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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0151000 |
| Transcript ID | LotjaGi2g1v0151000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | zinc finger WD40 repeat protein 1; TAIR: AT4G25440.1 zinc finger WD40 repeat protein 1; Swiss-Prot: sp|Q9FNZ2|C3H48_ARATH Zinc finger CCCH domain-containing protein 48; TrEMBL-Plants: tr|A0A1J7GXB3|A0A1J7GXB3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0151000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:54337351..54344837) extracted from Lotus japonicus Gifu genome v1.2.
TCCTTGTCATCTGATCTAATCCAAAGCAAACTGATCCAAGGGTTGGGAAATTTTTAGTTTTTTAGTTTTAATCTGGGTAT TATGATTAATTTTTTTGGAAAAAAAAAGAATGACTTGGAAATACAATAAGAGTGTCAGCTCAATTAATGAAAGCCAGGTC AGACTCTGCTGTTAAAAAATTAACGGTTGGACCAAAATTGCTCACGGCACAAACATTGGGGATTAAAATTGCTCGTTTTA AAATAAGGGGACCAAAATTGCACAATCGTGAAACATGAGGGATGTAAAGAGGAATTAAGCCATTAATTAATTTCATACCG TCGTAGACCTCACGCACGCTTTTACGCGTCGTTTCGACGCATATTCTCCACCTCATCTGGATACTGCAAAAACACTACAA CTCATTACACACAAAATTAGGGCTTTTCTGCACTCAGATCCTAACCCTAAATTTCAACAACTGGTGTTTCCCACGAAGCT CAATTCCACACTCTACACTTGATGATCTCACTACACCTTCCTCCTCGTCCTCCTCTTCATCTTCACCCTCACGCGCGTTC AATTCGTGATCCTCGTTTCACCATTCGCAGCCCTCGATACACACCCACCATCTTCAATAGCCTCTTTTCATCGAATTGCG GCCAAAGTTAGAGTCTTTCTTGCCTCTTCCTTCGAAGCCCCATTCCAATTTGAACGCAGGGATTCAAGTTTTGGAGTAAT TTTTCGCTCTCTGCTTATATTCATGGACGTTGACGGTGGTAGTAAGCGCGTGTACCACAGGCTCGGTGGGCCCGGTGGAG ACGCGAGGAACCAGAAAGTGTGTTTTTATTGGCAAGCGGGCAAGTGTGATCGTCACCCGTGCCCGTATCTGCATAGCGAG GTGGTGCCTCCTCATTCCAATTCCAATGGTACTTCCTCCAAGAGGCCTCATGGGTATGCTGATAATTCGAGCTTCTCGGG GCCGCGGCGGAGCCAGAATTTTAGTACCTGGGGTCCTGGTGGTGGCCGCGGCGGCGGACGTGGTGGTGCTGGACGTGGAG GGGGAGTTGGTGGTGGGAGGGGAGTGGTTGTCAAGGCTGATAAAGTTTGTAATTATTGGGCTCAAGGGAGCTGTAGTTAT GGAGAGAGGTGTAAGTTCCTTCACTCTTGGAGTTTAGGTGATGGGTTTTCTTTGTTGACACAGCTTGATGGGCATACCAA GGTAAGAACAGAAATTAGTTTCCTGCAGACTTTGCTTACAGTGAAAACTATGCAATGGCAGAATGGTTTATCATTGAATT TTATGATATAAAGACACTTCTTTGTAATAATTACTATATTTTATGTTTTGGATATGTTGCAATGTCTTGTATATGGTTCA