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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0117100 |
| Transcript ID | LotjaGi2g1v0117100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT4G09730.1 RH39; Swiss-Prot: sp|Q5VRY0|RH39_ORYSJ DEAD-box ATP-dependent RNA helicase 39; TrEMBL-Plants: tr|A0A151T4R6|A0A151T4R6_CAJCA DEAD-box ATP-dependent RNA helicase 39; Found in the gene: LotjaGi2g1v0117100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:43108108..43110789) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAATCTGCCATGACTTGAACAAAATCAGTTTCCAACAAATGCCAGAACTTTTGAAAATATATCCTTTGTTTTTTGGT CAATGTGGAAAATATATCCTTAATTTATGTTAAATTAATTTGTGCAATTTGTTAAGCCCAACAAGCCCAACCGGATCAAA GTTATTTCACCATTGCTGTCTACGGCACCGAATCCCCAACTCGCATTTGAAGTAGTGAAGAAACGATTCAAAAACCAGAG AAGAGAAGAGAAGCCATGAGAAGACGAGTCAGAGAGCTTCTGAGCTTCTCGTATTTTCTGCACTCTCCAGGGAAGCGTAA CCCACTCTCAAAACCAGCACCACCACCATCACACAATGCTAGTTTTCAAGGCTCCACCAGTACTTTCTCAACATCTTCCA AGTCCCAAAGGGATTCACTGCTTTTGGAACAGTTCAAGCAAAGGAAACTCAAAGGGTCCTCCTCAAAAGACCTAAAGGTG GATACTGCTGTTACTGCTGGTGAGAAGAAGGTGGTCCAAAAGGGTTTGCAGAATGAGAGTGAACCCACAATGGTGGTTGC AAATTTTAAGGAGTTGGGTGTGAGTGAGGAGCTTGTTGAGGTCATGGATGGGATTGGTGAATTTGTTCCTAGTGAGATAC AGTGTGTGGTTATTCCAGCTATTTTGGAAGGAAAAAGTGTGCTCTTGAGTTCACCCTCTGATCATGACAGGACTTTGGCC TACTTGTTGCCCCTTATTCAGGTTAGTTTTATTCTCTGCTCTTTTTTATTTCAAGGGTTTTGAGATTGTTGGATATTTTG AGTTTAACATGTCATCCTAGTTCTGTTTATTAGAGACTATCTATTTATGAGCCACTTGCAGATGTTTATTCCTACAAATT TCACGCTCCAAATGTTTAGTCCTAAGCGTGTGTTGCGAAGTCTGCGGCCAAAATAGTCATTTTAAAAGATAGAGCACCCT TCACCCAAAGTTAGTTTTTGAGGTTGAGTAAGATCTTAGCCCAAATTCTAAGAGATACAAAAGATAGTAGAATTTAGGAA ATGCAAGCTGGCATTAAATTCCATGGTTTGTTTATTTTTATTTGTTATTTATTTGGTATGGGTTTCACTTTGATAGTAAA ACTCGATATGTAATTCATAAGAAAAGATGTCAACTGGTAATGGTGTTCTTAACCATATTTATTCCTGTCAAATGGATGGT TTCTCAGCGTCAAATCCCGAATTCCTTTTGCTTCTTGGTTGTTTAATCTATTTGAACTCTGCTATAGAGCATTGTTTGTA TTCTTTAGTAAATCAGAAAAAAAGGATCAGTATCTCAGTATTTAGAAATTTCTCATTTAGTAAATATGAATTTGTCCTTA TTTTCAATTTCAAGACATCCAGGCAAGAGAGAACAGGTTTCTATTTGTAGTTGTGTTCCTTCTATGTTCATTGTTTACTG TGAATAATTGGATTAACTCTGTTAACTTGTATAGCTGCTAAGACGGGATAGAGAGTTGCTTAGTTCAAATTCAAAGCATC CTCGAGCCATTGTGCTTTGTGCTTCGGAGGAGAAAGCTGCACAGGTGACTATCATTACTATCTACTATCATCATCTTCTC TGTTTATTTGTGTAGAGTATGCGCCTAGAAATAATGAATTGATTTTGACACTGGCAAATTTTACTTCATTTGCAGTGCTA TAATGCTGCACAATACATCATCCATGATGCAGAATTGAAGTCTGCAAAGAACTGTGCTTCAGCGACCAGCGAGCAATCAA ATTCCTCAATCGGACTCATGATTGGAACTCCTTGTGAGGTTCTTCAATACATTCAAGAGGGGAATGTTGTTCCTGCTGAA TTAAGATACTTGGTTAGTATCACTTATAACATAGTGTCAGAATCTATGTAAAGTCTCTCAGTTTACCTGTCCTTTGGTGC TTCTAGCATTTATCTCATCTGCATTCATGTTTCTTAAATAGGTATTGGATGGCATGGATTGCTTGCTTAATAGTGGCCAT AGTCCTGAAATCCATAAAATTCTCAAACCATTACAAGATCATGGATCAACATCTACTGTCAAAAGATTGCAAACTATTTT GGCAATTTCAACCATTGCTGAGGTATGATGACCATTTATGTTGTTTTAGTATTTGGACTGTTGCATAACCGTAATGTACT TATGCCTCCATTTCGGTTTCTGGGTTTATCTTTTGTCATATGGGCAGGTTTTGGGTGAAGAATCCCCCCTTGTAAAGCGT CTAGAGCGTGATCATGCAGGAAATATTTCAGCGATGTCTTTAGAAATGGAGCCAACAGAAGTCTTTGATTTCTCTGAGTC TTTGGAAGCTCTTAGAAAAAAAGTGGCGGAGGCCATGAATTCCCTTTTGAAATAACAGTGCATCTTTTTCTAATGGTGCC TAAAATATGGCTAAAGAAAGTCAAAATAGGTTTTAAGATCTTTCTGATAGCAAGAGAAATGAGTTGATTGTTTTTGTAAA TATTTTATATGTGTTCTTTTAATTACAATATTTTCTTTTGTTTGTGACTGGTGTATCGGGAAACTGTGGCAGTCAATTCA AACAGAAGACCTTTTCAGGGGTTAAACTTGTGTCATCATCCTTATGAATAACTAACTATCCTTATGAATAACTAACTTGT GGATCAACACCCTATGAGTAGTGTACAATATTAACAAAGCCA
