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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0142800 |
| Transcript ID | LotjaGi2g1v0142800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G62670.1 rna processing factor 2; Swiss-Prot: sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial; TrEMBL-Plants: tr|A0A072TFX1|A0A072TFX1_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi2g1v0142800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:51844474..51850575) extracted from Lotus japonicus Gifu genome v1.2.
ATTATCTTCAACCTACGTTTGTACCAAAAAAACTTCAACCTACGCCACTCCACCAATGCCACGGTGAATCTCAGTTCAAG TCGCTAAGTTTGCTTGTGAGTTGTGAGGTTCGGAATCGGCGTAGTGATTAATCTTCACTATCCAGTTGTGCACAATGTCA GTTTTAAGGTATAGGTGGTTTCATCGTAATCCCACTTTTCTTCTAGCAATGCCCTTTTCATCCCTTCACTCTCACTCTCA CTCTTTGCCTAATGATGCTGTGTGTTTATTCAATCGCTTGTTACAAATGCGTCATACCCCTTCCATCATTGAATTTAACA AGATTCTTACTCCTCTCGTGAAGACGAAGCATTACTCCATCGCCATATCCCTTTCTCACCAAATGGAATTTAGGGGAATC ATGCCTGACATCGTTACTCTCAACATCTTAATCAACTGTTACTGCCACCTAGGTCAAATGTCTGTTGCCTTTTCTGTTTT GGCCAAGATTCTCAAGAGGGGTTATAAGCCAAATACAATCACCTTCACTACCCTCATTAAAGGTCTCTGTCTTAATGACC AGGTTAAGAGAGCACTGCAATTTCATGACGAGCTGCTAGCACAAGGAATTCAATTGAACCAAGTTAGCTATGGGATCTTA ATCAATGGGCTGTGTAAAGTGGGACAAACAAGAGCTGCCCTGCGATTGCTGAGACAGATTGAAGGGAAATTAGTTCAGCC TAATGTGGTCATGTACAACACAATCATTGATAGCCTCTGCAAAGATAAACTTGTAAGTGAAGCTTGCGATTTATATTCGG AAATGGTACTCAAGAGAATTTCTCCTACTGTTGTCACTTTCAATGCTCTAATTTATGGCTTTTGCATTGTGGGTCAATTG AAAGAAGCAGTTGGTTTGCTAAATGAAATGGTGTTGAAAAACATCAACCCAATTGTTAATACTTTTACTATTCTGGTTGA TGGGTTATGTAAGGAAGGAAAGGTGAAAGAAGCTAAAAATGTGTTAGCTGTGATGATGAAAGAAGGTGTAAAGCCTGATA TTTTCACTTACAATTCTATCATGGATGGGTATTGCCTAGTTAAAAAAGTGAACCAGGCTAAAGATGAATTCAACTCTATG ACTCAGAGGGGAGTCGCTCCTGATGTTTGCAGCTACAATATCATGATTAATGGATGCTGTAAGATTAGAATGGTGCATGA CGCTCTGGATCTCTTTGAAGAAATGCATTCCAAAAATCTGATTCCTGATACAGTAACTTACAGCTGCCTTATTGATGGTC TGTGCAAAGTAGGGAGAATATCTTGTGCTTGGGAGCTTGTTGGTAAAATGCACGACAGAGGTCAACAAGCCGATGTAATC ACTTACAATTCTTTATTAGATGCTCTATGCAAGAATCATCATGTTGACAAGGCAATTGCATTACTTGAGAGAGTTAAAGA CAAGGGCATTCAACCAGATATGTACACATACAATATAATTATTGATGGACTATGCAAAAGTGGAAGACTAAAGGATGCAC AAGAGGTTTTTCAGGATCTTTTGATTAAAGGCTATCGGCTAAATGTTGTGACATATAATATAATGATCAATGGGCTTTGT ATAGAGGGTTTGTCCGATGAAGCACTGGCCTTGCTATCAAAAATGGAAGACAATGGCTGTGTTTCTGATGCTATAACTTA