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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0136300 |
| Transcript ID | LotjaGi2g1v0136300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic aspartyl protease family protein; TAIR: AT4G35880.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp|Q8VYV9|APF1_ARATH Aspartyl protease family protein 1; TrEMBL-Plants: tr|A0A151T3Z2|A0A151T3Z2_CAJCA Aspartic proteinase-like protein 1; Found in the gene: LotjaGi2g1v0136300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:50008759..50011972) extracted from Lotus japonicus Gifu genome v1.2.
CACCCCTGATCTTTTCAAATTGGAGCCAAATAACATTTACTCATCAAACACAGAGTCACAACACCAACACCAGTGTTTCA GTTCAAAATCTTCATCCCACACCTCTCATCACATCACCACTCACTGATTTATGCTTTTCAAATCTTTCTCCTGTGGGTTG AAGAAAATGCTCAGTTTATGCAGGATGATTACGATTTTCCTTTTCTTGCTCTCCGTTTGTGGGTGCTGCCACGGCCAAAT CTACACCTTCACCATGTACCACCGCTACTCTGAGCCCGTCAAGAAGTGGTGCCACTCCGCTACCGAAACCCTAGAAAAAG GGAACTGTGAGTACTACGCTGAGTTGGCCGACCGCGACCGCACCAGACTCTCTTTCTCCGGCGGGAACTCCTCCACCTTC CGCATCAATTCGCTAGGATTGTATGTACGATTCCCTTTGTTTTTATTCTCAGTCATTAATATACCTGTAGGCTCTGGTTG GTTGAGTTGTGTTGCCTTGCGGATTCTTCGGTCTTTTTGATGCTGTTGGTAATGGCTTCTCAGCTTGAAACATTGCTCTA AGAAAACGAAATCACAAGTGGTTGGCGTTTAGCCCTTCTTTCTTGTTGGATTATTAGACAAAATTTTGTGGATTATTTTT TTATTGATTGGATTGAATTGAATCTTGACATCTCTGTCTGTTGTGCAGTTTGCATTATGCAACTGTTCAATTAGGGACAC CGGGTGTGAAGTTCATGGTGGCGCTTGATACAGGAAGTGACCTGTTCTGGGTACCCTGTGATTGTGTCAGATGTGCATCC TTGGATAGCACAGCCTATGGTTCAGTAAGCTCTGATGAGTACCGGAGTATCTTTGATGAGATGATTATTATGTTGTAAAT TTATGCTGCTATTGTTTTGTTTCTGAATGAAAATCCACATTGCAGGATTTTGACCTTAGTACGTATAGTCCTAGTAGATC TTCCACAAGCAAAAAGGTCACTTGTAACAGTAGTTTGTGTATGAACCACAACCAATGCCATGGGGCATTCAGCAACTGCT CTTACATGGTCTCTTATGCCTCTGCCGAAACGTCTACGTCAGGAATACTAGTGGAGGACGTTCTGCACTTTACGGATGGC GATAATCACCATATTGAAGCTAATGTCATGTTCGGGTTAGTTTCCTTGCTAAGTAACTAAAATTGATCAATTTCAGCTTT TTTCGAGATACATGTAAGAACTAAGAACTGGCAACTAAAGTCAATGCACATGTTGCAGATGTGGACAAGTTCAGAGCGGA TCATTCTTAGATGTTGCTGCTCCAAACGGTTTGTTTGGGCTTGGCATGGAGAATATATCAGTTCCTAGCATGTTGTCAAG GCAAGGCTTTACAGCGGATTCGTTCTCCATGTGTTTTGGACGTAGTGGTGTTGGCAGGATAAGTTTTGGTGACAAGGGAA GTCTTGATCAAGATGAGACTCCATTTAATCTGAACCCATCCCAGTAAGTGGTGATTCCCTTTTACTTGCATCGGATCATC TGAATTTAAAGTATGATAAATGATTGTAAATATACCACCTCTTATGTCACAGCCCCACCTACAACATCACCGTCACCCAA GTCCGTGTAGGAACATCTCTAATTGATTTGGAATTCACTGCTCTCTTTGATTCGGGGACCTCCTTCACATTATTGGTTGA TCCAACCTATACAAATATCTCTGAGAGTGTAAGTTATAAAAAGGGCAAAAATCTGCTTACATTTAGCATAAATGTTATTT GAATTTTGAAGACAAAATGGCCCATGTGTTTTTAATTTTTATTGCAGTTTCATTCCCAAGTACAAGATAGGCGGCACCCT