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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0154800 |
| Transcript ID | LotjaGi2g1v0154800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT5G62190.1 DEAD box RNA helicase (PRH75); Swiss-Prot: sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7; TrEMBL-Plants: tr|A0A151QN94|A0A151QN94_CAJCA DEAD-box ATP-dependent RNA helicase 7; Found in the gene: LotjaGi2g1v0154800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:55261458..55266126) extracted from Lotus japonicus Gifu genome v1.2.
CAACAATCCACCTCCAAACCTATAAAATCCCCAAAACCTTAACGAAACCCTTCCTCTTTCATCTCCTGCTTCAACCGCAA CTCCCAGCCACCGAAGCAGGAGAATCAAAAAAACCCTCACCGAACCCCGCCGCCACATTCGATCATTCCCACGGCGGCGA TGCCTTCTCTACTCCCTCTCTCCAACGGCGCCACCGCCATGAGCGAGAGTCCCAAAGACAAGTCGAAGAAGAAGAAGGAC AAGAAGAAGAGCGAAACCGTCCAAATCGACGCCGATTTGGAGGTGACGAGCTCCAAGAGCAAGAGCAAGAAGAGCAGCTC GAAGAAGCGGAAGAAGAGTTCCGATGAGGAGGAAGAGGAGCAGGAGAGGAGTGAGACTAGCTCTGAGCTCGTGGAGCCGA AGGCGAGTAAGAAGATGAAGAAGAAGATTAAGTTTGATGAGGATGGTGAAGAGGAGGAGGAAGAGGTGGTGGTTGAGAAG AAGAAGGAGGATCCGAATGCGGTTTCGAGGTTCAGGATTTCGGAGCCGTTGAGGGCGATTCTGAAGCAGAAGGGGATTGA ATCGCTGTTCCCCATTCAGGCTATGACGTTTGATACCATTCTCGATGGTGCTGATATGGTTGGTCGCGCTCGTACTGGTC AGGTCTGTAGTTTTCTTCCTTTCTTTTGATTCTCTGTGTTTGTGAGCTCATGAGTTTTGGAGAATGAAATAATTGTGTAG TTATCTTCATGGATGTAACTTTTAACTAAATAAATTTCTCAAATATAAATTCATCTCCAAATTTTTTAGGTGTGACTAAG TAATTCAGATTTGGTAAAAAAAATCTGGGGATGATAAATTAGGTGACTCTATGATAGATAAGGAACTAAGTAGTACCATG TTTATAACCAAAACAATTTTATTTGAGAGTTAAGTAGAAGTCTTTGATGAGTGTAATGTGATTCGGACCACATGATTAGA TAATTTGGAAGCCGCTGTCCGAATATTTTGCTTTCCACTTGTCTGTAAACTTATATTATCTATCTTTTGCTTCTTTGGTA AAATGCAGGGTAAAACTCTGGCCTTTGTGTTGCCCATACTTGAGTCTTTGACAAATGGTCCGGGCAAAGTGGCAAGAAAG ACTGGTTATGGGAGGTCTCCGAGTGTCCTTGTGCTTTTACCTACTAGGGAATTGGCCACTCAGGTATGATATGCATGAGC TGGTTGTTAGAGTATGTTTGTTTGCCATTTTATTTATGCGTACTTTTCTGTTGTGGTATATTTTGTGTTAGGTGTTTGCT GATTTTGAAGTTTATGGTTCGGCTATGGGATTGAATGCTTGCTGTTTATATGGTGGTGCTCCATATCATAGTCAAGAAAG TAATCTCAAACGAGGTGTTGATATTGTTATTGGAACACCGGGTCGCATAAAGGTTAATTTTTATTTCAGTAATACTTGTT TGGATACATGTAGTGGTTTTTCATTTTTTTCTATGTGATTGTTAATTACTGCAAAAGTCGATTATAGAAGCTTCACTCTG TATTTAAGACTATCAGTAAATTTGTATAGGACCATATTGAGAGGCAAAACCTTGACCTGAGCAAACTAAGGTTCCGTGTC CTTGATGAGGCTGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTCGAACGCATTCTAGGTATGATTTTGCCTAAATG TAAATTTTGAAGGCTTTATTGTATGAATATCTGCGCCAACTGTTGTGACATGTCAGTAGTTAACTATCTGAGATTGTCTA CTTTTAGTTGAATTTGGTATTTTTTCTGGTTCTGTAATATATTTCAGCATTACAATGATCTGTTTTATTTTTGCAGGTGA GGTAGATGATGTTAATAGAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGTCTGGGTTAAGCAGGTATGCATCTATC ATCTTTGTCGCCATTTCATGTTCTGATTGGGTTTTATTCAGTTGGATTTTTAGCTTATCCAACATTTTTTATTGCCAGAT TTCTACAAAATTTCTGAAACCAGATAAGAAAACTGCTGATCTTGTTGGGAATGAGAAAATGAAGGCTAGCACCAATGTTA GGCATATTGTTCTTCCATGTAGTAGTTCTGCCAGGGCGCAGCTTATCCCTGACATTATTCGCTGTTACAGCAGGTGATTT GTTGTATTCAATTTGTGATCGTCACAATATTAAGTATGTTTAGAGTTTAGAATTGACTTTTTGCATGTTGTTTCAGTGGA GGCCGAACCATTATTTTTACTGAGAAAAAAGAGTCTGCTTCTGAGCTTGCGGGCTTGTTGCCTGGAGCAAGAGCTCTCCA TGGTGACATACAGCAGTCACAACGGGAGGTAAAATTATATACAACTTTTGATATGATTATTGATTCTGTAGATTTTCATT GAACGGGTGTTGCAATGGTGACCTGTCCTGGAACCTTTGATGTTGTATTGGACTCTTACGTTTGCTTTATGGTTTTTGTT TTAAATTTGTAATGAAGGTTTGAGTGCCACTCTGTTTCCTGTTCCTTGCAGATTACGCTGAAAGGTTTTAGGTCTGGGAA ATTCATGACATTGGTGGCTACAAATGTGGCTGCTAGGGGTCTGGATATTAACGATGTTCAGTTGATTATCCAGGTACTCT TATTCATATATTTAATTTTTTATGATGTTATAAATCATTCTTTATATTCTTGTTTATCTGATGTGACATTGTATCTGATT TAGTGTGAGCCTCCACGGGATGTAGAAGCATATATCCATCGATCTGGGCGCACAGGAAGAGCCGGTATGTTTGGAGTTTG ATTATTTGTTAGGATAGAGAGATTGATGTTACCAAGTTTTCCGGTTACATATTTGGCTTTCGTTTTTCAGGCAATACTGG AGTTGCTGTAATGCTTTATGATCCAAGAAAGTCAAATTTTTCTAAAATAGAAAGAGAATCGGGTGTGAAGTTTGAACACA TATCTGCTCCCCAGCCTGATGATATTGCCAAAGCTGTTGGTGGGGAAGCTGCTGAATTGATTATCCAAGTTTCTGATAGG TATTTGCTTACTGCGTTTAACAGTGTCTTTTGCTGCTGGGTAGTTTTTATATTATTCTTTATTCTTATGTTTAATACTGC GAACATGTGTTGTAAATGCAGCGTGGTTCCTGCATTCAAGTCTGTTGCTGAGGACCTTCTGAAGAACTCTGGTTTATCAG CTGTTGAGTTACTTGCAAAAGCTCTTGCCAAGGCTGTTGTGAGTCCAATCATTTTCCATATTCTCTCCTTGTCTTTTCCC TACAATTTATTTTTGTTTTACAGTAAAATCTTTATCTTCTCTTTTTTTCTTCTGATCTGGGAAAACATCATGTTATTTGC AGGGTTTTACTGATATAAAGAAAAGATCACTGCTGACTTCCATGGAGAATTATGTTACATTACTTCTCGAGACTGGAAGA TCTATCCACACCCCATCGTGAGAACTTAACTACAGATAATTAGGACTATCTTACTTGTATCAGTATCTTGGATGATCTTA GTGCTTATAGTCTTGTGGTTTGGATATATTACTATTGAGTGTAGAGTTATTTAGTTTTCAAGGTTATCAAACTGCACTTG AATTATCAGTTTGTTTTTTTGTCATGCATTTTGTTGTGTTTGACCTTTTGATTTTGTTGGTTGTTATCAGCTATGCTTTT GGAATCTTGAGGAGATTTGTGCCTGAGGAGAAGGTTGATGGTGTGCAGGGTCTTTCTCTCACTGCAGATGGAACTGGTGC TGTGTTTGATGTACCAGCCAATGATTTAGATGCATTCCTTGCGGGTAAAATTTTACCTAACTGTTGACTTAGTATTCTGA TCATTTTAAAAAGAATTCGAACTTTTACCTTTTCCGACATAGATATTCTATATGGACTGGCATCCTTAAACTTTCATTGC TTTTCATGAAGATTGTAATTATGACTAGGTCAACCTGTCTTTCAAGCTTTAACTATCACTAGACACTAGTTTACAATTAG CATTGTAAGAATTCAACATGTAGCTTTTAGTCTTGGTCAATATATTCAATTCTATTGTGTTTGCTCTTCAGGTCAGAAGA ATGCTGGTAATGTAAGCCTAGAGGAGGTAAAACTATTGCCACGTTTGCAAGAAAGGGACCAATCAAGAGGGGGCAGAGGG