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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0138300 |
| Transcript ID | LotjaGi2g1v0138300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FtsH; TAIR: AT5G52882.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q60QD1|FIGL1_CAEBR Fidgetin-like protein 1; TrEMBL-Plants: tr|A0A0R0FRX2|A0A0R0FRX2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0138300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:50571648..50573009) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCCACCATCACTTCAAAATGGTTTGGAGAAGACGAAAAGAATGTCCGCGCTCTGTTCTCGCTAGCAGCAAAGGTTGC TCCTACTATAATCTTTGTCGATGAGGTTGACAGCATGCTTGGTCAGAGGACTAGAGTTGGAGAGCATGAGGCCATGAGGA AGATTAAAAATGAATTCATGACACACTGGGATGGGCTATTAACTGCACCTGGTGAGCAAATTCTCGTTCTTGCTGCAACC AATAGGCCATTTGACCTCGATGAAGCAATTATTAGACGGTTCGAGCGCAGGTAGGAAACATCTTTATCATATTGTTTGGC ATGATCATTTGTTGATTCTGTTCAGCTACAGCATCTTTACCATTTTAACAAAGACACATGCATTATATTCATTATTTATG ATGAACAGCTGGGGGGCCATAAGAAAACAAGAAAAATTCATGATAAACAGTTCATAATACTGACATTTCATCAATTTCTT TTTGAAAAGAAGCATGAGATCTCAATTATTTTAATCTTTTAGTGATGCTGTTCAATTTTCATTTAGAGTTGTCCCCTCTT CTTTTTTATTTAGCTAGCATATGTCTCCCTCAGAAGACAGATCTTGTGTAGCTTTTGTTTCCCTACTTTCAGCAACTTTT TCTGTTTCCTTGTTGTTTAAATTATTCACCAATTGAGAGTCCCATTTGCATAACGGTAAACCAAACAGGCTCTGTGTCTA GGCTTGTTAATAGTGCGCAATAGCTCTATAGCGTAGCACCTTGGGGGTTCACCGCTATCTGTCGCTATTTGCCGCTATAG CGCTCGAAATAGCGTTTTTCGGGATTGCCGCTACGCTACGCTATCAGCCATTAACAACCTATCAAATATCTTTTGTGAAA TCGATAAAATCAAGTGTTCTTTTCAACTGTAAAATGACAATTCTCATCAATTATGAGCGCTAGCAGAATCATCTAAGAGC AATATCATTAGACAATGTTCTTTTCCCAAAAACATTCTTATTCTCTTGATTTGTTGATAGCATCTTACTAATTTTTAAAT GTTGAGCAGGATCATGGTTGGCCTTCCATCTGTTGAGAACAGGGAAATGATCCTGAAAACTCTCCTGGCTAAGGAAAAGC ATGAAAACTTAGACTTCAAAGAGCTGGCAACCATGACAGAAGGATACAGTGGAAGTGATCTTAAGGTAAACTTTTGCTGA GATAACTAGTTTTATCTTGTGGTGATGATATGATCTGATGCTATAAATTTATGTGCACAGAATTTGTGCATCACCGCCGC TTATCGACCTGTGAGGGAGCTAATACAGCAAGAGAGAAAGAAGGATATGGTAGTTGTTAAACTCCTACTGTGTTATGATT AA
CDS sequence (LotjaGi2g1v0138300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCACCATCACTTCAAAATGGTTTGGAGAAGACGAAAAGAATGTCCGCGCTCTGTTCTCGCTAGCAGCAAAGGTTGC TCCTACTATAATCTTTGTCGATGAGGTTGACAGCATGCTTGGTCAGAGGACTAGAGTTGGAGAGCATGAGGCCATGAGGA AGATTAAAAATGAATTCATGACACACTGGGATGGGCTATTAACTGCACCTGGTGAGCAAATTCTCGTTCTTGCTGCAACC AATAGGCCATTTGACCTCGATGAAGCAATTATTAGACGGTTCGAGCGCAGGATCATGGTTGGCCTTCCATCTGTTGAGAA CAGGGAAATGATCCTGAAAACTCTCCTGGCTAAGGAAAAGCATGAAAACTTAGACTTCAAAGAGCTGGCAACCATGACAG AAGGATACAGTGGAAGTGATCTTAAGAATTTGTGCATCACCGCCGCTTATCGACCTGTGAGGGAGCTAATACAGCAAGAG AGAAAGAAGGATATGGTAGTTGTTAAACTCCTACTGTGTTATGATTAA
Protein sequence (LotjaGi2g1v0138300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTITSKWFGEDEKNVRALFSLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTAPGEQILVLAAT NRPFDLDEAIIRRFERRIMVGLPSVENREMILKTLLAKEKHENLDFKELATMTEGYSGSDLKNLCITAAYRPVRELIQQE RKKDMVVVKLLLCYD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 164 | 164 | 5.5E-109 | – | |
| CDD | 1 | 102 | 102 | 5.56917E-8 | – | |
| PANTHER | 1 | 164 | 164 | 5.5E-109 | – | |
| SUPERFAMILY | 1 | 158 | 158 | 6.73E-32 | ||
| Gene3D | 2 | 102 | 101 | 6.5E-58 | – | |
| Pfam | 2 | 101 | 100 | 1.3E-21 | ||
| ProSitePatterns | 74 | 93 | 20 | - | ||
| Gene3D | 103 | 163 | 61 | 6.5E-58 | – | |
| Pfam | 123 | 165 | 43 | 3.7E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi2g1v0138300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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