TTTGATTCGAGAATTCCTTTTGAATATTGTTATGATATGAGGTTATAAGATTCCATTTCTTGCTATTTCATATGAATATT TTTTACTCTAAAGCTAAATAATATTTCTTGTGAATGGACAGTCCTAATGCAAATACCAGCTTGCTCCCTAGCATGAGTTT AGTTATGGGAGGCGGAAGCCATTTTGCTGTGTTTGATCCTATAAAGATTATCTCTAATCAGGTGGTAATGCAAGCTGGAT ACACCTTCAATAAATGTTATTTTTGAATATAAGTAAGATGTTCCTTCTGTTATTTTTACAGAGGGTGCATGTATATTGTC TAGCAATTGTGAAGATGAAAAGTGCTGAGCTTAACATAATTGGACGTAAGTCTCTTGCACTTTCTGAATGTGATGTGTTC CCAATTTGGTATATTTTAAGAACATGATGTGAAATAAGTAAAACTGGGGGCAAGTTAAGAAGAATATTTTGTTTGAGATT AAATTGAACAAAACATAAGATAGGTCTTCTTGACTGTGAGTGTCTTGGTCTTTAAATGTATATGATAATTGCTTATGCCT CGATTTTGTATGTCTATTGCAGAAAACTTTATGACGGGTTACCATGTTGTATTTGACCGGGAAAAGCTCATATTGGGATG GAAACAATCAAATTGTAAGTGTTCAGTTCTTTTCACCGTTTCTACTTTCTACTCATTGGTTATGTGCTGAGATTAGTCAT TCTACCTCTGAGCTTTTATTCAAAGGAAAAACAGTAGTAATACCTTGAATCCTTGAACAGGTTATGATGACATTGAGGAT CATAATGCTGTATCAATAGGACCACACTCAAATAATGTGCCTCCTACTTTCACCACCGGTCTTGGCAATTACCCGGAAAC TAGAAAGACTAAATACAATTCTCAACGGTCAACTGCATCACCGTCGTCGCATTGCAGCTTCAGATTTGTATTATTTTGTT TTGTTTACATGTTTGGGGGTCATTTATTTGTATATACTGGTGGTTAATCTCTTTTCCGAGTCTTGGTTTGTTCAATAGGC TTCGTTCTATTTTCCTCGAGCTTCGGAATTGGGTGCATTGGTGCCAACCATTGGAGTTTAATCTCTTCGCTGAGTGTTGG TTTATGTCTGTGTCCGCCATCATAGACGTTTGATGGTTCAGATGCTTCATCTTTATTCTCATATGATGTTGTTTGAAATC CTTGGTGGTTAAACGATAGTACACAGTAAACTGAGTAAAGTAAGGAAATTTTTGAAAAATTAATGCTTTTCAAATCTGGC ATAGCACCAAGATAATGATGTATAGGGTTAATTGCATTTTTCGTCCCTGAAGTTAGACCAATGTGTAATTTGAATCTCCT TTGTTTAATACGAG
CDS sequence (LotjaGi2g1v0136300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTTCAAATCTTTCTCCTGTGGGTTGAAGAAAATGCTCAGTTTATGCAGGATGATTACGATTTTCCTTTTCTTGCT CTCCGTTTGTGGGTGCTGCCACGGCCAAATCTACACCTTCACCATGTACCACCGCTACTCTGAGCCCGTCAAGAAGTGGT GCCACTCCGCTACCGAAACCCTAGAAAAAGGGAACTGTGAGTACTACGCTGAGTTGGCCGACCGCGACCGCACCAGACTC TCTTTCTCCGGCGGGAACTCCTCCACCTTCCGCATCAATTCGCTAGGATTTTTGCATTATGCAACTGTTCAATTAGGGAC ACCGGGTGTGAAGTTCATGGTGGCGCTTGATACAGGAAGTGACCTGTTCTGGGTACCCTGTGATTGTGTCAGATGTGCAT CCTTGGATAGCACAGCCTATGGTTCAGATTTTGACCTTAGTACGTATAGTCCTAGTAGATCTTCCACAAGCAAAAAGGTC ACTTGTAACAGTAGTTTGTGTATGAACCACAACCAATGCCATGGGGCATTCAGCAACTGCTCTTACATGGTCTCTTATGC CTCTGCCGAAACGTCTACGTCAGGAATACTAGTGGAGGACGTTCTGCACTTTACGGATGGCGATAATCACCATATTGAAG CTAATGTCATGTTCGGATGTGGACAAGTTCAGAGCGGATCATTCTTAGATGTTGCTGCTCCAAACGGTTTGTTTGGGCTT GGCATGGAGAATATATCAGTTCCTAGCATGTTGTCAAGGCAAGGCTTTACAGCGGATTCGTTCTCCATGTGTTTTGGACG TAGTGGTGTTGGCAGGATAAGTTTTGGTGACAAGGGAAGTCTTGATCAAGATGAGACTCCATTTAATCTGAACCCATCCC ACCCCACCTACAACATCACCGTCACCCAAGTCCGTGTAGGAACATCTCTAATTGATTTGGAATTCACTGCTCTCTTTGAT