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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0129100 |
| Transcript ID | LotjaGi2g1v0129100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G29930.1 chlorophyll A/B binding protein 1; Swiss-Prot: sp|P07369|CB2G_SOLLC Chlorophyll a-b binding protein 3C, chloroplastic; TrEMBL-Plants: tr|Q1KLZ3|Q1KLZ3_9ROSI Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi2g1v0129100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:47130831..47133699) extracted from Lotus japonicus Gifu genome v1.2.
ATTAAACAAGAGGACAAAAGCAATGCTTCAAACCAATAGAAATTTGGATATAGATTTCATAAGATAAGGACATTTTTCAT CAGTGAAGCCATATATAATACCCATAACTCAACTATCCAGCATCAACAATAACCATTCTCTTCACATTCAATTATATATA TAGTTTTCAGCTAAGTTAATTGGCACTAGCATTATACAATGGCTACTTCAACAATGGCTGTCTCTTCTCCATCATTGGCT GGTCAGGCAATCAAGCTTGCCCCCTCCATTCAGGACACTGGAAGGATCACCATGAGAAAAACAACCACCAAATCCAAACC CGTTTCTTCTGGAAGTCCATGGTACGGCCCAGACCGTGTCAAATACTTGGGCCCATTCTCAGGTGAGTCCCCATCCTACC TCACTGGTGAATTCCCAGGCGACTATGGTTGGGACACTGCCGGACTTTCTGCTGACCCAGAGACATTTGCGAAAAACCGT GAACTTGAGGTCATTCACAGTAGATGGGCCATGTTGGGAGCCCTAGGCTGTGTCTTCCCCGAGCTCTTGGCCCGCAACGG TGTGAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGGTCCCAAATTTTCAGTGAAGGTGGACTTGACTACTTGGGTAACC CGAGCCTAGTCCATGCACAAAGCATTCTCGCAATCTGGGCCACCCAAGTTATCTTGATGGGTGCCGTTGAAGGTTACCGT ATTGCTGGTGGGCCACTTGGTGAGGTGACTGACCCACTGTACCCAGGTGGCAGCTTTGACCCATTGGGCCTTGCTGACGA CCCAGAAGCTTTTGCAGAATTGAAGGTGAAAGAACTAAAAAATGGTAGGTTAGCCATGTTCTCCATGTTTGGTTTCTTTG TTCAAGCTATTGTTACTGGAAAGGGACCTTTGGAGAACCTTGCAGACCACCTTGCTGACCCAGTCAACAACAATGCTTGG GCCTTTGCCACAAACTTTGTCCCTGGAAAGTAAGGAAAAGATACACCAAAACAGAATCTCATTTGTCATTTGGTAAAATG TATGTCTTAATTGTGCCTTTGCAAAGAATGTGAATTATAAATATATGTTTGGTCTATTTAGATTTCCTTTTCTGGTTTGT ATTGTGTATGAACCTCATTCACCAAGCACAATAATTTTGGCCTACTCTACACATAGAGAGAGCTGAGAATTTAAAGATAG ACTACTACACACATACCTTAATTTTGGCCTCCCAACATTTTCCTTGCATCCCAACCAAGACTATAATGCGTTCAGCTAAT CCAAGTAAAGAAGTTATGAATGACTGAACAAATTATGAACAAAAACAATTATTAGGAAATTAGATTCAGCGCTATATAAC TACCACATTCTTGATTCATAAAATTCCAAAGCCTCAATCAACTTTATTACATAAGTTGGAAGCTATCAAAGATTTCCTCA TCCTATAGGCTTTCGCTACGAGTCTCTATACAATAGCTCTAATTAGTGGGGAGGATCAGTAAGAAGTGAACAAAGAAATA TAGAACAAGATATGACCTATAGTAGATACTATTTTCTGCTATAGACAAGCATGTTACCAGAATTTAGCATAGTTCAAGCT AACATCTTGATTCTTGAGAGAGTCCATAAAGTCTCTTCCTTTTCCTATGTATTGCAAACTCCCAAGTGACTAGAAAGTGT AATAATTTTTTGTTGATAAGTTTTTAACATACAACCGAGATAGAATAAATAGTAGAAACCAATATAATTGTTCCCTTTAG CACAATTACTAAGTGACAAGTAGACCAAATGGGAGAAATGCAAGACTTATCTTGAAGCCCTCTGCCAAAACAATTGGACA TGCTCTCTCTTTCCCAACTTAAAATCTGTCACACACATTATGACATTCCAATTCCACATCAAAATCTAAACACATAATCT GAAAAAGTGCATCACCTTGCTTCCCCTTTTCAAACTGTTTTCAGGACATTTTTCTTTAATGCCTCAATTCAATAATAACA