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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0148600 |
| Transcript ID | LotjaGi2g1v0148600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G12700.1 RNA processing FACTOR; Swiss-Prot: sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial; TrEMBL-Plants: tr|A0A072TFX1|A0A072TFX1_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi2g1v0148600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:53433320..53435690) extracted from Lotus japonicus Gifu genome v1.2.
TTGAGAGAATGGAGTCCCTTACTGTACAGTGATACTTCAACATTTAACATTTAGTGAATACTTTGAAGAGTGGGAGTGGT GACATGGCCCCTGTTAGCTACATCAACTCAACATATAACGTTGTGATACTATACAATGGGACTAAAGCTAAAGTTATTTC TAAAAGCAGTGACCAAAATCACAATAAACAAATGTCAGGGACCAAAACAAATTATTATAAGCCTTAACATTTAACAAAAT CTTCCTTCCTTCTTTCTTTCCAGTGGAACAATGTTCATTCTGAGGTTGATGAGGTTTCCCTTTCTTCCTAATCCCTCTTT TCTTCGTTCCTTTCACTCTCACTCTCACTCTCACTCTCACTCTCACTCTCGCTTTCATTCTTCCTTTCACAATCCTGGTG ATGCCATCTCACACTTCAATCGCTTACTCCGAATGTGTCCTACTACCCCTTCCATCGTTGAATTTAACAAGATTTTAACT TCCCTTGTTAAGACCAAGAAGCATTACTCCACCGCTATCTCGCTTTCTCACCAGATGGAGTTCACTGGAATCAAGCCAAG CCTTGTTACTATGAACATCTTGATCAATTGCTACTGCCACCTAGGTCAAATCAATTCTGCTTTTTCTGTACTCGCCAGAA TTCTCAAGAGTGGTTATCAGCCTGATACCATCACCTTCACTACTCTTATCAAAGGTCTCTGTCTTAGTGGCAAGGTTCAG CGAGCCCTCCAATTTCATGACGATGTGATAGCACAGGGATTTCGGTTGGATCAAGTCAGTTACGGAACCTTGATCAATGG GCTATGTAAAATAGGGGAAACCAGAGCTGCTTTGGAGTTGCTTAGGCGGATTCAAGGGCGAGGGATTAAACCTGATGTGG TAATGTACAGCACAATCATCGATAGCCTGTGTAAAGATAAACTTGTAAGTCATGCTTGCAATTTATATTCTGAAATGCTT GCCAAGGGAATATCTCCTAATGTAGTCACGTACAGTGCTTTAATATATGGCTTTTGCATTGTTGGTCAATTGAAACAAGC AAATGCTTTGTTACATGAAATGCCAACGAAAAACATAGACCCGGATGTTTATACTTTTAGTATATTGGTCGATGCTTTAT GTAAGGAAGGGAAGGTGAAAGAAGCTAAAAATGTGTTAGCTGTGATGATTAAACAAGGTCTGAAACCTGATGTTGTTACT TATAGTTCCTTGATGGATGGATACTGCTTAGTTAATGAAGTGAGTAAAGCCCGGGATGTATTCAATGCTATGGCTCGGTG GGGAGTGACTCCTAATGTTCAGAGCTACTCTATTATGATTAATGGATTGTGTAAGATTAAAATGGTGGATGAAGCCTTGA ATCTCCTTGCAGAAATGGATTGCAAAAAGATTATTCCTAATACAGTGACCTACAGTTCTCTTATTGATGGTTTATGCAAA ACGGGGAGAGTCTCTCATGCTTGGGAGCTTCTTGATGAGATGCATGTGAAGGGTCAACCAGCCAATATAATCACCTATAA TTCTTTATTGGATGCTTTATGCAAGAGCCATCATGTTGACAAAGCAATTGCATTGATCAAGAAAATTAAAGACCAGGGTG TTCAGCCAGATTTATGCACATACAATATACTTATGGATGGACTATGCAAAGCTGGAAGACTTAAGGATGCGCAAGAGATT TTTCATGATCTTTTGATAAAAGGCTATCATATAACTGTCCATACATATACTGTTATGATCAATGGACTTTGTAAAGAAGG CTTGTTTGATGAAGCGTTGGCCTTGCTGTCAAAAATGGAAATTGAGGGTTGTACTCCTAATGCTATAACTTTTGAATCTA TTATCCGTTCACTCTTTGAAAAAGGTGAGAATGACAAGGCTGAGAAACTTCTTCGTGAAATGATTGCTAGAGGTCTACTG GAAAAAATTTAGATACACATGGAAAAGGATGATGGACTACACAATGGGCTCACTTTCTCCATAGCTAAAAACCATGTGTT CTTACTTGTCAGGTACATTTTGATATTGTAACAATAACAATGATTGATTTGTTCATTATGAGTATTGATATAACTATCCT TTTGGTAAGAGAAGCTTTGTTGCAGTGGTTGGAGTTGCTTTAGTGTGACTAGGAGGCCACATATTCAATAGAACCAACCA ATCCCAAATGCAATGTAAGGAGGCTGCCTATATAGACGCACAAATAGCCATCATTGTTTTTCCTCAATGTACTGTCAATG TACATCTACTTTAAGAGGTTTTTTTCAGTCAGTGCTCATTGTTAATGCTTCTGATTGAAAACAAAGCTCAAACAGGCATG ATTATTTGGAACCAGACATGATTATAGTTGATTTTATTCGCCAAATTAGAT
