Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0109000 |
| Transcript ID | LotjaGi2g1v0109000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein, putative; TAIR: AT1G55530.1 RING/U-box superfamily protein; Swiss-Prot: sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1; TrEMBL-Plants: tr|K7MHI0|K7MHI0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0109000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:37777191..37778736) extracted from Lotus japonicus Gifu genome v1.2.
AATTAAAGCAAGGCAAGGAAAAGCTGCATTCAAATTTAACCTGGGAATGCCATAATAGAGAGCCCAAAATGATTGGTGGA AACCTTGAAGCTAAAACAAACCCAATCTAAAAAAGAACATTAACTGGAAGTATAAGAGGGCGTTAGACCAAATTTCATCA TTTGATGTTACTGTTCTTCTCCCTAGCTGAATGAGCTATCACATGTAATCTATTCTGAAACTTTGTTCTTTGCAGAATAT GTCCCTTCCAGGTTCTTCTGCTCAACATATTGCATTAACTCTGGTAGTTTATTTTTCTGCTTTATCTTTGCTATGCGTGA AGGGATTCCTGAAAACAACTACAGAAGGTTCCCATGTCTCATTAATGAGATTTCTTTCCTGAGGCTTTAATAAATTCTCC ACAAAACAAAACCTTATTTATATGCTTATAGTGTAGCAATTAACAAGTCATGGACGGTGAACAATGGTGCAATACATGCT CCAAAATGGTGAAGCCAATATTTGAAGCTGAGAACAAATGTCCATTCTGTGGTACAGAATTAATCACCGAGGCAATGGGA AGCATAAGCGACCAGAATGATGCTATCGATTTAAGGTCAGCCTGGGTTTTCTCACTTTATGCCCCAATTTTCCTTGGCTT AATGGGTGCTTTCAGCCCTTCTCTTGCAATCATTGGTGCACAAGAAAGCAGCACCTCAAGAGAGGATGAACCAGAAAGGG ACAATGAACTTATACTTGGGAGAAGGAGGAGAGCCTCAACATACATGCTGCACATCTTTCGCAGTCTTCATGTGGGGATG GTGTCTGAATCAGAGAACATGGAAGACAACAATAGAAACATAGATGGCAGCAGCATACTTGTCATTGATCCATTCAATGA AGGGGGTGCATTGATTGTAAGAGGTCCTAACTTGAGCCACACAAGTAGTCCAAGTCCATATGAGAATGCTTCTGGTACCT TAAATGACTTTGTTGCAGGATCTGGGTTTGATTTGTTGTTACAACATTTGGCCCACATTGGCCCTAGTGGTTATGCTAGT GTGAACCCTCCAGCACAGAAGGTTGCAATTGAAGCAATGCCTAGTGTGACTAATGATGAAAAGTTTCAGTGCACCATATG TTTGGAGGATCTTGAGATTGGGATTGAAGCGAAAGAGATGCCATGCAAACATAAATTTCACGGTGATTGCATTATCTCAT GGCTAAAGCTTCATAGTTCTTGTCCAGTTTGCAGGTTTCAGATTCCTTCTGAAGATTCTTCGAGTGTTGAGGCCAGTTTA GGAATCAGAAATGGGGAAAATCAGAACAGTGAGCTAGCTGGAGCTAGAGAGGAGAGAACTAGATATGGAAGGAGGAATTG GTTTCCAGTGCTGCAGTCATTTAATAATTTCCTTCCTTCTCCTTGATCATTACTCCATCACCTAATTCTAAAAAATTTCA TGCTTCTTAAATTCTTCATAATTGTATATATGTTGTAGACTCCCTAGTCTGAATTTCTTGTATATTCATTCAAATATAAA ATATTTTATAATATTTTGAATAACAG
CDS sequence (LotjaGi2g1v0109000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGGTGAACAATGGTGCAATACATGCTCCAAAATGGTGAAGCCAATATTTGAAGCTGAGAACAAATGTCCATTCTG TGGTACAGAATTAATCACCGAGGCAATGGGAAGCATAAGCGACCAGAATGATGCTATCGATTTAAGGTCAGCCTGGGTTT TCTCACTTTATGCCCCAATTTTCCTTGGCTTAATGGGTGCTTTCAGCCCTTCTCTTGCAATCATTGGTGCACAAGAAAGC AGCACCTCAAGAGAGGATGAACCAGAAAGGGACAATGAACTTATACTTGGGAGAAGGAGGAGAGCCTCAACATACATGCT GCACATCTTTCGCAGTCTTCATGTGGGGATGGTGTCTGAATCAGAGAACATGGAAGACAACAATAGAAACATAGATGGCA GCAGCATACTTGTCATTGATCCATTCAATGAAGGGGGTGCATTGATTGTAAGAGGTCCTAACTTGAGCCACACAAGTAGT CCAAGTCCATATGAGAATGCTTCTGGTACCTTAAATGACTTTGTTGCAGGATCTGGGTTTGATTTGTTGTTACAACATTT GGCCCACATTGGCCCTAGTGGTTATGCTAGTGTGAACCCTCCAGCACAGAAGGTTGCAATTGAAGCAATGCCTAGTGTGA CTAATGATGAAAAGTTTCAGTGCACCATATGTTTGGAGGATCTTGAGATTGGGATTGAAGCGAAAGAGATGCCATGCAAA CATAAATTTCACGGTGATTGCATTATCTCATGGCTAAAGCTTCATAGTTCTTGTCCAGTTTGCAGGTTTCAGATTCCTTC TGAAGATTCTTCGAGTGTTGAGGCCAGTTTAGGAATCAGAAATGGGGAAAATCAGAACAGTGAGCTAGCTGGAGCTAGAG AGGAGAGAACTAGATATGGAAGGAGGAATTGGTTTCCAGTGCTGCAGTCATTTAATAATTTCCTTCCTTCTCCTTGA
Protein sequence (LotjaGi2g1v0109000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGEQWCNTCSKMVKPIFEAENKCPFCGTELITEAMGSISDQNDAIDLRSAWVFSLYAPIFLGLMGAFSPSLAIIGAQES STSREDEPERDNELILGRRRRASTYMLHIFRSLHVGMVSESENMEDNNRNIDGSSILVIDPFNEGGALIVRGPNLSHTSS PSPYENASGTLNDFVAGSGFDLLLQHLAHIGPSGYASVNPPAQKVAIEAMPSVTNDEKFQCTICLEDLEIGIEAKEMPCK HKFHGDCIISWLKLHSSCPVCRFQIPSEDSSSVEASLGIRNGENQNSELAGAREERTRYGRRNWFPVLQSFNNFLPSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 50 | 50 | - | – | |
| PANTHER | 2 | 317 | 316 | 7.5E-135 | – | |
| PANTHER | 2 | 317 | 316 | 7.5E-135 | – | |
| Phobius | 51 | 75 | 25 | - | – | |
| TMHMM | 52 | 74 | 23 | - | – | |
| Phobius | 76 | 318 | 243 | - | – | |
| Gene3D | 193 | 268 | 76 | 7.9E-19 | ||
| SUPERFAMILY | 208 | 267 | 60 | 1.29E-19 | – | |
| Pfam | 220 | 262 | 43 | 2.3E-12 | ||
| SMART | 221 | 261 | 41 | 2.3E-7 | ||
| ProSiteProfiles | 221 | 262 | 42 | 12.445 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0109000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…