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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0137300 |
| Transcript ID | LotjaGi2g1v0137300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT3G49142.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142; TrEMBL-Plants: tr|V7C596|V7C596_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0137300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:50186827..50189615) extracted from Lotus japonicus Gifu genome v1.2.
TAGAGCACGCCAAATTAACTACATGTTCGTTTGGTTCTCTGACCAATAACAGGCGAAAAATTCCCAGATTTTGCTTAACA ATGCTGTGCCATCAAACTTGACCAAAGTAACAGCTTCAAATTCATGAAACCTCCTCTGTCTCGAAACATTTCCAAATTGC AAGCATTGGTTTCTTCATTCCAAAAATCACTAGCATCCTTTCAGAGCCCAGTTATTGCTGTGGAACTTCTGGGCAAAGCA CTAGACCAATACCCAGATATTATAGCCTTGAAAAATGTCCACACCAAGCTTATTTATCTCAATTCTCATGAAAACCCATC TCTGGGAATCAAACTCATGAGAGCCTATGCTGCCTGTGGAGAACCAGGGACGGCACGCAAGGTGTTCGATGAAATTCCTG AGAGGAATGTTGTTTTCTACAATGTCATGATCAGAAGCTATGTGAATAATCGTTGGTATAATGACGCGTTGCTTGTTTTC AGAGAGATGGTTAATGGTGGGTTTAGACCGGACAATTATACCTACCCTTGTGTCCTGAAGGCGTGCTCTTGCTCTGACAA TTTGAGGTTTGGGTTGCAGCTTCATGGAGCTATGTTGAAGGTTAGGCTGGATTGGAATTTGTTTGTCGGGAACGGTCTCA TTTCTATGTACGGGAAATGTGGTTGCTTGCTGGAGGCAAGGTATGTTCTTGATGAGATGCCGAGGAGGGATGTTGTGTCG TGGAACTCAATGGTTGCAGGCTATGCGCAGAATATGCGGTTTGATGATGCATTGGAAGTTTGTCGGGAAATGGATGATTT GGGACAAAAACCTGATGCTGGTACAATGGCGAGTCTCATGCCAGCAGTAACTAACACTTCGTCGGACAATGTTTTGTATG TTAAGGATATTTTTATAAATTTGGAGAAGAAGAGTTTGGTCTCGTGGAATGTGATGATAACTGTCTATATGAAAAATTCC ATGCCGGGAAATGCTATAGATTTGTATTTGCAAATGGAGAAAAGTGAAGTCGAGCCAGATGCAATCACTTGTGCTAGTGT TCTTCCAGCATGTGGTGATCTTTCAGCTTTGTTGTTAGGAAGGAGGATTCACGAATATGTTGAGAGGAAGAAACTACGTC CGAATTTGCTGCTGGAAAATTCATTGATAGACATGTACGCTAGGTGCGGATGTCTAGAAGATGCACAAAAGGTCTTTGAC AAAATGAAGTTTCGTGATGTTGCATCGTGGACATCATTGATATCTGCCTATGGTATGACTGGGCAAGGCTGCAATGCTTT GGCACTTTTCTCAGAAATGCAAAATTCAGGTATAAGTCCAGATCATATCGCCTTTGTCGCAATTCTCTCAGCTTGTAGCC ATTCAGGATTATTGGAAGAAGGGAAAGTTTACTTTAAGCAGATGACTGATGATTACAGAATAACACCAAGAATTGAACAC TTTGCGTGCTTGGTAGATCTTTTAGGACGTGCTGGGCGAGTAGATGAGGCCTATGATGTCATCAAACAGATGCCATTAGA ACCTAATGAAAGAGTTTGGGGGACACTACTTAGTTCTTGCAGGGTGTACTCCAACATGGATATTGGCCTCTTAGCAGCTG ACAACCTACTTCAGTTGTCTCCTGAGCAATCAGGTTATTATGTGTTGTTATCTAATATTTACGCAAAGGCCGGTAGATGG AAAGAAGTAACAGAAGTTAGATCATTAATGAAGAGAAGAAGAATTCGGAAAACGCCCGGCATCAGCAATGTTGAGCTGAA CAGTCAGGTTCACACATTTCTCGCCGGTGACACGTCGCATCCGCAGTCAAAGGAGATCTATGAAGAGCTATATGTGCTGG TGGGAAAGATGAAGGAGTTGGGTTATGTTCCTGAAACTGATTCTGCACTTCATGATGTGGAGGAGGAGGATAAGGAAGGC CATCTAGCTGTTCACAGTGAAAAGCTAGCTATTGTGTTTGCTCTTTTGAATACCCATGAGTCTCCGATCAGAATTACCAA AAACCTTCGTGTTTGTGGAGATTGCCATATTGCTGCTAAGCTTATCTCCAAGATAGTTGGACGTGAAATTGTTATTAGGG ACACCAATCGATTCCACCATTTTAAGGATGGCTTATGCTCATGTGGTGATTATTGGTGAGGTTCTTGATGAAAATATAAC