TGAAACAATTATTCGGGTTCTCTTTAGAAAAAATGAGAATGATAAAGCACAGAAACTTCTTCATGAGATGATTGCTAGAG GTCTGCTTAAGAGTGAAGTCAAGTGAGGTGCTTTCCAGTTAGACTTTGTTACTTTGAATATTCATGATGGACATCCAGTC TTTTTCAATTATATTTTGAATTTGAATTTTTATTTTTTATAATTTGTTAGATGTATGATTCGTTGATTAGTTGTTGTGGT TATTTCTGTTTAGTCTTCAGTTATACTTTCTGTTATGCTTAATTGGCATATCATATGCTGTTAAGATAGTAGGCTTTTAG CTTTCTGTTATTCAGTTATGCTTTGCTCAATAGTTAGTTATTCTAGTAGCTTCCTGCTGAAGCTAATCAATCTATAAATG TTACCAATGATAGTAGGCTTTTGGCCTTTGTTGCTGTTGCAAACCCACACTCTAGGCCCAGATTTGGCAAAGTCTATGAG AGGAGGCCCAAGCAAGGGACAGCTGTACCTGAAGATCCACCTTCTAGAAGCTTGGATCCCAAGATAACCGACTAATGAGG TGGCAACACACACATGGGTGAGGGGGGGACCATAGGGTATCAACCTAGGGAATATATGTTGGTTTGGAGAGAGAGGAGGT AGGCAGAAATTAGTCTGGACTGGGAGAGATTGAGCACTCTCGAATTGCTCAAGTTTATCTTGTTATTTTCTTCCTTGTAT TTCCCTAAACACTGCTTCTGGGTTCATACCAGAGGATTCAGTGCCTTAATAGCATTCAATCTTCTTCTTTCCTATTACAT TTTTCTGGTACCTAACAGTTGCCAATACAGCTGATGCTCCTTCAACTAAACAGAGCTGATAAGCTGACTCAGGGGCTAGT AATCATGTTACCAATGATCCTCAGCAGCTCATGGAGTCGATTACTATGGCTGGTCAGGAGCAAGTTTATGTGGGCAGTGG ACAAGGTCTGCCAATTCTTTCTAGGGGCTTTACTTCATTTTCTTCTCTTCTTTCTAATACTAAAATATCCCTCAATGATT TTCTACGTGTCTTTACTATTACAAAAAATCTTGTTAGTGTTCAGCAATTTGTATCATTGGTTATCGCAGAATGCACCTCC TCAGGAAAATCTATTACAGAATAATGGATCTCAATCTGGACCGTCATCTTCTCAATATCAACACCAGTATCTTGATTTTT CTGGTTTTTGTGGTAATTCCTTTCGTGGACGTTTTGGCCGAGAATGTCAAGTGTGCTATAAGAATGGACATGCTTTTTCA CTGTTATAATAGCTTTAATCATAATTTTATTTCACAGCAGCCATCTTACTATCACTCTGCTCAACAATCTGTTCCTCAGA GTAATTATGGTCTGCCTTCTTAGTCTCTGGAACCTCACTATGTCTTAGTAGTACCTTCACAACAGCAGATACAACTTGTC CAACATCAGTGCTTTCATGAGTGTATGGCAGCAACCTTCTGGATTTATTTTTATGCCAGCAGGTCCTCAGAATTTTTCAC GACAGCATTTTCAGCTTCCATAGTCTTCTCCTGCTCCTATGGCCTTTATTTCCAATATAGCTGCTGCTCCTTCAACTACA CAGAGCTGGTAAGCTGACTCAGGGGCTAGTCATCATGTTACCAATGATACTCACACCTCATGGAGTCTATTACTATGGCT GGTCAGGAGCAAGTTTATGTGGGCAGTGTACAAGGTCTGCCAATTCTTTATTGAGGCTTTACTTCATTTTCTTCTTCTCT TCTTTCTTATACTAAATTGTCCCTCAATGATTTTCTTCATGTCCCTACTATTACTAAAAATCTTGCTAGAGATAATTTCA TCTATATTGAGTTTTATCCATCTAAATGTTTTTTGAAATCTCAGGTCAACAACCAAATTTTGTTTGAAGGAGCAGCCAAC TCAATGGGGCTTTATGAGTTTCCTAGTTTACTTTGTAACTCCATCTTCTTACCAAATTCTAATGTTTCTAATTCATTAAA CTTTGCATCTCCTTTGTGGAAGAACTGTGACTTGTTCAGAAGCATTTTGACTCTGTCTTTGCTGGTGAAGCATGTTGTGT GTAACCTCTAGTTCTCATTTTCCTTAAAACTTCTGTTCATAATGACATTGACTATATTTTCTAGTAAAGTGTGTTTCTTG TATTTGTTCTCATTTTCATTGGACTTCTGTTCTGAAGCACATGGACTCTATCTTAACTAGTAAAGAACATTTCATGTTAC