGCTGCCTTGTAGACCGTTCATAGACCCTATTGCATCAATATTTCATCGAATGCTG TGTGGAAGGTCTGATGCTTCAAATGATGGTCAAGATTACAGTCTAGGAAGTGAACCTTTACCAGGTTCTGACTCAGTTGA GGCATCTAGGAGACGGTAATTTTACATGGCTGTTGTCAATGTTTAATTGTGTCAGTTTTCAATGTATTGTCTTGAAGAAA TTGCTTCTATTAATCATGTTTAAGGGGTGAGGTGTCCAATCATTTTTTGGTGGCTTTATTGGCTTTATTTTAGATAAATT ATTCAAATCTAAGAAAGAAGAAAAAGTTGTTTTTAAATTTTAGGATTGTGTTTTTTGTCTTTTCTTTCTCATTCTTGTTT TGTATAAAATGAAAATTGCTTTTTATTCTCAACTTTCTAGGTGCCATATTACCCTTCCGTTCTCTCCAATCCGCATTAAA TGAAAATGACTTAATGGAAAAAATTAGAATCAAAGGCATAATAGCTTCTGTCTATTAACACTTCAACTCTTCATCACAGT GGAAAAATACAGAGCTTTTCTTTTGGTTTACATAACTAGTGAGGTCTAAGTTTTACTGGAATCTGGACATGTTATTCATT TTGTTAGGAGGGTTCCAACTCTAAGTAGCACTCTCTTTAAACCATTTCTGTTGCTATTGCAACCATAAAATTGTCATGAA TTGTGGAGCAAACATATCGCTGACTAATACTGAAACTCTACTGACCAAAATAGTTTAATTATTACTAGCATTATCATTGA AAAATGTAGAACTATTCCATTCCTGATCAAACTTATCAAATCATTGTTTTGTTTTAAAGGACATGATTTGGTAAACAATT TATTGAAGCACTTATGTGTGTCAATAGGATCTTCTCACATAAGCACTTATTTGTGAAATTTATTGAAATAAGCTCAAAAG AGCTTCATCAGTTTTCTTAAGCTTTACCAAATACCTGTTTAAATTCTTATGTTATAAGATAAGGTCAAGTAAATTCCTTG TTTATATTTTTAGTTTTAATTTGAGATTTTAACAACAGCAATGGCAACTGTTACATCACTCCTGTAGTTATTGTACTACA TAAATTAATCACAGTGATACTGTTCATGCAGAGAAAGAGGTGCACGAGCACTGGAAGAAAGATTGGCTGCGGAGAGGTTA GGTGCTGCACGAACTGCAGGGGAGTCACATAGTGATACTGCTGAAAATGTATGATTCCTGAGCTTTTGCAAATACGGATC AGTTCAGCCAAAATGGAATTTTCAGATAGTAGAATGATTCAATTTTAATGTGCATTTTGCCTTGGACCATGATCCATACG AAATTAAAGGTTTGTCCTTTTTGTCAGATAAATATAATTTGACTTGCTAGTGTACTTACACAAAACCAGAATCTAAAGAA TTTTTGCAATTGATACTGTCCCTATCAAAGACTATTTGAATTTGGGGGTTGAACCAAATCAATTTTGTGGAGAGAAGTTA CCTGAATTAATTTTATTTTATTTTAAAATCTCATCATATTGTAAGTTTGATTCTGGATTAAAATTTGATTTAGTTCATTC TGATTTTAAGTACTTTGGATCGAAATGAATCTTGTGGAGAAAAGTTCTCTGAACTAATTTTACTTTGAAGAGATTTTCTC CTCTACAATATGGAGAAAAGAGGGATAGAGGAATTTGGAGGGTAATTGAGAGGGACAAAACTCCTAGCAACTTAATTTTA TGGTTTCATCTACCGTGGGTCAGTTTAACTGACAAAGTGGTTCAGTTATGTGAAATCCAACAATCTTGTGCGTTGG
CDS sequence (LotjaGi2g1v0102900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCACGCCAACAACGGTTTCATGGGGCACGGGCCTCTTCTCTGGGTTCACTCGACTATGCAAGGGCCTTGCGGTGGT TCTGGTTGGTAGTCATCTTCTCATCCACTTCTTCCCTTCAGCTGTTAACTATCTCGCTCTTATTCCCGCAAGGACAATCC CATTTGCCTGGAACCTCATTACAGCTGGTTATATTGAACAAACTGTGTATGGGGTAGTGGTCAGCACATTCAGTCTCCTA TTTTTTGGGAAACTGCTTGAGCCAATATGGGGTTCCAGGGAATTCTGTAAGTTCATCTTTGTGGTCAACTTTCTAACTTC