CTTTGAAGTGTGATATATTAAGGCAAACGCCGATGAATTATATTTTTATGTATTAAATGCAGCACTTCTTCAATGAATAC TATCGATTTCTGATTCTTTAACTTGTACTTTATATTGAGTGCATTTTTGTATATGGTACACTTTAACCTGTAGACTTTGC TTACAGTGAAACCTGTGCATGGCAGAATGGTTTATCATTGAATTTTATGATACAAAGACACTAATTTATAATCTTAATTT ACTATATTTTATGTTTTGGATATTTTGCTGGGATTGTATATGATTCACTTTCAAGTGTGATATTAAGGGAAACCTAATGA ATTATTGTTTGATGTATTAAATGCAGTACTTTTTCAGTTAGTACTTTTGATTTCTGATTCTTTAACTTAGTACTTTATGT TGAGTGTATTTTTGGGTAATTAGGAGTTGATGGGATGAGTTGTGGTTTTGTTGAATGAACAGGTTGTGAGTGGCATTGCC ATGCCGTCTGGTTCTGATAAGCTTTATACTGGAAGTACGGATGAGACCGTAAGGATTTGGGACTGTCAGTCTGGAAAGGT TGTTACTATTTGTTTTTCGTTCTGTTCTGGTGACTAGTTGCAGTTTTTGTTTCAATTTTTTAATACACGGACACCTCTTT TTAGAATGTTAAGCTTCATGAATTTGTATATGCAGAAGGATTACTTTTTTTTACCCTGAACTTTGGATTTTGTATTTGCC ATTTTGTTATTGAGGTTCCTGATCAAATTATTAAAAATTATGATTTTTAAACGTAGGAATCTATTTGTAGCGTTCTTTAA AATCATTTTAATTTTAATTAATATCACATTTCCTTTCTCTCTATTGTGTTTTCAAACCAGTAGTGAACAATATATATTTT TATTTTTTTCCTAGTTTCCTTTGGGGGCCAGAGAAAAGAAAGTAAGTTTGATTTTGATTTTGTTTGTCTATTATCCTATG CAGTGTATAGCTGTGATCACTCTTGGTGGTGAAGTAGGTTGTATGATCAGTGAAGGTCCCTGGGTTTTTGTTGGCATACC CAATTTTGTTAAGGTAATGATGAGCACAAATAGATATTTGATTTGTTTCCTCTCATTTTATATTCTGTCAGTTTTTATAA TAAGTACGTCAACTCTACTTTAGTGAAGGTTTTTTGAGATATTTCTTTCTGCCATTCATATCATCATGACTGATATCCTG TTTGGTTGATGACATTGGTGTTTCAGGCCTGGAACTCACAAAATTCAATGGAGCTAAGTTTAGATGGCCCGGTTGGGCAA GTTTATGCACTTGTTGTGACTAATGATTTGCTCTTTGCTGGTACGCAGGTAAATCCATTCTTTTCCATTGATTATGTATT TGTTTTATCTTGATGCAGTAATCCTGGTTTTGTACTACATTGTTGGTGCTTAAGGCCTGTTGGATGAAATTGGAAAGTGC ATTGTCATTTTCTTTTATACGCATTTTCATCTACTGAATGTCCACAAATTAATTTGCGATGATTATATTGAGATTAATTG TGAGGCTGATTAGGAATGCAGAGACAGAAACTCAGACATTCATGAAGAAACAATTTAGATTTTTGCAGAATGCCCAATTA TGGATACAATTTTACTGGTGCAAGTTTTTCACAGAAAATTTTAGAAGGAGAATCTAACATATAGGGAATTAGGGATCACT TCACCTCCCTAGCTCCTGAAGAAGATTTTAGGGTTCACCTTTCGGTGGGAGGGGAATGGAGGGAAGGGGGGAGGGTTTGG ATTTTTTTAAAGTTATCTTGTTTGGTTCAATTTTTAGTGGAGGATGGGAATTTGGGGGGGCAAAACCCCCTCATGACTCA