Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0103000 |
| Transcript ID | LotjaGi2g1v0103000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chlorophyll a-b binding protein, chloroplastic; TAIR: AT3G54890.1 chlorophyll a-b binding protein 6; Swiss-Prot: sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chloroplastic; TrEMBL-Plants: tr|I3S050|I3S050_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi2g1v0103000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:34618798..34622054) extracted from Lotus japonicus Gifu genome v1.2.
CGAGTTGTTCCAGCTCAAGAATCAAACAGGATGGACAAATATCAACGTGGACCAATAACAAGTCACGAGCAAGCATCATC ACCCAATGGAAATCCACTTTTGGATTTTCCTATATCCAAACCACTCTCCTATATTCAGCTATTGAAAGTGCCATTCCTCA ATTCCATTCTCTCAGTTACACACCCCATAATTTCCAACATCCTGTGAGAATGGCTTCTAACACGCTTATGAGTTCTGCTA TCTCAGCATTCCCTTCTCTTCTTTCTTCTTCAAAATCAAGATTCGCCACTGCAGCTCCACTATCATGTTTTGGTACCAAT GCCTCTTCTCGTTTCTCCATGACTGCTGACTGGATGCCTGGCCAGCCTAGACCCCCTTACCTTGATGGCTCAGCACCTGG GTATGCATCACTCAATTCCTTATTCTGTTCTGATCATCATAGATTTGTCCAGTTTCAAGAGAGTTAATTAGTGCTTTTGA ATTCTTGGTGGGGTTTCGTTCTGATGAGGTTTTGTGCTTGTATGTTGCTGTGTTTTTGTGTTTCAGTGACTTTGGATTCG ACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGAGAGATTCAAGGAGTCAGAACTCATTCACTGCAGATGGGCCATG CTTGCTGTTGTAAGTGTCTGTCTCTATTGAACAAAAAAATAAGCAAACGGCTTAGTTTTATCTAAGTAAGATGCTATGCA GCACAAACATGAGCTTAGTTTAGTAGTCCCTTTTATCTGAGAAAGTATTTTTAAAAAGATTTGTCATTTCTGAACTCAAG TAGACATGAATGGACAGTGCATTTCTACATGGTTTTGAATCATAAGCTGGATTCTTTAGCATTCTCATCTAAAGTGACCC ATGTTTTCTTTTTATTAATGGCAATTTTGGGTATTGGTTTATATGGTTCTAATTAATTGCAAGTGAATGATCAATTTGGT GAAAGATTTTGTCGCCGGTAAGTTAGTCTTTGGAATAATGAAATATATTTTAAAGTCCCAGGATGTGTAAACATAGGCCA AGTTGGTACCTATGATCAGATTCGGCGAACTAAAGTGCTGGTCAATTTATGCCCTGTAAGGCCTAACTTAACTCACGTTT TACACATTATGAGACTTAAGAACGTATTTCATTCTTACAAGGACTAACTTACTAGTGACTAAATCTTTGAGAGACCAAAT TGACAATCCATTCAAATTGTGAATGAACAAAGCAAATCTTTCAGTGGCAAAATCATTTTCTTGCATTCAGATATTCAATT TTGTTGTCCCAAACAGTTGAAACAAAATTTTAGTTTGTTGAAAAGTGTTTTATATTTTGCAGCCAGGGATTTTGGTACCA GAGGCACTAGGCTTAGGCAACTGGGTAAAAGCTCAGGAATGGGCAGCACTTCCTGGGGGACAAGCAACCTACCTAGGCAA CCCTGTTCCATGGGGTACCCTCCCCACCGTTCTGGCCATTGAATTCCTTGCTATTTCTTTTGTGGAGCACCAGAGAAGCA TGGAGAAGGACCCAGAGAAGAAGAAATACCCTGGTGGTGCTTTTGATCCTTTGGGATACTCCAAGGACCCTAAAAAGTTC CATGAATACAAAGTCAAAGAAATTAAGAATGGTAAGGACTTTTGAGCCATAAATAAAGATAAAATCAAAATGCATGGTCA AATTGGTTCCTGAAAGCGTTGGGCGGCTGCGCCGGCAAGTTCGTCACATAATAAGGAAATAACTCTCACGGTTGGTTCCT GAAAGCATTGGGCGGCTGCGCCGGCAAGTTCGTCACATAATAAGGAAATAACTCTCACGGTCCTTGATTGTGTTAAATGT CAGTGAAGTTACACAATCAGGGACCGTAGCCTTTATTTCCTAAGTGCATGGACAAACTTTGCAGAGCTCAAACTTTCAGG GACGAATTTGTCCATTCACTCATAAAGATACTTATTATTTTGTTGTGTAGAAAACTGACCAGATTTTTTTTTACTTAGGA CGTCTTGCTCTGTTGGCTTTTGTGGGTTTCTGTGTTCAGCAATCAGCTTATCCAGGCACTGGACCCTTGGAGAACTTGGC TACTCACTTGGCTGACCCATGGCACAACAACATTGGGAATGTCCTTATTCCCCCACAATAGATTTTGTAATGAAAATTCC