CDS sequence (LotjaGi2g1v0148600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCATTCTGAGGTTGATGAGGTTTCCCTTTCTTCCTAATCCCTCTTTTCTTCGTTCCTTTCACTCTCACTCTCACTC TCACTCTCACTCTCACTCTCGCTTTCATTCTTCCTTTCACAATCCTGGTGATGCCATCTCACACTTCAATCGCTTACTCC GAATGTGTCCTACTACCCCTTCCATCGTTGAATTTAACAAGATTTTAACTTCCCTTGTTAAGACCAAGAAGCATTACTCC ACCGCTATCTCGCTTTCTCACCAGATGGAGTTCACTGGAATCAAGCCAAGCCTTGTTACTATGAACATCTTGATCAATTG CTACTGCCACCTAGGTCAAATCAATTCTGCTTTTTCTGTACTCGCCAGAATTCTCAAGAGTGGTTATCAGCCTGATACCA TCACCTTCACTACTCTTATCAAAGGTCTCTGTCTTAGTGGCAAGGTTCAGCGAGCCCTCCAATTTCATGACGATGTGATA GCACAGGGATTTCGGTTGGATCAAGTCAGTTACGGAACCTTGATCAATGGGCTATGTAAAATAGGGGAAACCAGAGCTGC TTTGGAGTTGCTTAGGCGGATTCAAGGGCGAGGGATTAAACCTGATGTGGTAATGTACAGCACAATCATCGATAGCCTGT GTAAAGATAAACTTGTAAGTCATGCTTGCAATTTATATTCTGAAATGCTTGCCAAGGGAATATCTCCTAATGTAGTCACG TACAGTGCTTTAATATATGGCTTTTGCATTGTTGGTCAATTGAAACAAGCAAATGCTTTGTTACATGAAATGCCAACGAA AAACATAGACCCGGATGTTTATACTTTTAGTATATTGGTCGATGCTTTATGTAAGGAAGGGAAGGTGAAAGAAGCTAAAA ATGTGTTAGCTGTGATGATTAAACAAGGTCTGAAACCTGATGTTGTTACTTATAGTTCCTTGATGGATGGATACTGCTTA GTTAATGAAGTGAGTAAAGCCCGGGATGTATTCAATGCTATGGCTCGGTGGGGAGTGACTCCTAATGTTCAGAGCTACTC TATTATGATTAATGGATTGTGTAAGATTAAAATGGTGGATGAAGCCTTGAATCTCCTTGCAGAAATGGATTGCAAAAAGA TTATTCCTAATACAGTGACCTACAGTTCTCTTATTGATGGTTTATGCAAAACGGGGAGAGTCTCTCATGCTTGGGAGCTT CTTGATGAGATGCATGTGAAGGGTCAACCAGCCAATATAATCACCTATAATTCTTTATTGGATGCTTTATGCAAGAGCCA TCATGTTGACAAAGCAATTGCATTGATCAAGAAAATTAAAGACCAGGGTGTTCAGCCAGATTTATGCACATACAATATAC TTATGGATGGACTATGCAAAGCTGGAAGACTTAAGGATGCGCAAGAGATTTTTCATGATCTTTTGATAAAAGGCTATCAT ATAACTGTCCATACATATACTGTTATGATCAATGGACTTTGTAAAGAAGGCTTGTTTGATGAAGCGTTGGCCTTGCTGTC AAAAATGGAAATTGAGGGTTGTACTCCTAATGCTATAACTTTTGAATCTATTATCCGTTCACTCTTTGAAAAAGGTGAGA ATGACAAGGCTGAGAAACTTCTTCGTGAAATGATTGCTAGAGGTCTACTGGAAAAAATTTAG
Protein sequence (LotjaGi2g1v0148600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFILRLMRFPFLPNPSFLRSFHSHSHSHSHSHSRFHSSFHNPGDAISHFNRLLRMCPTTPSIVEFNKILTSLVKTKKHYS TAISLSHQMEFTGIKPSLVTMNILINCYCHLGQINSAFSVLARILKSGYQPDTITFTTLIKGLCLSGKVQRALQFHDDVI AQGFRLDQVSYGTLINGLCKIGETRAALELLRRIQGRGIKPDVVMYSTIIDSLCKDKLVSHACNLYSEMLAKGISPNVVT YSALIYGFCIVGQLKQANALLHEMPTKNIDPDVYTFSILVDALCKEGKVKEAKNVLAVMIKQGLKPDVVTYSSLMDGYCL VNEVSKARDVFNAMARWGVTPNVQSYSIMINGLCKIKMVDEALNLLAEMDCKKIIPNTVTYSSLIDGLCKTGRVSHAWEL LDEMHVKGQPANIITYNSLLDALCKSHHVDKAIALIKKIKDQGVQPDLCTYNILMDGLCKAGRLKDAQEIFHDLLIKGYH ITVHTYTVMINGLCKEGLFDEALALLSKMEIEGCTPNAITFESIIRSLFEKGENDKAEKLLREMIARGLLEKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| Gene3D | 35 | 194 | 160 | 2.7E-35 | ||