ATTTTTGTCTCCCCTCCAGAAGTGAGGGGATATGGAGGGGAAATATTTCGTTAGACAAAAATGCCCTTAGTTTAAAAACT TTTGAAGTAAAGGAAGCTAAGGTAAATTTGTTTTAAATCCCCTTCCTCAGGACAAGGATTGGACGATGCTCTATAGGCAC TGACTATTAGTCAATAAAACAACTCAGTTTAGACTTTTAAGCCATATGATTGGCCTAGAAGCAATCACCAGCTGGATATG TGGGATATTCCCCTTGGGCCATTTGCTGTTGATTGGATCTAACAAAGGAATTTGCGTTGGGGTTGGGGGGGGGGACAGTT ATACTTATACCTCAAGTCTCACATTCATTGTTGCGAAACTCTTGAGTCAACTAAAAAAATCTTGCAAGTTTATGATTCCA CAACCACGTAGAGAAATTGGATTATCTTGCTTTAAAACTCGTTTCCACTTGCGCTAGACTAGTGTAGAATTGGTCAATCT TGCGTGAACTCTTGATTTTATGAAGGAGCCGGTGAGTCTGCTGGGAAATCTTAGTTCTGCCCAAAATGCAGTGTTATATG CATGGAATGCCAGGGCTAGGACTCAATAGTGACGTGTCATTCTGAGTCATTTGGTTCGTAGTTATGTTGCTGTCACCTTT TTTTTCCTTTTTTATTGCTTGTCCTTTGCTTTCATCTTGTCCTTGCTGCTTCTATCTGCAAACTGATTGAGCGTAGCTTT GATATTCCGTTGCTGCACTGATGGTTCCAAACCTTATTGAGGCTTTACTACTGTATTTGATTTGCTTTTTCTGCAAAATG ATCGAACTTTGTCCTTCATTTGTTGCTCATCAGTTTCTTCTCGTCCATTTTCTGTTGCTTGCCTAATCAAAGCTCAGTGA GATTTTCTGGTTGTGTTCTGGTTCATTAGTATTCCATGTTCTGTTTTGTGTTCTCTTTGGTTGTGTTTTATTATTGGTTT ATTGGTTGTTCTATGCCCCCTTTACAAAATGTCTTAACTTGGTGGCTCCAGCAACTTATTTTAAATTATTTCGATCTTTT ATACACTGATAGTTTTTTTTGTTTTTTTAATATTAGATTAGATAATGTGTAAGCTCCATGAGTTTTGCATAGACTCCCAA GTGTGACAAACTTGCTCACACTTAACATGTGAAGGATTGGCGGTGCCTTATAGAAGCACTAAGAACTAACTCCTAGGGCA ACTTGGTTAAGCCTTTTAACCTCTTTGCTCTCTTGTGTTCGTGCTCCTAGGATCTGGGAAAGTATTTTATTGAAACTAAT TGAAACATGTTTTCAAGCCTTTTTTACTGTAAAACATGAAAACAGAATGCACAACAATAACTCAATAAGTATGCTATATT TGAGTTTAGAGTACCATAATTTTTAATCTCAAGTGAAATACTTATCATGCAGGACGGATCTATATTGGTTTGGAAGTTTA ATGTGGTTACCAACTGCTTTGAGCCTGCTGCATCACTTAAAGGACATTCCCGTGGAGTTGTTTCATTATTTGTTGGAGCT AATAGACTTTACTCTGGTTCTATGGACAATACAATAAGAGTAAGTTCACCCAAACTCTCTGTGATAAACATCCGATCCAT TTTCCATTAAATTCTTTCTAACCAATGTAATACAAATGATAGGTTTTGGTTTGTTGATTTGATTCATCCAATTTGTTTTT GTCTTTTTAGGTCTGGAACCTTGAAACCTTGCAGTGTCTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTC TTTGCTGGGATCAGTTCCTTTTATCTTGTTCATTGGATAAAACAGTAAAGGTTGGTTTCACACTTTTTTGCTGATAGGAT TTGTTTGTAATTTTTTATTTTTTGGCTTGATTCTTTTGATTTCTGCAGATATGGGTTGCTACGGAAAGTGGTAACTTGGA