TAACCTCTTTCTCATTTTCATTAGACCTGTGCTGCATTTGGGTAAACACTCTGACCCTAAATCAGTTGAAGCTGAAGCTT TTAATAAACTGGGTCAGAACACCAATGGTAGTTCTATGATTCTATCAGTCTTTCCCACAGTCCTGGTATTGATTCATTCA AGAACATATTTTTTCGTTTTTTCGTTTTTTCTTTTACTTTTTCACTTTGATATGGCTTTGGCTTTGTTAATTATTGAGAA GCATTGTATTTCATTGTGTCATACTAAATTTTGCATTTATTTATAATGTGTCTTTTTCCAATTCAGATGAAGGAAGTTCC AAAATGGATAAAGGCATGGGACAGAAGAAATAGACATAGCATAGAACGTTGTCTCTTACAAGGGAAATAGACTGTTAAAC AAGGCGGTTGCTGTTGCAGGGCTTCTAATTTAGTTTTCATGAGGTTAGCACTAGTATGTTATCCTTTTCATATCATGATC CGATGTAAACCTTAGATACTATCACGGCATATAACCATCTCTATAAGATTCAAAGTTGATGCAAAGAACTAGTATATTTT AAGGGCTCACTTAAATACAAAAGAAAATTTAGGAGCTAAATTACAAGCAACAAATATTAATATCAGGACCAAGTTGTTTA CTTTACCATTTCTTTCATTGTAATTTGAGCTTAAATTTGGGTATAATTATCAATATATCTCCTCTTGTTGCATTTCTATC AAACACAAGTATGTTTCAGAGCTAGAAAACTAACAAACCAAATACTATTTCCGGTAGAGTACAAAAAATCATAATTCGCA CAAATATGCTACATTTTTATTTAGTAAACTATGGCATGATAATGTCTTCCCCAAAAGAACCCTATATGTGGAAAGTGGAA AACATGAAACTATAAGAATAGTATGGGAAAAATATATACATTAAGATTTCATATTTTGTTTCTCCCATGATTCCACTTGT TGAATTGTACCTTCCTTTCTCCTTAATTGTGCATTGAAGGATGGAGGATCATAAGGGGGAGGCATGGTGCATGGCATGGT GTTTTTAGGACCCTTGACCAATGATTCCATCATAAATTTCTTTTCAAATCTTTCTGCATTACAAACCATTGACTCGACAC ATAGCTCAATAGCTTGAGCACTAATGGATGGTTTATATCTAAAGAGTTTAGCATAAGAACTTAGGAGGTGAAACATGTAG TCATACACATAATCCATCTTCAACTCATCTTGAATGAAATCACTTGCCGCTTTTCCAATTTTCTGTGCCTGATGAACACC AAAAACAGTCAATAAACATGATGAAGTAAAAGTTTAGGAACATGCTAAGCTTCTTCACCAAGTACAAAATACTCGAACTC GAGACCTTGTTCAATGAAAATCAACCATGTACCACTTGAACTAACCGCTTGCTAGTAAATCTTTTTGGTAAGAATTATAT TATTGTCGCGGTGACTAGGCAAAACTTAAAGATTACCTTTTCCTTGTGACTATTGCCCCAATCCACTGCAAACTTAATGG ACTTGCATTTATCATCTTCCTTGATGGGCCAGTAGTGGTGCACTGGTATTAACCCTCTTGTGAAAAAGTCATAGTAATGG GGTTTTACAATTAAAGTGACAGAATCACATGCCAGAATGTACTTTTCACTGACAGACCAAGCAGAACCTTCGATGTAAAC CTTATACCTACACACATCATGATTGAATTAAAACAAGAATTTGTTAACTGCACACTACATATCAAATCACTATAAATATA TTACTACACAGAATAAAAGTATATAATGCAAGCAAGAAATCAAACTTATGCACTTTTTCATGTTCCATAGAGAGAAAGCA AGGTCTGAATACTATACCTGTGATTGCATTGGCTTGCCAAGTCTGATTTCTTGTACCCTTCTTGTGATTCACGAATCCAA TCCTGGAAGAAAAATTTCGGTTGTTAACTTAAGAGGCTTGCTGTAAGTTTCATTGTTGCATAAATATCTTGCGTTAAGGT CACACATTAACTAAAGATACGGCTAAATAATAAATTCTTATAAAGGATTGAATAACTCTCACTCCTAACTTAGTTTTCTA GTAGAGTTAGATCTAGTCTGAATTGTAAGAATGTTCTAGTTGTTCAATCATATGACATGAGAGGGTGTGTCAAAGTTTCA ATGACTAAAGATATGGCTAAAT
