Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0161800 |
| Transcript ID | LotjaGi2g1v0161800.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G66520.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520; TrEMBL-Plants: tr|A0A0B2QXA0|A0A0B2QXA0_GLYSO Pentatricopeptide repeat-containing protein; Found in the gene: LotjaGi2g1v0161800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:56734367..56737580) extracted from Lotus japonicus Gifu genome v1.2.
GGGAAAAATTGAAGTGGATTTGACTCAAAGCACCGTTGACAAGTCTCAGATTTCTCCTTTCGATAGTGTTGGTATAACAC TAGGGCCAGAGCAAAACAGGCCCGTATAATTTGCCAATTTGCAATAACAAAGTAAGGCCTAACCCATGCAAAACAGGCCC AGTCTGGGACGAAACGCTTGGGCTATATGTCAATTGTCTAGTTATTGACGAAAAATTTGTCTAGTTGAATTCATAGTAAC CAGAACTGAAACCTTTACATAACATGAGTCGGTTCTGCTCAACATTAACAAAACCTTTTCACTCTGATCATTGTTGTAGA CTTGCCTCTTTGGTTGACACATGCAAATCAATTCAACAAATTAAGCAGACTCATGCCCAATTAGTCACCACAGCTCTAAT CTCACACCATGTTTCAGCCAACAAGTTCCTTAAGCTTGTTGCTGATGCTTCTCTTTCATATGCCCACAAACTGTTTGATC AAATTCCTCAGCCAGACTTATTCATTTACAACACCATGATCAAAGCACATTCTTTGTCACCCAGTTCTTGCAATGATTCC CTCATGGTGTTCCGCTTACTAACCCGGGATTCGGGTCTTTCTCCAAATCGATATAGCTTTGTGTTTACTTTCGGTGCCTG TGGAAATGGGTTGAGTGTGCAGGAAGGGGAGCAGGTTCGATCTCATGCTGTAAAGGTTGGTTTGGATAGCAATGTCTTTG TTGTGAATGCCTTGATTGGTATGTATGGAAAGTGGGGACTTGTGGAGTATGGCCGAAAAGTTTTTGAATGGGCGGTGGAT AAAGACTTGTATTCATGGAATACCATGATTGCTGCCTACGTTGGATCTGGTAACATGAGTCAAGCTAAGGAATTGTTTGA TGAAATGCAAGAACAAGATGTGGTGTCATGGAGCACTATAATTGCTGGTTATGTTCAGGTATTGCTGGATTGGAAAGTTA ACAAAATAAATGATTGTCTTGTTGCTCTGAAGTGGACATTGAACAAGTATGCAACTAAAAGTAAATTTTTTGATGTGTTT GAATTGATTATCTCAGTACCCTGTCTAAATTTACTTCATACTATGTAGGTTGGCTGTTTCATGGAGGCTTTGGATTTCTT CCACAGGATGTTGCAAGTAGGTCCGAAACCAAATGAATATACCCTTGTAAGTGCTCTTGCAGCCTGTTCAAATCTAGTAG CACTGGATCAAGGAAAGTGGATCCATAGTTTCATTGGCAGGGGAGAGATTAAGATGAATGAGCGGCTTCTTGCTAGCATC ATTGACATGTATGCAAAGTGTGGAGAGATTGAATCTGCATCAAGAGTTTTCTGGGAACACAATGCGAAGCGAAAAGTTTG GCCATGGAATGCCATGATTGGTGGGTTTGCGATGCATGGAAAACCTTCTGAGGCTATCAAAGTCTTTCAAAAAATGAAGG TTGAAAATGTTTCTCCTAATAAAGTCACGTTCGTTGCCTTATTAAATGCTTGTAGCCATGGCTACATGGTTGAGGAGGGA AAATTATATTTCAGATTGATGGTTAGTGATTATGGAATCATCCCAGAAATAGAGCATTATGGATGCATGGTTGATTTACT TAGTCGCGCAGGGCTCTTGAAGGAGGCTGAAGACATGATTTCAAGCATGCCCATGGCTCCAGATGTTGCAATATGGGGAG CAGTGTTGAATGCTTGTAGAATCTATAAAGATATGGAGCGTGGATATAGAATCGGCAGGATAATCAAAGAAATGGATCCT AACCATGTAGGGTGTCATGTTCTATTGGGAAATATATATTCTTCATCTGGGAGATGGAATGATGCAAGAATGCTGCGAGA GAAGAGTGAAATCAGTACTGCCACCAAAAAAATTCCTGGTTGCAGCTCAATTGAATTGAATGGGACATTCTATCAATTCC TTGTCGGGGATCGGTCCCATCCTCAAAGTAGGGAGCTTTATTCATTTTTGGATGAGATGACAACCAAGTTGAAGATTGCT