CDS sequence (LotjaGi2g1v0117100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAGACGAGTCAGAGAGCTTCTGAGCTTCTCGTATTTTCTGCACTCTCCAGGGAAGCGTAACCCACTCTCAAAACC AGCACCACCACCATCACACAATGCTAGTTTTCAAGGCTCCACCAGTACTTTCTCAACATCTTCCAAGTCCCAAAGGGATT CACTGCTTTTGGAACAGTTCAAGCAAAGGAAACTCAAAGGGTCCTCCTCAAAAGACCTAAAGGTGGATACTGCTGTTACT GCTGGTGAGAAGAAGGTGGTCCAAAAGGGTTTGCAGAATGAGAGTGAACCCACAATGGTGGTTGCAAATTTTAAGGAGTT GGGTGTGAGTGAGGAGCTTGTTGAGGTCATGGATGGGATTGGTGAATTTGTTCCTAGTGAGATACAGTGTGTGGTTATTC CAGCTATTTTGGAAGGAAAAAGTGTGCTCTTGAGTTCACCCTCTGATCATGACAGGACTTTGGCCTACTTGTTGCCCCTT ATTCAGCTGCTAAGACGGGATAGAGAGTTGCTTAGTTCAAATTCAAAGCATCCTCGAGCCATTGTGCTTTGTGCTTCGGA GGAGAAAGCTGCACAGTGCTATAATGCTGCACAATACATCATCCATGATGCAGAATTGAAGTCTGCAAAGAACTGTGCTT CAGCGACCAGCGAGCAATCAAATTCCTCAATCGGACTCATGATTGGAACTCCTTGTGAGGTTCTTCAATACATTCAAGAG GGGAATGTTGTTCCTGCTGAATTAAGATACTTGGTATTGGATGGCATGGATTGCTTGCTTAATAGTGGCCATAGTCCTGA AATCCATAAAATTCTCAAACCATTACAAGATCATGGATCAACATCTACTGTCAAAAGATTGCAAACTATTTTGGCAATTT CAACCATTGCTGAGGTTTTGGGTGAAGAATCCCCCCTTGTAAAGCGTCTAGAGCGTGATCATGCAGGAAATATTTCAGCG ATGTCTTTAGAAATGGAGCCAACAGAAGTCTTTGATTTCTCTGAGTCTTTGGAAGCTCTTAGAAAAAAAGTGGCGGAGGC CATGAATTCCCTTTTGAAATAA
Protein sequence (LotjaGi2g1v0117100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRRVRELLSFSYFLHSPGKRNPLSKPAPPPSHNASFQGSTSTFSTSSKSQRDSLLLEQFKQRKLKGSSSKDLKVDTAVT AGEKKVVQKGLQNESEPTMVVANFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPL IQLLRRDRELLSSNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATSEQSNSSIGLMIGTPCEVLQYIQE GNVVPAELRYLVLDGMDCLLNSGHSPEIHKILKPLQDHGSTSTVKRLQTILAISTIAEVLGEESPLVKRLERDHAGNISA MSLEMEPTEVFDFSESLEALRKKVAEAMNSLLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 8 | 16 | 9 | - | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| MobiDBLite | 19 | 50 | 32 | - | – | |
| Phobius | 22 | 353 | 332 | - | – | |
| MobiDBLite | 31 | 50 | 20 | - | – | |
| PANTHER | 35 | 351 | 317 | 2.0E-75 | – | |
| PANTHER | 35 | 351 | 317 | 2.0E-75 | – | |
| Gene3D | 46 | 301 | 256 | 1.2E-34 | – | |
| SUPERFAMILY | 95 | 290 | 196 | 1.67E-25 | ||
| ProSiteProfiles | 102 | 130 | 29 | 8.002 | ||
| CDD | 113 | 313 | 201 | 7.68969E-26 | – | |
| Pfam | 127 | 291 | 165 | 2.9E-18 | ||
| ProSiteProfiles | 133 | 314 | 182 | 14.829 | ||
| ProSiteProfiles | 279 | 353 | 75 | 8.701 | ||
| SMART | 292 | 351 | 60 | 8.6E-4 | ||
| SUPERFAMILY | 298 | 349 | 52 | 1.7E-8 | ||
| Gene3D | 302 | 353 | 52 | 2.4E-9 | – | |
| Pfam | 305 | 349 | 45 | 1.4E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi2g1v0117100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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