CDS sequence (LotjaGi2g1v0142800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGTTTTAAGGTATAGGTGGTTTCATCGTAATCCCACTTTTCTTCTAGCAATGCCCTTTTCATCCCTTCACTCTCA CTCTCACTCTTTGCCTAATGATGCTGTGTGTTTATTCAATCGCTTGTTACAAATGCGTCATACCCCTTCCATCATTGAAT TTAACAAGATTCTTACTCCTCTCGTGAAGACGAAGCATTACTCCATCGCCATATCCCTTTCTCACCAAATGGAATTTAGG GGAATCATGCCTGACATCGTTACTCTCAACATCTTAATCAACTGTTACTGCCACCTAGGTCAAATGTCTGTTGCCTTTTC TGTTTTGGCCAAGATTCTCAAGAGGGGTTATAAGCCAAATACAATCACCTTCACTACCCTCATTAAAGGTCTCTGTCTTA ATGACCAGGTTAAGAGAGCACTGCAATTTCATGACGAGCTGCTAGCACAAGGAATTCAATTGAACCAAGTTAGCTATGGG ATCTTAATCAATGGGCTGTGTAAAGTGGGACAAACAAGAGCTGCCCTGCGATTGCTGAGACAGATTGAAGGGAAATTAGT TCAGCCTAATGTGGTCATGTACAACACAATCATTGATAGCCTCTGCAAAGATAAACTTGTAAGTGAAGCTTGCGATTTAT ATTCGGAAATGGTACTCAAGAGAATTTCTCCTACTGTTGTCACTTTCAATGCTCTAATTTATGGCTTTTGCATTGTGGGT CAATTGAAAGAAGCAGTTGGTTTGCTAAATGAAATGGTGTTGAAAAACATCAACCCAATTGTTAATACTTTTACTATTCT GGTTGATGGGTTATGTAAGGAAGGAAAGGTGAAAGAAGCTAAAAATGTGTTAGCTGTGATGATGAAAGAAGGTGTAAAGC CTGATATTTTCACTTACAATTCTATCATGGATGGGTATTGCCTAGTTAAAAAAGTGAACCAGGCTAAAGATGAATTCAAC TCTATGACTCAGAGGGGAGTCGCTCCTGATGTTTGCAGCTACAATATCATGATTAATGGATGCTGTAAGATTAGAATGGT GCATGACGCTCTGGATCTCTTTGAAGAAATGCATTCCAAAAATCTGATTCCTGATACAGTAACTTACAGCTGCCTTATTG ATGGTCTGTGCAAAGTAGGGAGAATATCTTGTGCTTGGGAGCTTGTTGGTAAAATGCACGACAGAGGTCAACAAGCCGAT GTAATCACTTACAATTCTTTATTAGATGCTCTATGCAAGAATCATCATGTTGACAAGGCAATTGCATTACTTGAGAGAGT TAAAGACAAGGGCATTCAACCAGATATGTACACATACAATATAATTATTGATGGACTATGCAAAAGTGGAAGACTAAAGG ATGCACAAGAGGTTTTTCAGGATCTTTTGATTAAAGGCTATCGGCTAAATGTTGTGACATATAATATAATGATCAATGGG CTTTGTATAGAGGGTTTGTCCGATGAAGCACTGGCCTTGCTATCAAAAATGGAAGACAATGGCTGTGTTTCTGATGCTAT AACTTATGAAACAATTATTCGGGTTCTCTTTAGAAAAAATGAGAATGATAAAGCACAGAAACTTCTTCATGAGATGATTG CTAGAGGTCTGCTTAAGAGTGAAGTCAAGTGA
Protein sequence (LotjaGi2g1v0142800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVLRYRWFHRNPTFLLAMPFSSLHSHSHSLPNDAVCLFNRLLQMRHTPSIIEFNKILTPLVKTKHYSIAISLSHQMEFR GIMPDIVTLNILINCYCHLGQMSVAFSVLAKILKRGYKPNTITFTTLIKGLCLNDQVKRALQFHDELLAQGIQLNQVSYG ILINGLCKVGQTRAALRLLRQIEGKLVQPNVVMYNTIIDSLCKDKLVSEACDLYSEMVLKRISPTVVTFNALIYGFCIVG QLKEAVGLLNEMVLKNINPIVNTFTILVDGLCKEGKVKEAKNVLAVMMKEGVKPDIFTYNSIMDGYCLVKKVNQAKDEFN SMTQRGVAPDVCSYNIMINGCCKIRMVHDALDLFEEMHSKNLIPDTVTYSCLIDGLCKVGRISCAWELVGKMHDRGQQAD VITYNSLLDALCKNHHVDKAIALLERVKDKGIQPDMYTYNIIIDGLCKSGRLKDAQEVFQDLLIKGYRLNVVTYNIMING LCIEGLSDEALALLSKMEDNGCVSDAITYETIIRVLFRKNENDKAQKLLHEMIARGLLKSEVK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| Phobius | 14 | 24 | 11 | - | – | |
