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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0143100 |
| Transcript ID | LotjaGi2g1v0143100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal protein L6; TAIR: AT1G05190.1 Ribosomal protein L6 family; Swiss-Prot: sp|O23049|RK6_ARATH 50S ribosomal protein L6, chloroplastic; TrEMBL-Plants: tr|I1MPT8|I1MPT8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0143100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:51942826..51945497) extracted from Lotus japonicus Gifu genome v1.2.
AACTAAGAAAAATGGTAATTGCTGATAGAAAGACTAGTAGATAAGATGCAACAGGTAACAAAAGAGTTATCTTTTTATTT TGCTTGGATAAGGCTTTCTCCTCCTTGGGTGCGGCATTTCGCACACTCACTGCGTAACAATGGCTTCCACAGTCACCTCC TCATTCCAAATCAGGTCAGGAACACCTTTCTCTTTTCTCTTCTTTGGTTCAGTTATGCATTTCCTTTCCTTCATTCCCTG TATTTTTTGAGGCATCTGAATTTCATGTGTTACATTGCACTTTTCTCTTGTTCAATAATGTTAACATGGTTCATCAAGAA GCAAAAACACCCATTTCGGATTTCAGCTCCTTTATGTCTCAATTGGGTCAAAAGGGTTTTATGCTGACTCAAGCAATTTG TGGGTCTCATTCTGGTTGTCACTTGTAGATAATGTATAATCTTGTCAATATTTGCTTGGATTTCGATGAAATAGATGTTG CACTGAGGATGTTTGATGAAATGCTTCAATGAGCGTCCTTGCTTAGTAGTCCAACAGGGAATTCTGGACGAAATTATTCA TAAGGAATATGTTCATGCTTTAACTAATAATAGTTTTGCTTTGGGAGATTATTGTCTGGCTCACACATTTCGTTGGTTTC TTTTATGCAAAGCGTTGATGTGAGGCATGTTTTATGTTATAGTAGGAGTCTAAATTGTTTTGTCAATTTTAATATTGACC ATAAGGCTATGGAGGGGAAAATAACTTCCATACGGAATGGAAAGTTAGTTCTGAGTAAAAGCCGAGGCTGCCGAGCATTA AGTTTACCATGCATTGTATCTATTTCGGATGCTCTTGATTTTGTTTTTCTATTCTTGTTTTCATGTATACATATGATTGA TGGACTTTCTTAGTTGATTAAAATCTCATTAATTCAAAGTAAACTCTTATCAAATTTGAGAAATCTAACTAATCATTGAT GTTCAGCAATTTGAAGTCTGGTTTCTTGGGTGAGAGAAATAAATTCAGAGGTTCAAGTGTTCCTTCTGCTGCTCATGTTG GTTTCTCTAGAAAGACTACAGAATGTAAGGAATCACGGATCGGGAAGCAACCGGTTGATGTTCCATCTAATGTTACTATC AAATTGGAAGGGCAGGATATAGCAGTGAAAGGTCCTCTGGGGGAACTTGCATTATCTTATCCTCGAGAAGTCTTGGTTGA GAGGGAAGAGTCAGGAGCTCTAAGAGTTAAGAAGGCCGTCGAAACTAGAAGGGCGAATCAAATGCATGGGCTTTTTAGGT ACTTCATTTTACTGACCCTTTTTTATCAATTGTTTTTGTCTCAATATCATGTAATACCTTTGAATCTATATGCCTTAGTT AAAATTATTTTGTTAACACACTTAAAAGACATTGGGAATAACATTTATTCCTTATTGGAAACAACGGATGTTGCCAATGC TACTGGTATAATGATAGATGTAAACTTATAAACTTTGATTCATCTATCGGTGTTGCTTTCTCATAAGTCATGGCAATAAA TTATTTGAGCTAGATATTGGTATTGATAGTTTGTATTTTCGTAGCATTCACTTAAGACAGGAACACAGTGGTGCAAAATG GATGAGCTTATAAATTTGGTTATTCTTAATCACGATAATTCAGGTTTTTTGTTATAATTGTTATTTAGGTATTTTGAGAT GTTGATTCTGTTGTCTTTTCATTGGTCATTTGTTTTTGAGAAACTATTATATGATTAGAATTTATATTTTATTAGGCCTG GCATAATGTTGTTGTTGTTGTTGTTGTTTCTCTTTTTGTTATTGTTATACACTTATACTTCCATTACAGAATAAAAGTTT GCTTGTATGCGCAGAATCATGGGTTTCACCAATCACCATTCAAAGCTTAAGCTGTGCATCACAGCTTGCATTTATACAAA TATCTCTTCTTAATTCTAATTATATTTCACCTGTCTATATTAGATCCATGTTTGACTCTTATGTGATTTGCAAAAATGTT