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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0134300 |
| Transcript ID | LotjaGi2g1v0134300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Extensin; TAIR: AT1G21310.1 extensin 3; Swiss-Prot: sp|Q9FS16|EXTN3_ARATH Extensin-3; TrEMBL-Plants: tr|A0A176WBI8|A0A176WBI8_MARPO Uncharacterized protein; Found in the gene: LotjaGi2g1v0134300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:48680136..48683614) extracted from Lotus japonicus Gifu genome v1.2.
CAATGATTTATTCCAAGGAGGCCCAATGCTCTAATTATTTCAGATTTTTCATGAAGTGAAACGTAATTATATGGAGTCAA AATTCACCAACCAATGTCAAAAGTTTGTGTTAAATTGGTAAAGAAAAAACTATATAAAGGGTGACACTCTATTCCTGATA GCAGTACCAAAACCCACTTCAGGGGAAAATGGGGTCTCTCATGGCCTCTATTACTCTAACTCTTGCATTAGCAATAGTCT CTCTAAGCTTGCCAAACCAGGTTTCAGCAAACAGCTACATTTATTCATCTCCACCACCACCAAAGAAGCCTTACTATTAT CACTCTCCGCCACCACCAGTGCACTCACCTCCTCCTCCATATCATTACTCTTCACCACCACCTCCACCAAAGAAGCCATA CAAGTACCCTTCTCCTCCACCACCAGTTTACAAGTATAAGTCTCCACCCCCACCAGTTTATAAGTATAAGTCCCCACCAC CACCACCTAAGAAGCCATACAAATACCCATCTCCTCCACCACCAGTTTACAAATACAAGTCTCCACCACCACCAGTTTAC AAGTATAAGTCTCCTCCTCCTCCACCAAAGAAGCCATACAAATACCCTTCACCTCCACCACCAGTTTATAAATACAAGTC TCCTCCACCACCACCAAAGAAGCCATACAAGTATGCTTCACCTCCACCTCCAGTTTATAAGTACAAATCTCCACCACCAC CAGTCTACAAGTACAAGTCTCCTCCACCTCCAGCAAAGAAACCATACAAGTACCATTCCCCTCCACCACCAGTTTATAAG TACAAGTCTCCACCACCACCAGCTTACTATTACAAATCTCCTCCACCTCCACCAAAGAAGCCATACAAGTACTCATCTCC TCCACCACCCCCATACAAGTACTCATCTCCTCCTCCTCCACCATACAAGTATTCATCCCCTCCACCACCCCCTTACAAGT ACTCATCCCCTCCACCACCGCCATATAAGTACTCATCTCCTCCTCCTCCACCTTACAAGTACTCATCTCCCCCACCACCT CCGTACAAGTACTCATCTCCTCCTCCTCCACCCTACAAGTACTCATCTCCTCCACCACCCCCGTACAAGTACTCATCCCC TCCTCCTCCACCTTACAAGTACTCATCTCCTCCACCACCCCCGTACAAGTACTCATCCCCTCCTCCTCCACCATACAAGT ACTCATCTCCTCCACCACCCCCGTACAAGTACTCATCCCCTCCTCCTCCACCATACAAGTACTCATCTCCTCCACCACCG GTCTACAAGTATAAGTCCCCTCCTCCTCCACCTCCTTACCATTACTCTTCACCCCCACCACCACCAAAGAAGCCCTACAA ATACTCATCTCCTCCACCCCCAGTTTACAAATACAAGTCTCCTCCTCCTCCTGTCCATTCACCACCTCCACCACATTATG TATATTCATCACCTCCTCCTCCCGTCCATTCCCCACCTCCACCACATTACATCTATGCTTCACCTCCTCCCCCTTACCAC TACTAGATAGTGGTTTAGCATAGCATCTCATGGTAAGCTTCTTCGTGCAACCTATATTATCATGTGTGACATTTTACAAA TTAAGTTTCATTCGAATAATATATCTACAAAGTTACAATATCTGTCCAGGGTCGGCCCTGGGCCCGTGCAAGCAGGCCCA CAACCCAGGGCCTCCAAAAAAGAAGGGGTCACAAAAAAAATTCGAATACTTTTTACAGCGTTTTTACTTAAAAAAGCGCT GTAAATAGTCAATCTTTTACAGCGCTTCATACCGCTGTATACTATTTAACAGCGGCGAGAGGTTCGAAGCGCTGTAAAAA GCCCTTTTTTTGGCTTAGTGATTCTATTAAACTTTCTCCAAAAAAAATTTAGTGGTCCATTTTTATTATTAACCCAGGGC CTCCAAAATGTCGGGACCGGCCCTGTATCTGTCTATTCAGCAGTTCCATGGTTAACCATATTAAAAACCAATTTTCCCAT