GGAGACATATAGCCACAATGAAGAACATGTATGTATTCATCCCCCCCCCCCCCCCTGGATAGTTGGTCTTGTATATGTTG TTGCTTGTCAAAATGTTGATATTTCGTAACTGTAGGGAATAATTCCTTTTGAACACTTCCAGCAACTATCCTGAACTCCT ATCACCACTTGATGTAAATGGCTTAGAAAAATGCGCAATTTTGACATTCATCCAGATAGGAATTGATCAGAAATGTTTAT ATATATTTGAGTCTTTGGTGATTCATAATATTCTAAATGTTTTACCAGGTTAATATTTTGTGATAAGGAAAATAATTTTG GTTAATGAGATAAGAGTGAATTAATTGTAGTGGAGCTTAAGAAGTCCTCCAAATACATGGCAGTGTTGTTGTTACATTGA TATACATTATTTAAATACAACTCCTTTCGTCCTTAATTATAAGGTTCTCTGAAAGACAAGTATGCTTATTAAAAAAACAT GTAATGAGGTTAGTTGATGTATTGGTTTTAAAAAAGTGTATACAATATTCTACATTTACCCTTAATTAACCTATCGAAGT GTGGAAACACATCAATTATTAGTGCTAAACTGCTAATCAAAATTTTAAAATTACGAAAGTATAATAATACAAGGGGTATA CTTGGAAAATGATAATAAATATTTCTCGTATCTAGTAAGGGGTCTTATATAAAGGGACACCAAGTATATCTCTAAAGGGT CTTATAATTAGGGACGAAGGGAGTATTTAGAGTTATTCTTTTCTTCTACTTCTGTTATAGTGTGACGTGGCTTTCATGAT TTCTGATAATGCTGTGACTTGTTGTAGGGCATAGTTACCCTCTGTGGGATGCATGATTCACAAGGCAAGCCCATATTGCT TTGCTCTTGCAATGATAACACTGTGCGGCTCTATGATCTTCCATCGTAAGTAATTGACTTCCTTTCCATACTCCCATTTG GTGTGTGTCTGTGTAACTCAAGAAGAGAGCTCAACCTTTTATGCCAGAAAATCTGCATGTTTCATTTGTTTAGTGTTACA AACTAGCCTGGTTTATTGCTTGAGAAGTTTTTAATTCCACTTGTAGCATATAAAAGGTGTGAATATACCTTTGGCCCTCT GAGAAGTCAACATGAAATTAAGAGAGTTACGCTCTATTTTCTCCTATGTCTGGAGAGTGTCTTTGTTCTCTCTTTGCGTT AAAAGATAAATTGTAATAATTATTCTTTTACGTAGAAAGTCCACATTGTTCCTAAATATTGTGTTCCTAACTTCACAACT CAACTTTAGTTATGATGTTGCTTGTTGAATTGCATGGCACCCCACACTCGAACTCATTCTTGATTATTTGGTCCATTTCT TGTTCAGATTTGCAGAGAGAGGTAAGATATTCACAAAACAAGAGGTACGAGCAATTCAGACAGGTCCTAGTGGCATATTC TTCACTGGCGATGGAACTGGTCAAGTTAAAGTGTGGAATTGGATAACGGATCCAACTGCAGCACTCCAATAAAGGGACAC TTAGAATAAATAATGTGTTTCCATTGATTGTTTGAGCAGTTGTTGTGGTCCTCCTTTTTGTAATTTTTTAGCTGCAAGAA GGGAATTCACCATATGATGTGTTGGGGATTGGGAAGTGATCAAAAAGTGAGGGAAATGGAGTGTGTAATTTATGTTTTTG CGGAAGGTAGTCTTTTGTTTAGGATGTGAGCTCTGGCTTTAGTGTTAAGAGGGTTACCACCCTTGGCACAAAGCTTGCTC AAGTAGGCGTGCCTATTGAGTCTGTAACATTATGGAAAATCACATTATTTAGCATTAATTGCTCAACAAACACCGACCAA TGCGTATATATGAACACTGAATAAGTGTTCGTTACTTGGCATTTACAAGAAACTGGGAGAGGTCTTATATTTCATGTATT