GGGTATGTTCCAGTGTTTGGGGAACTATTGCTTGATATTGATGATGAGGAAGATAAAGAGACCGCTCTTTCTGTACACAG TGAGAAGCTCGCTATTGCTTTTGGATTATTGAACACAGCACCTGGAACTCCAATTCGTATTGTGAAGAATTTAAGAGTTT GTAGGGATTGTCATCAAGTAACGAAGTTCATCTCCAAGGTTTATGATCGTGTAATTATAGTTCGAGACAGGACAAGGTAT CACCACTTCAAAGATGGAATCTGTTCTTGCAAAGACTACTGGTAGATAAGAAAAGTGTTACACAACACATGTCAGATAAA TCTCTACCTGCTTGTTTCCCTAACTCCCTTGCTCCTTACATACTAGTATTTGACAAGGACAGATTCATGTAGCCAACCCC ACTCATTGGTAAAAGGTTTGGTAGTTATTGTTATTGCTGTATATAATCAGCTCCTTTTGGAAGATAATGATAAGAAATAA AAGAGGTAAAGTTTTCAATATTTGCATCGTTGGCCAGGTATTCAATTGGCTTTATTAAAAGCTGGGATTCTTGCTTCATA TACTTTTGTGTGATTCTTGAAGACTGTAACCTCTTTGTGGTTGTCAATTCTCTACGGCTTCTAATAATGAAATTTGCCTG AGGTTTGTCAACTTCCATTTCTATTGTATACACGTGCTGAATAAACGATAGCTTGATTTGGAAACTCAAGTTCGTTCCTC TTGGAACAGGTAAGGTATACATGTTGAGGATTAAATTGATGTGTAGCTCTTGGCCATCATAAACACTTCATTTATCTGAA AAAAATCTCAGGTGTTATTTTTCAGTCCAACATTATTTTATCTTCGTGATTTTGGGTGTAGAACAAATTTATGTATGACA GGTAAAGATTTGTCCACTTTGAACCAAATTCAACTTTTAGTAATAGTTTTCCTGAATGATTCCTTCCCATAGCCCTCATT TTTGGCATTGGAGTTTGCAGGTGATCGAGAGATGGCATTTGACTATAGGAGTATGTCAAAGACTAGAGAGTGAGCGAGAC AGAGGGAGAGCAATTTAATTTTAGAGAAAATAGATATATGGAGAATGGAAGGTAATAATATGATGGGGTTCTGCTTCACT AAAGTGAGAGATGGGTAAACTAAGTCATGTTTACTTTGGTTGAGTTGTTTTATTGACTTTTTAAAATAGGTATTTGTAAT GATTTACTTTATCC
CDS sequence (LotjaGi2g1v0161800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTCGGTTCTGCTCAACATTAACAAAACCTTTTCACTCTGATCATTGTTGTAGACTTGCCTCTTTGGTTGACACATG CAAATCAATTCAACAAATTAAGCAGACTCATGCCCAATTAGTCACCACAGCTCTAATCTCACACCATGTTTCAGCCAACA AGTTCCTTAAGCTTGTTGCTGATGCTTCTCTTTCATATGCCCACAAACTGTTTGATCAAATTCCTCAGCCAGACTTATTC ATTTACAACACCATGATCAAAGCACATTCTTTGTCACCCAGTTCTTGCAATGATTCCCTCATGGTGTTCCGCTTACTAAC CCGGGATTCGGGTCTTTCTCCAAATCGATATAGCTTTGTGTTTACTTTCGGTGCCTGTGGAAATGGGTTGAGTGTGCAGG AAGGGGAGCAGGTTCGATCTCATGCTGTAAAGGTTGGTTTGGATAGCAATGTCTTTGTTGTGAATGCCTTGATTGGTATG TATGGAAAGTGGGGACTTGTGGAGTATGGCCGAAAAGTTTTTGAATGGGCGGTGGATAAAGACTTGTATTCATGGAATAC CATGATTGCTGCCTACGTTGGATCTGGTAACATGAGTCAAGCTAAGGAATTGTTTGATGAAATGCAAGAACAAGATGTGG TGTCATGGAGCACTATAATTGCTGGTTATGTTCAGGTTGGCTGTTTCATGGAGGCTTTGGATTTCTTCCACAGGATGTTG CAAGTAGGTCCGAAACCAAATGAATATACCCTTGTAAGTGCTCTTGCAGCCTGTTCAAATCTAGTAGCACTGGATCAAGG AAAGTGGATCCATAGTTTCATTGGCAGGGGAGAGATTAAGATGAATGAGCGGCTTCTTGCTAGCATCATTGACATGTATG CAAAGTGTGGAGAGATTGAATCTGCATCAAGAGTTTTCTGGGAACACAATGCGAAGCGAAAAGTTTGGCCATGGAATGCC ATGATTGGTGGGTTTGCGATGCATGGAAAACCTTCTGAGGCTATCAAAGTCTTTCAAAAAATGAAGGTTGAAAATGTTTC TCCTAATAAAGTCACGTTCGTTGCCTTATTAAATGCTTGTAGCCATGGCTACATGGTTGAGGAGGGAAAATTATATTTCA GATTGATGGTTAGTGATTATGGAATCATCCCAGAAATAGAGCATTATGGATGCATGGTTGATTTACTTAGTCGCGCAGGG CTCTTGAAGGAGGCTGAAGACATGATTTCAAGCATGCCCATGGCTCCAGATGTTGCAATATGGGGAGCAGTGTTGAATGC