TGGAATCTGCTACTATAATTGAGGTTGTTTTCACTACAAGAAATTGTAATAATAGCTACAGAAAAAGGTAATCGCTAGCT AATTTTTGAGAGTTAGATATTGAAATTTTACCAAGAAAGTAACTATCAATTAGTAACGAATTAACCCTGATCATTGTTTA AAAATAAAATAAAATCACTAATCTCCGATTTTCTCATTCATTAGCATTTGGATTGAACCCAAATTGACAATCTGCAACCT AACCGCAGACCAGTGTTTGGAACTTCTTTTGCCAGTGATAGCCTCCTTTTTGATTGGGGGAAATGTTCATGAGGTCGATT ATCATAAATCATCTCCATTTACCAAAATGCTTTGGGATAACAATAAATTTGGACAGAACTGGAATTCCTCGGTTAAAATG TGCAGAAGACTGCTGGTTTCAGAGACAATTGAATGAAATGTGATGAATGATAGTTTAAGAAGAGAAATAAGGGTCTATTA AGATTGAGTGTTTTACTCAACTACTTATATAGGGCAGTTGAGTGCAGCAGCAGTCTATTCAGATTGATAACTTATGTATT TATGGTTTTTGAATGCAGAAATGCAGAATTGAATTACATCAGTCTTTCTGTGCTGTTCCTTTATTTATG
CDS sequence (LotjaGi2g1v0137300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACCTCCTCTGTCTCGAAACATTTCCAAATTGCAAGCATTGGTTTCTTCATTCCAAAAATCACTAGCATCCTTTCA GAGCCCAGTTATTGCTGTGGAACTTCTGGGCAAAGCACTAGACCAATACCCAGATATTATAGCCTTGAAAAATGTCCACA CCAAGCTTATTTATCTCAATTCTCATGAAAACCCATCTCTGGGAATCAAACTCATGAGAGCCTATGCTGCCTGTGGAGAA CCAGGGACGGCACGCAAGGTGTTCGATGAAATTCCTGAGAGGAATGTTGTTTTCTACAATGTCATGATCAGAAGCTATGT GAATAATCGTTGGTATAATGACGCGTTGCTTGTTTTCAGAGAGATGGTTAATGGTGGGTTTAGACCGGACAATTATACCT ACCCTTGTGTCCTGAAGGCGTGCTCTTGCTCTGACAATTTGAGGTTTGGGTTGCAGCTTCATGGAGCTATGTTGAAGGTT AGGCTGGATTGGAATTTGTTTGTCGGGAACGGTCTCATTTCTATGTACGGGAAATGTGGTTGCTTGCTGGAGGCAAGGTA TGTTCTTGATGAGATGCCGAGGAGGGATGTTGTGTCGTGGAACTCAATGGTTGCAGGCTATGCGCAGAATATGCGGTTTG ATGATGCATTGGAAGTTTGTCGGGAAATGGATGATTTGGGACAAAAACCTGATGCTGGTACAATGGCGAGTCTCATGCCA GCAGTAACTAACACTTCGTCGGACAATGTTTTGTATGTTAAGGATATTTTTATAAATTTGGAGAAGAAGAGTTTGGTCTC GTGGAATGTGATGATAACTGTCTATATGAAAAATTCCATGCCGGGAAATGCTATAGATTTGTATTTGCAAATGGAGAAAA GTGAAGTCGAGCCAGATGCAATCACTTGTGCTAGTGTTCTTCCAGCATGTGGTGATCTTTCAGCTTTGTTGTTAGGAAGG AGGATTCACGAATATGTTGAGAGGAAGAAACTACGTCCGAATTTGCTGCTGGAAAATTCATTGATAGACATGTACGCTAG GTGCGGATGTCTAGAAGATGCACAAAAGGTCTTTGACAAAATGAAGTTTCGTGATGTTGCATCGTGGACATCATTGATAT CTGCCTATGGTATGACTGGGCAAGGCTGCAATGCTTTGGCACTTTTCTCAGAAATGCAAAATTCAGGTATAAGTCCAGAT CATATCGCCTTTGTCGCAATTCTCTCAGCTTGTAGCCATTCAGGATTATTGGAAGAAGGGAAAGTTTACTTTAAGCAGAT GACTGATGATTACAGAATAACACCAAGAATTGAACACTTTGCGTGCTTGGTAGATCTTTTAGGACGTGCTGGGCGAGTAG ATGAGGCCTATGATGTCATCAAACAGATGCCATTAGAACCTAATGAAAGAGTTTGGGGGACACTACTTAGTTCTTGCAGG GTGTACTCCAACATGGATATTGGCCTCTTAGCAGCTGACAACCTACTTCAGTTGTCTCCTGAGCAATCAGGTTATTATGT GTTGTTATCTAATATTTACGCAAAGGCCGGTAGATGGAAAGAAGTAACAGAAGTTAGATCATTAATGAAGAGAAGAAGAA TTCGGAAAACGCCCGGCATCAGCAATGTTGAGCTGAACAGTCAGGTTCACACATTTCTCGCCGGTGACACGTCGCATCCG CAGTCAAAGGAGATCTATGAAGAGCTATATGTGCTGGTGGGAAAGATGAAGGAGTTGGGTTATGTTCCTGAAACTGATTC TGCACTTCATGATGTGGAGGAGGAGGATAAGGAAGGCCATCTAGCTGTTCACAGTGAAAAGCTAGCTATTGTGTTTGCTC TTTTGAATACCCATGAGTCTCCGATCAGAATTACCAAAAACCTTCGTGTTTGTGGAGATTGCCATATTGCTGCTAAGCTT ATCTCCAAGATAGTTGGACGTGAAATTGTTATTAGGGACACCAATCGATTCCACCATTTTAAGGATGGCTTATGCTCATG TGGTGATTATTGGTGA