GTAAACCATATTTTATGATTAAAATTTAATACATATTATTTATAATATAGTTGTTACGTGTTAAAATTAATACGCAAAGA AAATTAAACTCCTAACTTTTTTAAACCAAAAGATATTATATTATTAACAACAAACCTCGAGACTATCATTTTCAAATTGA TGTAATTTTCTATTCAATTTACCCAATCCATGGCCAAATATGAATCTCTCTCAATAATCACATTGGTGATATTATGAACT GCATGTTTTTTTTTTTCATGGTAGAGAAAGCCGTCTCTATTTCTCTAGTATAAATAAATAAATAAAACATAATTTCAACA AAATTATTTTAGTTTAAATGCTTGGTTGCATTACCCATTTCAAGAGTTGTGATAATCTTACATATATATATATATATATA TATATATATATATATATATATATATATTATATTTGTTTTATACATATTTCTCAACTCCTATCATATCATATATTATATTC ATTATTTCTCTTTTTAAATTAATTATTATTAACACTACTTGAGTTTCACTTTTCTCCCTAATAATCTAAAGTATACATAT CTCTCTGATTTATCAATATTAATGACAGGGACTGATATATCCATGTGTATGTACTTATGTAGGATTTGAAGTATATTTGC AAATAAGAACATAGTGGACAGGAGGAAGATGCACTTCGCAATGACCCAAAAGGAAAACAACGGAAGCAAAGTTTCCGCGT ATTTTGTCTTTTAGAAAAGAAATTAAGAAGTGCCACTCCTTTTCTCTTTGTTTGTTTTATTCAATTATTATTGTGTATTT AGACAGTTGCAAGGCACTACTTTTGCAATACTGTCATTGAATTTTCATGAATGTATTTTTGTTCGATACTTAATAAGTTT GAGAGGAGTTGTGAAGCCATGACTATAATAAAATAAATAATATATCTTTTTGTCTTACGCTTGAACTACAGTGGGAACTT TCTTTTTAAGCAAAACAGTATTTCTTAATAGATGAAAATCTTGAGGCCTCCTTCAAGCAGGTTAAATGTATTCTTAGCAA CAGGGGTATCCAGGAATTTTTTTTGTTGCGAGGGCTGAAATTAAGGACTAAAAAAATTTCACTGGATATTGCATCAACTA ATAACAAAATTTATTTGATTACAACTCTTCGTTCTTTAATAATAATAAATTTATTTATTATATATTATTGCATCAACTAT GATTTTTTTAGCAATTTCTCGCTTAAATGTATACAACTACTACATTTTTAAGAAGATAATATCCAATCTTGTTGCACATT CGAGTCTTAACAACTTTAATTGCAAAAAAAGATTGTTATATAATTAATACTATTGAAATAGGAAATTCCAAGACAAGACA TATCAATATAGCTGAAAGAAAAAGATCAGTAGACATTTTTCCTAAATTAAGATCTCGAGAAACATTTGAATAATATTATC TTTGCTGAAATGACAAATTTATATCATAGTTGTAAGGGC
CDS sequence (LotjaGi2g1v0134300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTCTCTCATGGCCTCTATTACTCTAACTCTTGCATTAGCAATAGTCTCTCTAAGCTTGCCAAACCAGGTTTCAGC AAACAGCTACATTTATTCATCTCCACCACCACCAAAGAAGCCTTACTATTATCACTCTCCGCCACCACCAGTGCACTCAC CTCCTCCTCCATATCATTACTCTTCACCACCACCTCCACCAAAGAAGCCATACAAGTACCCTTCTCCTCCACCACCAGTT TACAAGTATAAGTCTCCACCCCCACCAGTTTATAAGTATAAGTCCCCACCACCACCACCTAAGAAGCCATACAAATACCC ATCTCCTCCACCACCAGTTTACAAATACAAGTCTCCACCACCACCAGTTTACAAGTATAAGTCTCCTCCTCCTCCACCAA AGAAGCCATACAAATACCCTTCACCTCCACCACCAGTTTATAAATACAAGTCTCCTCCACCACCACCAAAGAAGCCATAC AAGTATGCTTCACCTCCACCTCCAGTTTATAAGTACAAATCTCCACCACCACCAGTCTACAAGTACAAGTCTCCTCCACC TCCAGCAAAGAAACCATACAAGTACCATTCCCCTCCACCACCAGTTTATAAGTACAAGTCTCCACCACCACCAGCTTACT ATTACAAATCTCCTCCACCTCCACCAAAGAAGCCATACAAGTACTCATCTCCTCCACCACCCCCATACAAGTACTCATCT CCTCCTCCTCCACCATACAAGTATTCATCCCCTCCACCACCCCCTTACAAGTACTCATCCCCTCCACCACCGCCATATAA GTACTCATCTCCTCCTCCTCCACCTTACAAGTACTCATCTCCCCCACCACCTCCGTACAAGTACTCATCTCCTCCTCCTC