Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0134300 |
| Transcript ID | LotjaGi2g1v0134300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | extensin 3; TAIR: AT1G21310.1 extensin 3; Swiss-Prot: sp|Q9FS16|EXTN3_ARATH Extensin-3; TrEMBL-Plants: tr|A0A176WBI8|A0A176WBI8_MARPO Uncharacterized protein; Found in the gene: LotjaGi2g1v0134300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:48682089..48683426) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGTCTCTCATGGCCTCTATTACTCTAACTCTTGCATTAGCAATAGTCTCTCTAAGCTTGCCAAACCAGGTTTCAGC AAACAGCTACATTTATTCATCTCCACCACCACCAAAGAAGCCTTACTATTATCACTCTCCGCCACCACCAGTGCACTCAC CTCCTCCTCCATATCATTACTCTTCACCACCACCTCCACCAAAGAAGCCATACAAGTACCCTTCTCCTCCACCACCAGTT TACAAGTATAAGTCTCCACCCCCACCAGTTTATAAGTATAAGTCCCCACCACCACCACCTAAGAAGCCATACAAATACCC ATCTCCTCCACCACCAGTTTACAAATACAAGTCTCCACCACCACCAGTTTACAAGTATAAGTCTCCTCCTCCTCCACCAA AGAAGCCATACAAATACCCTTCACCTCCACCACCAGTTTATAAATACAAGTCTCCTCCACCACCACCAAAGAAGCCATAC AAGTATGCTTCACCTCCACCTCCAGTTTATAAGTACAAATCTCCACCACCACCAGTCTACAAGTACAAGTCTCCTCCACC TCCAGCAAAGAAACCATACAAGTACCATTCCCCTCCACCACCAGTTTATAAGTACAAGTCTCCACCACCACCAGCTTACT ATTACAAATCTCCTCCACCTCCACCAAAGAAGCCATACAAGTACTCATCTCCTCCACCACCCCCATACAAGTACTCATCT CCTCCTCCTCCACCATACAAGTATTCATCCCCTCCACCACCCCCTTACAAGTACTCATCCCCTCCACCACCGCCATATAA GTACTCATCTCCTCCTCCTCCACCTTACAAGTACTCATCTCCCCCACCACCTCCGTACAAGTACTCATCTCCTCCTCCTC CACCCTACAAGTACTCATCTCCTCCACCACCCCCGTACAAGTACTCATCCCCTCCTCCTCCACCTTACAAGTACTCATCT CCTCCACCACCCCCGTACAAGTACTCATCCCCTCCTCCTCCACCATACAAGTACTCATCTCCTCCACCACCCCCGTACAA GTACTCATCCCCTCCTCCTCCACCATACAAGTACTCATCTCCTCCACCACCGGTCTACAAGTATAAGTCCCCTCCTCCTC CACCTCCTTACCATTACTCTTCACCCCCACCACCACCAAAGAAGCCCTACAAATACTCATCTCCTCCACCCCCAGTTTAC AAATACAAGTCTCCTCCTCCTCCTGTCCATTCACCACCTCCACCACATTATGTATATTCATCACCTCCTCCTCCCGTCCA TTCCCCACCTCCACCACATTACATCTATGCTTCACCTCCTCCCCCTTACCACTACTAG
CDS sequence (LotjaGi2g1v0134300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTCTCTCATGGCCTCTATTACTCTAACTCTTGCATTAGCAATAGTCTCTCTAAGCTTGCCAAACCAGGTTTCAGC AAACACATACAAGTACCCTTCTCCTCCACCACCAGTTTACAAGTATAAGTCTCCACCCCCACCAGTTTATAAGTATAAGT CCCCACCACCACCACCTAAGAAGCCATACAAATACCCATCTCCTCCACCACCAGTTTACAAATACAAGTCTCCACCACCA CCAGTTTACAAGTATAAGTCTCCTCCTCCTCCACCAAAGAAGCCATACAAGTATGCTTCACCTCCACCTCCAGTTTATAA GTACAAATCTCCACCACCACCAGTCTACAAGTACAAGTCTCCTCCACCTCCAGCAAAGAAACCATACAAGTACCATTCCC CTCCACCACCAGTTTATAAGTACAAGTCTCCACCACCACCAGCTTACTATTACAAATCTCCTCCACCTCCACCAAAGAAG CCATACAAGTACTCATCTCCTCCACCACCCCCATACAAGTACTCATCTCCTCCTCCTCCACCATACAAGTATTCATCCCC TCCACCACCCCCTTACAAGTACTCATCCCCTCCACCACCGCCATATAAGTACTCATCTCCTCCTCCTCCACCTTACAAGT ACTCATCTCCCCCACCACCTCCACCACATTACATCTATGCTTCACCTCCTCCCCCTTACCACTACTAG
Protein sequence (LotjaGi2g1v0134300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSLMASITLTLALAIVSLSLPNQVSANTYKYPSPPPPVYKYKSPPPPVYKYKSPPPPPKKPYKYPSPPPPVYKYKSPPP PVYKYKSPPPPPKKPYKYASPPPPVYKYKSPPPPVYKYKSPPPPAKKPYKYHSPPPPVYKYKSPPPPAYYYKSPPPPPKK PYKYSSPPPPPYKYSSPPPPPYKYSSPPPPPYKYSSPPPPPYKYSSPPPPPYKYSSPPPPPPHYIYASPPPPYHY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 27 | 27 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 27 | 8 | - | – | |
| PANTHER | 22 | 137 | 116 | 1.6E-31 | – | |
| PANTHER | 22 | 137 | 116 | 1.6E-31 | – | |
| Phobius | 28 | 235 | 208 | - | – | |
| Pfam | 28 | 58 | 31 | 3.1E-5 | ||
| Pfam | 50 | 91 | 42 | 2.3E-6 | ||
| Pfam | 83 | 124 | 42 | 3.8E-7 | ||
| PANTHER | 83 | 235 | 153 | 1.6E-31 | – | |
| PANTHER | 83 | 235 | 153 | 1.6E-31 | – | |
| MobiDBLite | 86 | 105 | 20 | - | – | |
| Pfam | 116 | 157 | 42 | 2.1E-7 | ||
| Pfam | 145 | 190 | 46 | 2.6E-4 | ||
| MobiDBLite | 156 | 216 | 61 | - | – | |
| Pfam | 158 | 200 | 43 | 1.7E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of cell wall | The action of a molecule that contributes to the structural integrity of a cell wall. | ||
| Biological process | Plant-type cell wall organization | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. |
Expression pattern of LotjaGi2g1v0134300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…