GTGTTCTCTTTTTTTTTTTCATGTCTTGTATTATGAACTCAGTGGATCACTCTTATTTTGTTTTTTTAATGCCTTCTGTT TCTGCACAAGGCTCAGATAGCATTTTCTCTTCAAAATGATTTCCACATTTTGAACTTTGAAGGCCACAATTTGTTTATTT AGTTCCCTTGTGCTAGAAATTTCTAACTGTCTAGCATGTTTATGCAATAATTTATCCGTGAAATTATGGTCCTTTGTGAT TGGCCATAAAACACCTGACCCTATCAACATGTCTTTTTAGTGATAAGCATAGGCTTTACTTGACATTAAACAGACTCGAA CTCTGTAGTCTCTCCTATGGCTGTGGTCAATTGGTCATCTCTAGATATATGACAACAATTGGATATCACTTTTTTATTTG AGGAATTGGATGGCTTATTGAGATTTGATAGGTGGGGCCACGGTCGG
CDS sequence (LotjaGi2g1v0151000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGTTGACGGTGGTAGTAAGCGCGTGTACCACAGGCTCGGTGGGCCCGGTGGAGACGCGAGGAACCAGAAAGTGTG TTTTTATTGGCAAGCGGGCAAGTGTGATCGTCACCCGTGCCCGTATCTGCATAGCGAGGTGGTGCCTCCTCATTCCAATT CCAATGGTACTTCCTCCAAGAGGCCTCATGGGTATGCTGATAATTCGAGCTTCTCGGGGCCGCGGCGGAGCCAGAATTTT AGTACCTGGGGTCCTGGTGGTGGCCGCGGCGGCGGACGTGGTGGTGCTGGACGTGGAGGGGGAGTTGGTGGTGGGAGGGG AGTGGTTGTCAAGGCTGATAAAGTTTGTAATTATTGGGCTCAAGGGAGCTGTAGTTATGGAGAGAGGTGTAAGTTCCTTC ACTCTTGGAGTTTAGGTGATGGGTTTTCTTTGTTGACACAGCTTGATGGGCATACCAAGGTTGTGAGTGGCATTGCCATG CCGTCTGGTTCTGATAAGCTTTATACTGGAAGTACGGATGAGACCGTAAGGATTTGGGACTGTCAGTCTGGAAAGTGTAT AGCTGTGATCACTCTTGGTGGTGAAGTAGGTTGTATGATCAGTGAAGGTCCCTGGGTTTTTGTTGGCATACCCAATTTTG TTAAGGCCTGGAACTCACAAAATTCAATGGAGCTAAGTTTAGATGGCCCGGTTGGGCAAGTTTATGCACTTGTTGTGACT AATGATTTGCTCTTTGCTGGTACGCAGGACGGATCTATATTGGTTTGGAAGTTTAATGTGGTTACCAACTGCTTTGAGCC TGCTGCATCACTTAAAGGACATTCCCGTGGAGTTGTTTCATTATTTGTTGGAGCTAATAGACTTTACTCTGGTTCTATGG ACAATACAATAAGAGTCTGGAACCTTGAAACCTTGCAGTGTCTACAGACACTAACAGAGCACACATCTGTTGTGATGTCT GTTCTTTGCTGGGATCAGTTCCTTTTATCTTGTTCATTGGATAAAACAGTAAAGATATGGGTTGCTACGGAAAGTGGTAA CTTGGAGGAGACATATAGCCACAATGAAGAACATGGCATAGTTACCCTCTGTGGGATGCATGATTCACAAGGCAAGCCCA TATTGCTTTGCTCTTGCAATGATAACACTGTGCGGCTCTATGATCTTCCATCATTTGCAGAGAGAGGTAAGATATTCACA AAACAAGAGGTACGAGCAATTCAGACAGGTCCTAGTGGCATATTCTTCACTGGCGATGGAACTGGTCAAGTTAAAGTGTG GAATTGGATAACGGATCCAACTGCAGCACTCCAATAA