CACCCTACAAGTACTCATCTCCTCCACCACCCCCGTACAAGTACTCATCCCCTCCTCCTCCACCTTACAAGTACTCATCT CCTCCACCACCCCCGTACAAGTACTCATCCCCTCCTCCTCCACCATACAAGTACTCATCTCCTCCACCACCCCCGTACAA GTACTCATCCCCTCCTCCTCCACCATACAAGTACTCATCTCCTCCACCACCGGTCTACAAGTATAAGTCCCCTCCTCCTC CACCTCCTTACCATTACTCTTCACCCCCACCACCACCAAAGAAGCCCTACAAATACTCATCTCCTCCACCCCCAGTTTAC AAATACAAGTCTCCTCCTCCTCCTGTCCATTCACCACCTCCACCACATTATGTATATTCATCACCTCCTCCTCCCGTCCA TTCCCCACCTCCACCACATTACATCTATGCTTCACCTCCTCCCCCTTACCACTACTAG
Protein sequence (LotjaGi2g1v0134300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSLMASITLTLALAIVSLSLPNQVSANSYIYSSPPPPKKPYYYHSPPPPVHSPPPPYHYSSPPPPPKKPYKYPSPPPPV YKYKSPPPPVYKYKSPPPPPKKPYKYPSPPPPVYKYKSPPPPVYKYKSPPPPPKKPYKYPSPPPPVYKYKSPPPPPKKPY KYASPPPPVYKYKSPPPPVYKYKSPPPPAKKPYKYHSPPPPVYKYKSPPPPAYYYKSPPPPPKKPYKYSSPPPPPYKYSS PPPPPYKYSSPPPPPYKYSSPPPPPYKYSSPPPPPYKYSSPPPPPYKYSSPPPPPYKYSSPPPPPYKYSSPPPPPYKYSS PPPPPYKYSSPPPPPYKYSSPPPPPYKYSSPPPPPYKYSSPPPPVYKYKSPPPPPPYHYSSPPPPPKKPYKYSSPPPPVY KYKSPPPPVHSPPPPHYVYSSPPPPVHSPPPPHYIYASPPPPYHY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 27 | 27 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 27 | 8 | - | – | |
| PANTHER | 26 | 155 | 130 | 3.5E-55 | – | |
| PANTHER | 26 | 155 | 130 | 3.5E-55 | – | |
| Pfam | 27 | 66 | 40 | 1.7E-4 | ||
| Phobius | 28 | 445 | 418 | - | – | |
| PRINTS | 33 | 49 | 17 | 3.9E-9 | – | |
| PRINTS | 54 | 66 | 13 | 3.9E-9 | – | |
| Pfam | 57 | 99 | 43 | 4.6E-5 | ||
| PRINTS | 67 | 88 | 22 | 3.9E-9 | – | |
| Pfam | 93 | 132 | 40 | 6.5E-6 | ||
| PRINTS | 94 | 110 | 17 | 3.9E-9 | – | |
| PANTHER | 120 | 234 | 115 | 3.5E-55 | – | |
| PANTHER | 120 | 234 | 115 | 3.5E-55 | – | |
| MobiDBLite | 125 | 145 | 21 | - | – | |
| Pfam | 149 | 188 | 40 | 1.2E-6 | ||
| MobiDBLite | 150 | 169 | 20 | - | – | |
| Pfam | 176 | 221 | 46 | 2.5E-6 | ||
| Pfam | 190 | 234 | 45 | 1.6E-5 | ||
| PANTHER | 192 | 334 | 143 | 3.5E-55 | – | |
| PANTHER | 192 | 334 | 143 | 3.5E-55 | – | |
| MobiDBLite | 220 | 352 | 133 | - | – | |
| PANTHER | 275 | 443 | 169 | 3.5E-55 | – | |
| PANTHER | 275 | 443 | 169 | 3.5E-55 | – | |
| Pfam | 343 | 385 | 43 | 3.0E-5 | ||
| MobiDBLite | 373 | 393 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of cell wall | The action of a molecule that contributes to the structural integrity of a cell wall. | ||
| Biological process | Plant-type cell wall organization | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. |
Expression pattern of LotjaGi2g1v0134300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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