AATCTTTGGTAATGATAGTTGCTACCTGTAATACTCTCGTGAAACATTTTGTAATGAAACTGATCGATCACGCAATGTTT GTATGATCCCAGTGTTGTAATTAAACGTTGAATTAATTTGGTTCAAAACTCATGCTATGGCATGCAACCCGATGGTATGA AACAAAAGCTAAAAGTGAACCTCAATTAAAACCAATGATTTGCAATACATTCATATATGAGCGCACAACACATTGAATAG CAAACATGAATATTTTTTTTGGTTATTAGGTTATTGTTGAGGGAATTTCAATGCAGAATTTAGTGAATATAGAGGGATGC AAAACATTCCTATGGAACTCATGATATATATCGCTCTGGAACTCATCATATATATCGCAACTGCTAATATTTGTGGGTTT TATGATTTAAATAGGTTGAATTTGAAATTAGGGTTGCGTTGTTGCCATTCTAAAATCTTCTTGAAATATTAAAAAGGTGT TGGTCCAATAGTAGGCAGGTTAAATCCTCGTAAGAATGAGGTAACAAGAGCGAATCTCTGGAAAATCATTTATTTTGGAG AGACCGCATCTTTTTTTTTTGTGAATGGGCGGGGCTAGGCCCTGAAAAGAAAAGAAAACGGAAAAAGATGCAAAGCAACT ACTCCTTCACAACGGAGGTTCCAGTTGCATCAGCGAACAACAAAGGCTCTAACTCCAAGGAAGGCTCTTGGATGATTGCG AAGGCAAGATCCTGTTGCGCGCCAGCTTTAGCAAGCATTTCCTTCACGCAAGGTATGCCGCAAGTGCACTTCACACCCAC GCTCCAAGAGGTCACGAATGTTCCCAATCAAAGAAGCATACCAATGATGAGGAGGAGGAGCACATTGCAAAAAATAACTG CAGAAGCAGAATCCGAATAACAAACAACCTTGCGATAGCCTCGGGTCCAAGCAAGGCTCAAGCCCTGCAAAATTCCAAGC AGCTCCATATGTAGGATGTTAGAGTCACCACCGTATCCACGAAAACTCAGAAGCCAAGACCCGCATCTATATCCCAATCA GAATAACACTTACAAAAGACAAAAAAAAATATTTATTGTGTTATAAGTTAGCTCCAG
CDS sequence (LotjaGi2g1v0103000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTAACACGCTTATGAGTTCTGCTATCTCAGCATTCCCTTCTCTTCTTTCTTCTTCAAAATCAAGATTCGCCAC TGCAGCTCCACTATCATGTTTTGGTACCAATGCCTCTTCTCGTTTCTCCATGACTGCTGACTGGATGCCTGGCCAGCCTA GACCCCCTTACCTTGATGGCTCAGCACCTGGTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTT GAGAGATTCAAGGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTACCAGAGGCACT AGGCTTAGGCAACTGGGTAAAAGCTCAGGAATGGGCAGCACTTCCTGGGGGACAAGCAACCTACCTAGGCAACCCTGTTC CATGGGGTACCCTCCCCACCGTTCTGGCCATTGAATTCCTTGCTATTTCTTTTGTGGAGCACCAGAGAAGCATGGAGAAG GACCCAGAGAAGAAGAAATACCCTGGTGGTGCTTTTGATCCTTTGGGATACTCCAAGGACCCTAAAAAGTTCCATGAATA CAAAGTCAAAGAAATTAAGAATGGACGTCTTGCTCTGTTGGCTTTTGTGGGTTTCTGTGTTCAGCAATCAGCTTATCCAG GCACTGGACCCTTGGAGAACTTGGCTACTCACTTGGCTGACCCATGGCACAACAACATTGGGAATGTCCTTATTCCCCCA CAATAG
Protein sequence (LotjaGi2g1v0103000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASNTLMSSAISAFPSLLSSSKSRFATAAPLSCFGTNASSRFSMTADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENL ERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEHQRSMEK DPEKKKYPGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGNVLIPP Q
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 2 | 239 | 238 | 3.1E-140 | ||
| PANTHER | 2 | 239 | 238 | 3.1E-140 | – | |
| Phobius | 10 | 20 | 11 | - | – | |
| Phobius | 21 | 28 | 8 | - | – | |
| Phobius | 29 | 241 | 213 | - | – | |
| SUPERFAMILY | 38 | 237 | 200 | 1.7E-59 | – | |
| Gene3D | 49 | 235 | 187 | 9.2E-85 | ||
| Pfam | 55 | 209 | 155 | 3.0E-46 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Photosynthesis, light harvesting | Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi2g1v0103000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…