Protein sequence (LotjaGi2g1v0151000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVDGGSKRVYHRLGGPGGDARNQKVCFYWQAGKCDRHPCPYLHSEVVPPHSNSNGTSSKRPHGYADNSSFSGPRRSQNF STWGPGGGRGGGRGGAGRGGGVGGGRGVVVKADKVCNYWAQGSCSYGERCKFLHSWSLGDGFSLLTQLDGHTKVVSGIAM PSGSDKLYTGSTDETVRIWDCQSGKCIAVITLGGEVGCMISEGPWVFVGIPNFVKAWNSQNSMELSLDGPVGQVYALVVT NDLLFAGTQDGSILVWKFNVVTNCFEPAASLKGHSRGVVSLFVGANRLYSGSMDNTIRVWNLETLQCLQTLTEHTSVVMS VLCWDQFLLSCSLDKTVKIWVATESGNLEETYSHNEEHGIVTLCGMHDSQGKPILLCSCNDNTVRLYDLPSFAERGKIFT KQEVRAIQTGPSGIFFTGDGTGQVKVWNWITDPTAALQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 436 | 436 | 5.6E-227 | – | |
| PANTHER | 1 | 436 | 436 | 5.6E-227 | – | |
| SMART | 21 | 46 | 26 | 0.22 | ||
| ProSiteProfiles | 21 | 47 | 27 | 10.775 | ||
| MobiDBLite | 50 | 101 | 52 | - | – | |
| MobiDBLite | 50 | 84 | 35 | - | – | |
| Gene3D | 108 | 143 | 36 | 1.4E-6 | – | |
| ProSiteProfiles | 111 | 137 | 27 | 14.164 | ||
| SUPERFAMILY | 112 | 135 | 24 | 1.44E-6 | ||
| SMART | 112 | 136 | 25 | 4.8E-6 | ||
| Pfam | 114 | 134 | 21 | 3.5E-8 | ||
| SUPERFAMILY | 136 | 431 | 296 | 7.05E-48 | ||
| SMART | 141 | 180 | 40 | 1.7E-5 | ||
| Pfam | 144 | 180 | 37 | 4.7E-4 | ||
| Gene3D | 144 | 201 | 58 | 1.1E-7 | ||
| ProSiteProfiles | 148 | 397 | 250 | 22.438 | ||
| ProSiteProfiles | 148 | 189 | 42 | 14.251 | ||
| ProSitePatterns | 167 | 181 | 15 | - | ||
| PRINTS | 167 | 181 | 15 | 6.9E-7 | ||
| Gene3D | 211 | 436 | 226 | 5.1E-35 | ||
| SMART | 220 | 257 | 38 | 0.8 | ||
| SMART | 264 | 301 | 38 | 0.0016 | ||
| Pfam | 267 | 301 | 35 | 9.4E-4 | ||
| ProSiteProfiles | 271 | 310 | 40 | 12.915 | ||
| PRINTS | 288 | 302 | 15 | 6.9E-7 | ||
| ProSitePatterns | 288 | 302 | 15 | - | ||
| SMART | 304 | 341 | 38 | 2.9E-4 | ||
| Pfam | 306 | 340 | 35 | 6.1E-4 | ||
| PRINTS | 328 | 342 | 15 | 6.9E-7 | ||
| SMART | 345 | 388 | 44 | 1.4 | ||
| SMART | 391 | 428 | 38 | 3.1 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi2g1v0151000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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