TTGTAGAATCTATAAAGATATGGAGCGTGGATATAGAATCGGCAGGATAATCAAAGAAATGGATCCTAACCATGTAGGGT GTCATGTTCTATTGGGAAATATATATTCTTCATCTGGGAGATGGAATGATGCAAGAATGCTGCGAGAGAAGAGTGAAATC AGTACTGCCACCAAAAAAATTCCTGGTTGCAGCTCAATTGAATTGAATGGGACATTCTATCAATTCCTTGTCGGGGATCG GTCCCATCCTCAAAGTAGGGAGCTTTATTCATTTTTGGATGAGATGACAACCAAGTTGAAGATTGCTGGGTATGTTCCAG TGTTTGGGGAACTATTGCTTGATATTGATGATGAGGAAGATAAAGAGACCGCTCTTTCTGTACACAGTGAGAAGCTCGCT ATTGCTTTTGGATTATTGAACACAGCACCTGGAACTCCAATTCGTATTGTGAAGAATTTAAGAGTTTGTAGGGATTGTCA TCAAGTAACGAAGTTCATCTCCAAGGTTTATGATCGTGTAATTATAGTTCGAGACAGGACAAGGTATCACCACTTCAAAG ATGGAATCTGTTCTTGCAAAGACTACTGGTAG
Protein sequence (LotjaGi2g1v0161800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRFCSTLTKPFHSDHCCRLASLVDTCKSIQQIKQTHAQLVTTALISHHVSANKFLKLVADASLSYAHKLFDQIPQPDLF IYNTMIKAHSLSPSSCNDSLMVFRLLTRDSGLSPNRYSFVFTFGACGNGLSVQEGEQVRSHAVKVGLDSNVFVVNALIGM YGKWGLVEYGRKVFEWAVDKDLYSWNTMIAAYVGSGNMSQAKELFDEMQEQDVVSWSTIIAGYVQVGCFMEALDFFHRML QVGPKPNEYTLVSALAACSNLVALDQGKWIHSFIGRGEIKMNERLLASIIDMYAKCGEIESASRVFWEHNAKRKVWPWNA MIGGFAMHGKPSEAIKVFQKMKVENVSPNKVTFVALLNACSHGYMVEEGKLYFRLMVSDYGIIPEIEHYGCMVDLLSRAG LLKEAEDMISSMPMAPDVAIWGAVLNACRIYKDMERGYRIGRIIKEMDPNHVGCHVLLGNIYSSSGRWNDARMLREKSEI STATKKIPGCSSIELNGTFYQFLVGDRSHPQSRELYSFLDEMTTKLKIAGYVPVFGELLLDIDDEEDKETALSVHSEKLA IAFGLLNTAPGTPIRIVKNLRVCRDCHQVTKFISKVYDRVIIVRDRTRYHHFKDGICSCKDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 20 | 163 | 144 | 1.4E-9 | ||
| PANTHER | 43 | 209 | 167 | 6.8E-92 | – | |
| ProSiteProfiles | 78 | 114 | 37 | 6.928 | ||
| ProSiteProfiles | 150 | 180 | 31 | 6.708 | ||
| Pfam | 153 | 175 | 23 | 0.72 | ||
| Gene3D | 167 | 276 | 110 | 1.3E-21 | ||
| ProSiteProfiles | 181 | 215 | 35 | 11.926 | ||
| TIGRFAM | 183 | 214 | 32 | 5.1E-8 | ||
| SUPERFAMILY | 183 | 477 | 295 | 1.34E-5 | ||
| Pfam | 212 | 258 | 47 | 2.6E-8 | ||
| PANTHER | 213 | 272 | 60 | 6.8E-92 | – | |
| TIGRFAM | 214 | 248 | 35 | 1.4E-6 | ||
| ProSiteProfiles | 216 | 246 | 31 | 7.837 | ||
| PANTHER | 264 | 478 | 215 | 6.8E-92 | – | |
| ProSiteProfiles | 282 | 312 | 31 | 6.5 | ||
| Pfam | 288 | 307 | 20 | 1.2 | ||
| Gene3D | 308 | 495 | 188 | 5.1E-30 | ||
| ProSiteProfiles | 314 | 348 | 35 | 11.159 | ||
| TIGRFAM | 318 | 349 | 32 | 1.3E-7 | ||
| Pfam | 318 | 361 | 44 | 1.8E-12 | ||
| ProSiteProfiles | 349 | 384 | 36 | 6.785 | ||
| ProSiteProfiles | 385 | 415 | 31 | 6.884 | ||
| Pfam | 388 | 412 | 25 | 0.023 | ||
| Pfam | 488 | 613 | 126 | 3.1E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0161800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…