| SUPERFAMILY | 43 | 473 | 431 | 4.8E-6 | ||
| PANTHER | 59 | 206 | 148 | 3.5E-168 | – | |
| PANTHER | 59 | 206 | 148 | 3.5E-168 | – | |
| ProSiteProfiles | 61 | 96 | 36 | 7.87 | ||
| Pfam | 96 | 144 | 49 | 2.7E-14 | ||
| ProSiteProfiles | 97 | 131 | 35 | 11.213 | ||
| TIGRFAM | 99 | 133 | 35 | 4.1E-7 | ||
| ProSiteProfiles | 132 | 166 | 35 | 10.709 | ||
| TIGRFAM | 134 | 167 | 34 | 3.9E-5 | ||
| PANTHER | 139 | 281 | 143 | 3.5E-168 | – | |
| PANTHER | 139 | 281 | 143 | 3.5E-168 | – | |
| Pfam | 167 | 215 | 49 | 2.5E-11 | ||
| ProSiteProfiles | 167 | 201 | 35 | 12.31 | ||
| TIGRFAM | 169 | 203 | 35 | 2.5E-8 | ||
| Gene3D | 195 | 266 | 72 | 2.5E-23 | ||
| ProSiteProfiles | 202 | 236 | 35 | 11.794 | ||
| PANTHER | 204 | 425 | 222 | 3.5E-168 | – | |
| TIGRFAM | 204 | 238 | 35 | 9.9E-9 | ||
| PANTHER | 204 | 425 | 222 | 3.5E-168 | – | |
| Pfam | 236 | 285 | 50 | 9.9E-17 | ||
| ProSiteProfiles | 237 | 271 | 35 | 11.279 | ||
| TIGRFAM | 239 | 273 | 35 | 1.2E-5 | ||
| Gene3D | 267 | 336 | 70 | 7.8E-23 | ||
| ProSiteProfiles | 272 | 306 | 35 | 12.836 | ||
| TIGRFAM | 274 | 308 | 35 | 3.9E-8 | ||
| Pfam | 307 | 355 | 49 | 5.4E-18 | ||
| ProSiteProfiles | 307 | 341 | 35 | 12.244 | ||
| TIGRFAM | 309 | 343 | 35 | 4.2E-8 | ||
| Gene3D | 337 | 407 | 71 | 4.7E-24 | ||
| ProSiteProfiles | 342 | 376 | 35 | 11.553 | ||
| TIGRFAM | 345 | 378 | 34 | 2.8E-8 | ||
| Pfam | 376 | 425 | 50 | 4.2E-17 | ||
| ProSiteProfiles | 377 | 411 | 35 | 12.496 | ||
| TIGRFAM | 379 | 408 | 30 | 3.0E-9 | ||
| PANTHER | 407 | 549 | 143 | 3.5E-168 | – | |
| PANTHER | 407 | 549 | 143 | 3.5E-168 | – | |
| Gene3D | 408 | 475 | 68 | 2.6E-22 | ||
| ProSiteProfiles | 412 | 446 | 35 | 12.617 | ||
| TIGRFAM | 414 | 447 | 34 | 2.8E-8 | ||
| Pfam | 446 | 495 | 50 | 2.1E-15 | ||
| ProSiteProfiles | 447 | 481 | 35 | 11.816 | ||
| TIGRFAM | 449 | 480 | 32 | 1.1E-6 | ||
| Gene3D | 476 | 547 | 72 | 1.2E-19 | ||
| ProSiteProfiles | 482 | 516 | 35 | 13.252 | ||
| TIGRFAM | 484 | 518 | 35 | 1.2E-10 | ||
| Pfam | 513 | 544 | 32 | 1.9E-8 | ||
| ProSiteProfiles | 517 | 551 | 35 | 10.052 | ||
| TIGRFAM | 519 | 549 | 31 | 0.0013 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0148600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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