AGTTAGCGTATTCATCACTGCTATTGCCTTATACTACATTACAAGACAGGAGAATTACCTTTACATGCCTCTTTCTGGAT TTCATGGAGTTATATCTGGTTTCTTGGTTGGTCTCAAGCAAATTATACCTGATCAAGAGCTTCCTTTTATAAAGATAAAA ACAAAGTGGTTGCCATCTATCACTTTATTGCTTTCAATTGCTGTTTGCTTCTGGACACTAGAGGCTACATCATATCTTCC AACCATTGTATCTGGTACATATATAAGCTGGATTTACCTAAGATACTGGCAGAGGAAACCAGAAACAAAACATAGGGGTG ACCCAAGTGAGGATTTTGCTTTCTCCTCATTTTTCCCAGAATTATTAAGACCGTTCATAGACCCTATTGCATCAATATTT CATCGAATGCTGTGTGGAAGGTCTGATGCTTCAAATGATGGTCAAGATTACAGTCTAGGAAGTGAACCTTTACCAGGTTC TGACTCAGTTGAGGCATCTAGGAGACGAGAAAGAGGTGCACGAGCACTGGAAGAAAGATTGGCTGCGGAGAGGTTAGGTG CTGCACGAACTGCAGGGGAGTCACATAGTGATACTGCTGAAAATGTATGA
Protein sequence (LotjaGi2g1v0102900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTPTTVSWGTGLFSGFTRLCKGLAVVLVGSHLLIHFFPSAVNYLALIPARTIPFAWNLITAGYIEQTVYGVVVSTFSLL FFGKLLEPIWGSREFCKFIFVVNFLTSVSVFITAIALYYITRQENYLYMPLSGFHGVISGFLVGLKQIIPDQELPFIKIK TKWLPSITLLLSIAVCFWTLEATSYLPTIVSGTYISWIYLRYWQRKPETKHRGDPSEDFAFSSFFPELLRPFIDPIASIF HRMLCGRSDASNDGQDYSLGSEPLPGSDSVEASRRRERGARALEERLAAERLGAARTAGESHSDTAENV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 8 | 309 | 302 | 8.4E-169 | ||
| PANTHER | 8 | 309 | 302 | 8.4E-169 | – | |
| SUPERFAMILY | 19 | 207 | 189 | 6.8E-12 | – | |
| Phobius | 24 | 48 | 25 | - | – | |
| TMHMM | 26 | 48 | 23 | - | – | |
| SMART | 49 | 147 | 99 | 3.4E-43 | – | |
| Pfam | 49 | 147 | 99 | 6.1E-32 | ||
| Phobius | 49 | 67 | 19 | - | – | |
| TMHMM | 61 | 83 | 23 | - | – | |
| Phobius | 68 | 86 | 19 | - | – | |
| Phobius | 87 | 97 | 11 | - | – | |
| TMHMM | 98 | 120 | 23 | - | – | |
| Phobius | 98 | 120 | 23 | - | – | |
| Phobius | 121 | 125 | 5 | - | – | |
| Phobius | 126 | 143 | 18 | - | – | |
| TMHMM | 127 | 149 | 23 | - | – | |
| Phobius | 144 | 162 | 19 | - | – | |
| Phobius | 163 | 180 | 18 | - | – | |
| TMHMM | 169 | 200 | 32 | - | – | |
| Phobius | 181 | 185 | 5 | - | – | |
| Phobius | 186 | 203 | 18 | - | – | |
| Phobius | 204 | 309 | 106 | - | – | |
| MobiDBLite | 255 | 278 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Retrograde vesicle-mediated transport, Golgi to ER | The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi2g1v0102900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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