TCGGGGACCTCCTTCACATTATTGGTTGATCCAACCTATACAAATATCTCTGAGAGTTTTCATTCCCAAGTACAAGATAG GCGGCACCCTTTTGATTCGAGAATTCCTTTTGAATATTGTTATGATATGAGTCCTAATGCAAATACCAGCTTGCTCCCTA GCATGAGTTTAGTTATGGGAGGCGGAAGCCATTTTGCTGTGTTTGATCCTATAAAGATTATCTCTAATCAGAGGGTGCAT GTATATTGTCTAGCAATTGTGAAGATGAAAAGTGCTGAGCTTAACATAATTGGACAAAACTTTATGACGGGTTACCATGT TGTATTTGACCGGGAAAAGCTCATATTGGGATGGAAACAATCAAATTGTTATGATGACATTGAGGATCATAATGCTGTAT CAATAGGACCACACTCAAATAATGTGCCTCCTACTTTCACCACCGGTCTTGGCAATTACCCGGAAACTAGAAAGACTAAA TACAATTCTCAACGGTCAACTGCATCACCGTCGTCGCATTGCAGCTTCAGATTTGTATTATTTTGTTTTGTTTACATGTT TGGGGGTCATTTATTTGTATATACTGGTGGTTAA
Protein sequence (LotjaGi2g1v0136300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLFKSFSCGLKKMLSLCRMITIFLFLLSVCGCCHGQIYTFTMYHRYSEPVKKWCHSATETLEKGNCEYYAELADRDRTRL SFSGGNSSTFRINSLGFLHYATVQLGTPGVKFMVALDTGSDLFWVPCDCVRCASLDSTAYGSDFDLSTYSPSRSSTSKKV TCNSSLCMNHNQCHGAFSNCSYMVSYASAETSTSGILVEDVLHFTDGDNHHIEANVMFGCGQVQSGSFLDVAAPNGLFGL GMENISVPSMLSRQGFTADSFSMCFGRSGVGRISFGDKGSLDQDETPFNLNPSHPTYNITVTQVRVGTSLIDLEFTALFD SGTSFTLLVDPTYTNISESFHSQVQDRRHPFDSRIPFEYCYDMSPNANTSLLPSMSLVMGGGSHFAVFDPIKIISNQRVH VYCLAIVKMKSAELNIIGQNFMTGYHVVFDREKLILGWKQSNCYDDIEDHNAVSIGPHSNNVPPTFTTGLGNYPETRKTK YNSQRSTASPSSHCSFRFVLFCFVYMFGGHLFVYTGG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 35 | 35 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 35 | 35 | - | – | |
| SignalP_EUK | 1 | 35 | 35 | - | – | |
| ProSiteProfiles | 1 | 32 | 32 | 5.0 | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 20 | 30 | 11 | - | – | |
| Phobius | 31 | 35 | 5 | - | – | |
| Phobius | 36 | 494 | 459 | - | – | |
| PANTHER | 60 | 460 | 401 | 1.3E-165 | – | |
| PANTHER | 60 | 460 | 401 | 1.3E-165 | ||
| Gene3D | 86 | 277 | 192 | 3.1E-42 | ||
| SUPERFAMILY | 92 | 445 | 354 | 2.26E-85 | ||
| ProSiteProfiles | 99 | 439 | 341 | 38.196 | ||
| Pfam | 100 | 277 | 178 | 1.2E-36 | ||
| PRINTS | 105 | 125 | 21 | 1.9E-9 | ||
| ProSitePatterns | 114 | 125 | 12 | - | ||
| Gene3D | 278 | 448 | 171 | 3.8E-37 | ||
| Pfam | 297 | 439 | 143 | 1.9E-19 | ||
| PRINTS | 317 | 328 | 12 | 1.9E-9 | ||
| ProSitePatterns | 317 | 328 | 12 | - | ||
| PRINTS | 415 | 430 | 16 | 1.9E-9 | ||
| Phobius | 495 | 514 | 20 | - | – | |
| Phobius | 515 | 517 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Aspartic-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi2g1v0136300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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