ATTAGGACACTTACAGACAACCTGGTTGTTGGAGTATCTAAAGGTTTTGAAAAGAAGCTTCAGCTTGTTGGCGTTGGGTA TCGTGCTACGGTAGAAGGAAATGATGTAGTCCTGAATCTTGGATTTTCTCATCCTGTTAGGATGACAATCCCTGATGGCC TCAAAGTGAAGGTAGAAGAAAACACGAGAATCACAGTTAGTGGATATGACAAGTCTGAGATTGGCCAGTTTGCTGCTTCA ATAAGGAGATGGAGACCCCCAGAACCATACAAAGGTAAGGGTGTCAAATATGCTGATGAAATAGTGAGGAGAAAGGAAGG AAAAGCAGGGAAGAAGAAGTAATGGCCGTTCCAATTTTCCATTTTTATTTATCTCCTGTTGTTTTTCCTCGTTTCTTGGA AATGGAAATGTTGTGCAAACCGGATAATGGAAATTCATGTGTATTAAGATAATCTATAATATTAATTGCTTATTCGTCTC TCCCTCTTTCTCTCTCTCTTTTAAGTCAGCTATAATAAAAACTGTTATTATACTATGGCCATGATCAGAGACAGACCCAG GTTTAGCTGAAAGGGGCGATCGCCCCCCACAATTTAAAAAAATGACAATACATGGTACTGAGAACATTGTGTTCGCCCCC CCTCCCAAGCAGCCAGCTAGCTAATTAAAAAG
CDS sequence (LotjaGi2g1v0143100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCACAGTCACCTCCTCATTCCAAATCAGCAATTTGAAGTCTGGTTTCTTGGGTGAGAGAAATAAATTCAGAGG TTCAAGTGTTCCTTCTGCTGCTCATGTTGGTTTCTCTAGAAAGACTACAGAATGTAAGGAATCACGGATCGGGAAGCAAC CGGTTGATGTTCCATCTAATGTTACTATCAAATTGGAAGGGCAGGATATAGCAGTGAAAGGTCCTCTGGGGGAACTTGCA TTATCTTATCCTCGAGAAGTCTTGGTTGAGAGGGAAGAGTCAGGAGCTCTAAGAGTTAAGAAGGCCGTCGAAACTAGAAG GGCGAATCAAATGCATGGGCTTTTTAGGACACTTACAGACAACCTGGTTGTTGGAGTATCTAAAGGTTTTGAAAAGAAGC TTCAGCTTGTTGGCGTTGGGTATCGTGCTACGGTAGAAGGAAATGATGTAGTCCTGAATCTTGGATTTTCTCATCCTGTT AGGATGACAATCCCTGATGGCCTCAAAGTGAAGGTAGAAGAAAACACGAGAATCACAGTTAGTGGATATGACAAGTCTGA GATTGGCCAGTTTGCTGCTTCAATAAGGAGATGGAGACCCCCAGAACCATACAAAGGTAAGGGTGTCAAATATGCTGATG AAATAGTGAGGAGAAAGGAAGGAAAAGCAGGGAAGAAGAAGTAA
Protein sequence (LotjaGi2g1v0143100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTVTSSFQISNLKSGFLGERNKFRGSSVPSAAHVGFSRKTTECKESRIGKQPVDVPSNVTIKLEGQDIAVKGPLGELA LSYPREVLVEREESGALRVKKAVETRRANQMHGLFRTLTDNLVVGVSKGFEKKLQLVGVGYRATVEGNDVVLNLGFSHPV RMTIPDGLKVKVEENTRITVSGYDKSEIGQFAASIRRWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 38 | 226 | 189 | 9.0E-92 | ||
| PANTHER | 38 | 226 | 189 | 9.0E-92 | ||
| Gene3D | 46 | 129 | 84 | 1.4E-28 | ||
| Hamap | 47 | 223 | 177 | 36.813 | ||
| TIGRFAM | 48 | 223 | 176 | 1.1E-69 | ||
| SUPERFAMILY | 48 | 129 | 82 | 2.09E-20 | ||
| Pfam | 57 | 129 | 73 | 2.0E-12 | ||
| PRINTS | 118 | 143 | 26 | 7.9E-34 | ||
| Gene3D | 130 | 227 | 98 | 1.9E-42 | ||
| SUPERFAMILY | 130 | 223 | 94 | 7.07E-37 | ||
| Pfam | 137 | 211 | 75 | 7.5E-21 | ||
| PRINTS | 146 | 162 | 17 | 7.9E-34 | ||
| PRINTS | 188 | 209 | 22 | 7.9E-34 | ||
| ProSitePatterns | 201 | 209 | 9 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Molecular function | RRNA binding | Interacting selectively and non-covalently with ribosomal RNA. |
Expression pattern of LotjaGi2g1v0143100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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