| Phobius | 25 | 28 | 4 | - | – | |
| Gene3D | 27 | 183 | 157 | 5.1E-36 | ||
| Phobius | 29 | 543 | 515 | - | – | |
| PANTHER | 31 | 288 | 258 | 2.1E-173 | – | |
| ProSiteProfiles | 50 | 84 | 35 | 7.41 | ||
| Pfam | 84 | 132 | 49 | 1.9E-15 | ||
| ProSiteProfiles | 85 | 119 | 35 | 11.619 | ||
| TIGRFAM | 87 | 121 | 35 | 1.4E-7 | ||
| ProSiteProfiles | 120 | 154 | 35 | 10.304 | ||
| TIGRFAM | 122 | 155 | 34 | 2.0E-5 | ||
| Pfam | 151 | 182 | 32 | 1.1E-7 | ||
| ProSiteProfiles | 155 | 189 | 35 | 10.479 | ||
| TIGRFAM | 157 | 183 | 27 | 5.9E-5 | ||
| Gene3D | 184 | 253 | 70 | 1.2E-21 | ||
| Pfam | 189 | 237 | 49 | 1.1E-16 | ||
| ProSiteProfiles | 190 | 224 | 35 | 11.619 | ||
| TIGRFAM | 192 | 225 | 34 | 7.8E-9 | ||
| ProSiteProfiles | 225 | 259 | 35 | 11.29 | ||
| TIGRFAM | 227 | 259 | 33 | 4.1E-6 | ||
| Gene3D | 254 | 320 | 67 | 5.3E-20 | ||
| ProSiteProfiles | 260 | 294 | 35 | 11.488 | ||
| Pfam | 261 | 307 | 47 | 9.8E-14 | ||
| TIGRFAM | 263 | 296 | 34 | 9.4E-9 | ||
| PANTHER | 283 | 395 | 113 | 2.1E-173 | – | |
| ProSiteProfiles | 295 | 329 | 35 | 11.762 | ||
| TIGRFAM | 297 | 331 | 35 | 3.8E-6 | ||
| Gene3D | 321 | 394 | 74 | 3.0E-25 | ||
| PANTHER | 326 | 503 | 178 | 2.1E-173 | – | |
| Pfam | 329 | 378 | 50 | 1.2E-19 | ||
| ProSiteProfiles | 330 | 364 | 35 | 13.187 | ||
| TIGRFAM | 333 | 366 | 34 | 9.7E-12 | ||
| ProSiteProfiles | 365 | 399 | 35 | 11.433 | ||
| TIGRFAM | 367 | 398 | 32 | 6.3E-8 | ||
| Gene3D | 395 | 462 | 68 | 1.3E-24 | ||
| PANTHER | 399 | 536 | 138 | 2.1E-173 | – | |
| Pfam | 400 | 448 | 49 | 3.4E-18 | ||
| ProSiteProfiles | 400 | 434 | 35 | 13.307 | ||
| TIGRFAM | 402 | 435 | 34 | 1.2E-8 | ||
| ProSiteProfiles | 435 | 469 | 35 | 12.573 | ||
| TIGRFAM | 437 | 470 | 34 | 7.5E-7 | ||
| Gene3D | 463 | 542 | 80 | 8.2E-20 | ||
| ProSiteProfiles | 470 | 504 | 35 | 12.485 | ||
| Pfam | 470 | 515 | 46 | 1.1E-13 | ||
| TIGRFAM | 472 | 505 | 34 | 2.1E-9 | ||
| ProSiteProfiles | 505 | 539 | 35 | 9.865 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0142800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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