GGTTTTGGAGGTGGCGGGAGTAGGTTTGGGAGAGGTGGCCGTGGGTTTTCAAGTGGTGGTAGAGGTTATGGAGGCCGAGG TGGAGGTGGTAGGAGATGGTAAGAGACTATGAGTTGAGTGATCACTATGCTCATTATGATCAGGGAGCATAATGGCATTA ACTTTTGCTGTGTTATCTGCTGCCACCACCGCCCCTCAATTTTGCTGGCCGTCTAAAACCCTACATGGGGTGGTCTAATT TTTGATAATTCTTTATGTTCAGTGTCTCCCAATTAGTTCAATTTTGACAGGAAAATGTACTAGTTAAGTTTCTATATGTG ACAAACAAGGACGAGTTTTTAAGTGTATGATTGATTATGACATCGACAATGGTGAAAAATATATATATTCTGTCATTTAT TTGTGTTTAGCTAATTTATTTTCTTTTCTTCACATGGTTTTCATATTTGCTCTCCCCTGAGCGTTCAATTTTTATAATTC TCTTAATAGAGTAGAGTGGAGTTTGTTTA
CDS sequence (LotjaGi2g1v0154800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTCTCTACTCCCTCTCTCCAACGGCGCCACCGCCATGAGCGAGAGTCCCAAAGACAAGTCGAAGAAGAAGAAGGA CAAGAAGAAGAGCGAAACCGTCCAAATCGACGCCGATTTGGAGGTGACGAGCTCCAAGAGCAAGAGCAAGAAGAGCAGCT CGAAGAAGCGGAAGAAGAGTTCCGATGAGGAGGAAGAGGAGCAGGAGAGGAGTGAGACTAGCTCTGAGCTCGTGGAGCCG AAGGCGAGTAAGAAGATGAAGAAGAAGATTAAGTTTGATGAGGATGGTGAAGAGGAGGAGGAAGAGGTGGTGGTTGAGAA GAAGAAGGAGGATCCGAATGCGGTTTCGAGGTTCAGGATTTCGGAGCCGTTGAGGGCGATTCTGAAGCAGAAGGGGATTG AATCGCTGTTCCCCATTCAGGCTATGACGTTTGATACCATTCTCGATGGTGCTGATATGGTTGGTCGCGCTCGTACTGGT CAGGGTAAAACTCTGGCCTTTGTGTTGCCCATACTTGAGTCTTTGACAAATGGTCCGGGCAAAGTGGCAAGAAAGACTGG TTATGGGAGGTCTCCGAGTGTCCTTGTGCTTTTACCTACTAGGGAATTGGCCACTCAGGTGTTTGCTGATTTTGAAGTTT ATGGTTCGGCTATGGGATTGAATGCTTGCTGTTTATATGGTGGTGCTCCATATCATAGTCAAGAAAGTAATCTCAAACGA GGTGTTGATATTGTTATTGGAACACCGGGTCGCATAAAGGACCATATTGAGAGGCAAAACCTTGACCTGAGCAAACTAAG GTTCCGTGTCCTTGATGAGGCTGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTCGAACGCATTCTAGGTGAGGTAG ATGATGTTAATAGAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGTCTGGGTTAAGCAGATTTCTACAAAATTTCTG AAACCAGATAAGAAAACTGCTGATCTTGTTGGGAATGAGAAAATGAAGGCTAGCACCAATGTTAGGCATATTGTTCTTCC ATGTAGTAGTTCTGCCAGGGCGCAGCTTATCCCTGACATTATTCGCTGTTACAGCAGTGGAGGCCGAACCATTATTTTTA CTGAGAAAAAAGAGTCTGCTTCTGAGCTTGCGGGCTTGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATACAGCAGTCA CAACGGGAGATTACGCTGAAAGGTTTTAGGTCTGGGAAATTCATGACATTGGTGGCTACAAATGTGGCTGCTAGGGGTCT GGATATTAACGATGTTCAGTTGATTATCCAGTGTGAGCCTCCACGGGATGTAGAAGCATATATCCATCGATCTGGGCGCA CAGGAAGAGCCGGCAATACTGGAGTTGCTGTAATGCTTTATGATCCAAGAAAGTCAAATTTTTCTAAAATAGAAAGAGAA TCGGGTGTGAAGTTTGAACACATATCTGCTCCCCAGCCTGATGATATTGCCAAAGCTGTTGGTGGGGAAGCTGCTGAATT GATTATCCAAGTTTCTGATAGCGTGGTTCCTGCATTCAAGTCTGTTGCTGAGGACCTTCTGAAGAACTCTGGTTTATCAG CTGTTGAGTTACTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTTTACTGATATAAAGAAAAGATCACTGCTGACTTCCATG GAGAATTATGTTACATTACTTCTCGAGACTGGAAGATCTATCCACACCCCATCCTATGCTTTTGGAATCTTGAGGAGATT TGTGCCTGAGGAGAAGGTTGATGGTGTGCAGGGTCTTTCTCTCACTGCAGATGGAACTGGTGCTGTGTTTGATGTACCAG CCAATGATTTAGATGCATTCCTTGCGGGTCAGAAGAATGCTGGTAATGTAAGCCTAGAGGAGGTAAAACTATTGCCACGT TTGCAAGAAAGGGACCAATCAAGAGGGGGCAGAGGGGGTTTTGGAGGTGGCGGGAGTAGGTTTGGGAGAGGTGGCCGTGG GTTTTCAAGTGGTGGTAGAGGTTATGGAGGCCGAGGTGGAGGTGGTAGGAGATGGTAA