ATAAATACAATTTCCAGCAAGGCAAAGAGGAAAATCACAAATGAAAATAGTATGAAGTGATCTAGTCATTAGAGCTAAAA CTCTAGTAGAAAGCCACCAACACATATTAATCACATAAAAATTAGTATGAAGCTACCGGTTTGTCATGTCTTGCTGCCTT TAAACAACAACAACATTATTCTTATAAGAGTAAAAATTTAGTCAAGAATACATACTACTTCATCGAAATCATTCTTATAC CGGTTCCTGTCAGCACTAGCTAGGCTTAGCAACTTCCAAAGGAGATTTCTTTGAACTAAACATTCTCTCTCTTCTTGCAA AATTGAGTCACAGGCAGATTGAAGTGAACTGCTCAAAGAAAAAGGAACAATAGTCCAGCATGTTTCAGCCACTGTTACAT TACAACACTAAGCAAAAGGAACCCACATAACAAATTCTTAGAAAGCTCTTAAACTGAGACAGAAGACATAATTAATTACC AGGATAAGTATATTAATAGCAAGCTCTTTAGAAGATGAAGAAAAATCAAAAGGAGAAAAGAATAATATAAAGGAAGACAG GAAGAAGAATAAGTGGACATTACATGTAAGCCACTATAGTTAGCAACAACAACAAAATAGGGAATGATTGAAGATCCTAA ATCAAGATTATCAAAAGGAGAGATTAACTAGTACGCTGGTGAATTGAAGCAATGTTAGTCGAAGCAAAATCCCGCAGCTA CAATAAATCAGTATATGGGTTTATGGGACATAGGATGTAGAATTAAGATGCCTGGACCTAACCTTTGCTTCGAGAAAAAG GGCACTCGGTGATTCAATTGAAGACTCCGTCAAAATGCACGACAATGCATATAAGAACCGCAATTAAGG
CDS sequence (LotjaGi2g1v0129100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACTTCAACAATGGCTGTCTCTTCTCCATCATTGGCTGGTCAGGCAATCAAGCTTGCCCCCTCCATTCAGGACAC TGGAAGGATCACCATGAGAAAAACAACCACCAAATCCAAACCCGTTTCTTCTGGAAGTCCATGGTACGGCCCAGACCGTG TCAAATACTTGGGCCCATTCTCAGGTGAGTCCCCATCCTACCTCACTGGTGAATTCCCAGGCGACTATGGTTGGGACACT GCCGGACTTTCTGCTGACCCAGAGACATTTGCGAAAAACCGTGAACTTGAGGTCATTCACAGTAGATGGGCCATGTTGGG AGCCCTAGGCTGTGTCTTCCCCGAGCTCTTGGCCCGCAACGGTGTGAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGGT CCCAAATTTTCAGTGAAGGTGGACTTGACTACTTGGGTAACCCGAGCCTAGTCCATGCACAAAGCATTCTCGCAATCTGG GCCACCCAAGTTATCTTGATGGGTGCCGTTGAAGGTTACCGTATTGCTGGTGGGCCACTTGGTGAGGTGACTGACCCACT GTACCCAGGTGGCAGCTTTGACCCATTGGGCCTTGCTGACGACCCAGAAGCTTTTGCAGAATTGAAGGTGAAAGAACTAA AAAATGGTAGGTTAGCCATGTTCTCCATGTTTGGTTTCTTTGTTCAAGCTATTGTTACTGGAAAGGGACCTTTGGAGAAC CTTGCAGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCCTTTGCCACAAACTTTGTCCCTGGAAAGTAA
Protein sequence (LotjaGi2g1v0129100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATSTMAVSSPSLAGQAIKLAPSIQDTGRITMRKTTTKSKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDT AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIW ATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN LADHLADPVNNNAWAFATNFVPGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 264 | 264 | 7.4E-174 | – | |
| PANTHER | 1 | 264 | 264 | 7.4E-174 | ||
| SUPERFAMILY | 47 | 261 | 215 | 7.19E-79 | – | |
| Gene3D | 55 | 257 | 203 | 4.5E-98 | ||
| Pfam | 65 | 230 | 166 | 1.2E-49 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Photosynthesis, light harvesting | Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi2g1v0129100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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