Protein sequence (LotjaGi2g1v0137300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKPPLSRNISKLQALVSSFQKSLASFQSPVIAVELLGKALDQYPDIIALKNVHTKLIYLNSHENPSLGIKLMRAYAACGE PGTARKVFDEIPERNVVFYNVMIRSYVNNRWYNDALLVFREMVNGGFRPDNYTYPCVLKACSCSDNLRFGLQLHGAMLKV RLDWNLFVGNGLISMYGKCGCLLEARYVLDEMPRRDVVSWNSMVAGYAQNMRFDDALEVCREMDDLGQKPDAGTMASLMP AVTNTSSDNVLYVKDIFINLEKKSLVSWNVMITVYMKNSMPGNAIDLYLQMEKSEVEPDAITCASVLPACGDLSALLLGR RIHEYVERKKLRPNLLLENSLIDMYARCGCLEDAQKVFDKMKFRDVASWTSLISAYGMTGQGCNALALFSEMQNSGISPD HIAFVAILSACSHSGLLEEGKVYFKQMTDDYRITPRIEHFACLVDLLGRAGRVDEAYDVIKQMPLEPNERVWGTLLSSCR VYSNMDIGLLAADNLLQLSPEQSGYYVLLSNIYAKAGRWKEVTEVRSLMKRRRIRKTPGISNVELNSQVHTFLAGDTSHP QSKEIYEELYVLVGKMKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLNTHESPIRITKNLRVCGDCHIAAKL ISKIVGREIVIRDTNRFHHFKDGLCSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 19 | 8 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 671 | 647 | - | – | |
| PANTHER | 52 | 159 | 108 | 2.3E-111 | – | |
| Gene3D | 58 | 164 | 107 | 1.1E-20 | ||
| ProSiteProfiles | 64 | 94 | 31 | 6.654 | ||
| Pfam | 95 | 141 | 47 | 1.4E-11 | ||
| ProSiteProfiles | 95 | 129 | 35 | 11.794 | ||
| TIGRFAM | 98 | 130 | 33 | 3.8E-8 | ||
| ProSiteProfiles | 130 | 164 | 35 | 6.138 | ||
| PANTHER | 143 | 244 | 102 | 2.3E-111 | – | |
| ProSiteProfiles | 165 | 195 | 31 | 7.673 | ||
| Gene3D | 165 | 250 | 86 | 6.5E-20 | ||
| TIGRFAM | 170 | 198 | 29 | 4.2E-4 | ||
| ProSiteProfiles | 196 | 230 | 35 | 12.266 | ||
| Pfam | 196 | 239 | 44 | 3.7E-7 | ||
| TIGRFAM | 198 | 232 | 35 | 2.7E-7 | ||
| PANTHER | 254 | 311 | 58 | 2.3E-111 | – | |
| ProSiteProfiles | 264 | 298 | 35 | 10.337 | ||
| Pfam | 264 | 310 | 47 | 3.0E-9 | ||
| TIGRFAM | 266 | 300 | 35 | 4.1E-6 | ||
| Gene3D | 266 | 430 | 165 | 1.1E-39 | ||
| ProSiteProfiles | 299 | 333 | 35 | 6.61 | ||
| PANTHER | 315 | 530 | 216 | 2.3E-111 | – | |
| ProSiteProfiles | 334 | 364 | 31 | 8.824 | ||
| TIGRFAM | 339 | 366 | 28 | 0.0011 | ||
| Pfam | 339 | 364 | 26 | 9.2E-6 | ||
| Pfam | 365 | 412 | 48 | 4.6E-8 | ||
| ProSiteProfiles | 365 | 399 | 35 | 11.389 | ||
| TIGRFAM | 368 | 400 | 33 | 4.9E-5 | ||
| ProSiteProfiles | 400 | 430 | 31 | 7.443 | ||
| Gene3D | 431 | 613 | 183 | 5.1E-12 | ||
| ProSiteProfiles | 436 | 466 | 31 | 7.388 | ||
| TIGRFAM | 440 | 463 | 24 | 0.0015 | ||
| Pfam | 442 | 463 | 22 | 0.044 | ||
| ProSiteProfiles | 502 | 536 | 35 | 7.465 | ||
| Pfam | 508 | 534 | 27 | 0.19 | ||
| Pfam | 538 | 661 | 124 | 5.0E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0137300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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