Protein sequence (LotjaGi2g1v0154800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSLLPLSNGATAMSESPKDKSKKKKDKKKSETVQIDADLEVTSSKSKSKKSSSKKRKKSSDEEEEEQERSETSSELVEP KASKKMKKKIKFDEDGEEEEEEVVVEKKKEDPNAVSRFRISEPLRAILKQKGIESLFPIQAMTFDTILDGADMVGRARTG QGKTLAFVLPILESLTNGPGKVARKTGYGRSPSVLVLLPTRELATQVFADFEVYGSAMGLNACCLYGGAPYHSQESNLKR GVDIVIGTPGRIKDHIERQNLDLSKLRFRVLDEADEMLRMGFVEDVERILGEVDDVNRVQTLLFSATLPVWVKQISTKFL KPDKKTADLVGNEKMKASTNVRHIVLPCSSSARAQLIPDIIRCYSSGGRTIIFTEKKESASELAGLLPGARALHGDIQQS QREITLKGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSNFSKIERE SGVKFEHISAPQPDDIAKAVGGEAAELIIQVSDSVVPAFKSVAEDLLKNSGLSAVELLAKALAKAVGFTDIKKRSLLTSM ENYVTLLLETGRSIHTPSYAFGILRRFVPEEKVDGVQGLSLTADGTGAVFDVPANDLDAFLAGQKNAGNVSLEEVKLLPR LQERDQSRGGRGGFGGGGSRFGRGGRGFSSGGRGYGGRGGGGRRW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 105 | 105 | - | – | |
| MobiDBLite | 1 | 16 | 16 | - | – | |
| MobiDBLite | 17 | 36 | 20 | - | – | |
| SUPERFAMILY | 56 | 283 | 228 | 2.57E-11 | ||
| PANTHER | 59 | 670 | 612 | 1.1E-233 | – | |
| PANTHER | 59 | 670 | 612 | 1.1E-233 | – | |
| Gene3D | 61 | 326 | 266 | 4.5E-69 | – | |
| MobiDBLite | 73 | 94 | 22 | - | – | |
| ProSiteProfiles | 113 | 141 | 29 | 7.099 | ||
| CDD | 124 | 321 | 198 | 3.88076E-87 | – | |
| SMART | 132 | 344 | 213 | 3.9E-48 | ||
| Pfam | 137 | 314 | 178 | 3.6E-47 | ||
| ProSiteProfiles | 144 | 326 | 183 | 27.573 | ||
| SUPERFAMILY | 191 | 471 | 281 | 1.5E-62 | ||
| ProSitePatterns | 270 | 278 | 9 | - | ||
| Gene3D | 337 | 563 | 227 | 5.1E-42 | – | |
| CDD | 341 | 467 | 127 | 4.54285E-46 | – | |
| ProSiteProfiles | 355 | 497 | 143 | 19.97 | ||
| Pfam | 359 | 458 | 100 | 1.0E-24 | ||
| SMART | 381 | 458 | 78 | 1.5E-25 | ||
| Pfam | 547 | 642 | 96 | 1.6E-27 | ||
| SUPERFAMILY | 551 | 632 | 82 | 1.41E-22 | ||
| CDD | 554 | 639 | 86 | 5.94391E-34 | – | |
| Gene3D | 564 | 634 | 71 | 3.1E-6 | – | |
| MobiDBLite | 641 | 685 | 45 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi2g1v0154800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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