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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0169200 |
| Transcript ID | LotjaGi2g1v0169200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | plant/protein (Protein of unknown function, DUF599); TAIR: AT4G31330.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|P10747|CD28_HUMAN T-cell-specific surface glycoprotein CD28; TrEMBL-Plants: tr|A0A072UA46|A0A072UA46_MEDTR Plant/F12B17-70 protein; Found in the gene: LotjaGi2g1v0169200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:58224697..58228370) extracted from Lotus japonicus Gifu genome v1.2.
GCATTATTCAACTCAGGTGGAAATAAGAGGGAATTTCCCCAAAGAGAAGCTAGCTAGTCCCGGAAGGAAAAGTTTTTTAG AAAATGGAATGGAAAAAATATTACATGGACATGATGCTTGTGCCATTGGGGTTAGTCATCATCCTTGCATATCATGTCTT GTTATGTCACAAGTGTCGGACACAGCCTTTCACCACAATCATGGGACGAGATGCTGATGGTCGCCGATTTTGGGTTGGTG CCATGATGAAGGTAATATTCATACACACATATATCAAGTTATCAACGACTCAATTACTGATCTGATGGCATTTTACCAAT TTAAAAAGTACCACTACATCTACTTAATTGGATTGCTTGCATGAATGCTGAAATAAATATTGTTAAACAGTTTAATTTTA AGTGGATACACGTTGAACTCAACACGGTAAAATCGATCATATTTCTCTGATTTACGTTAAGTTTAATGTGACAAATTCTA ACTTCTCTATTGATACTTTAAACTATGTGAAAACACGTTAGCATTTACATCAAGGCCAAACAAAACATATACTAGTATAA TTGTTTTTTATAGGCAAATGTTAGTTGTTAGTAATGTTAGTAAATTAGTTCTCCTCAGGGTTCGAACCCTTCACCCTTCA CCCTTCATCCCACTCAGCCCTTATATCTCTAGTTTTTACCACTTGAGCTATCATTCATTGACATATACTACCATAATTAA CGAAATTAAAATTTAACTTGAATCTAACTCTGTAAGAATACAGGGTGAGAAATTTTTCTAACTTTTTTTGTATAAGCTAA TGAATTGAATAAATAGGAGTACAAAAGTTACTCCAACCTACCGTACAAACATGAAAAAAGGAGAAACAGAATAGAAAACA AACAGCCCTGAAACAGAGGGGAGCAAACTATTAAGAAAAACACACAGTGCCCCAAGCTAACTTAACAACCTACTAGTTGA GGCCGAAAATCATCAACTTCAAAAAGCCCTGCAAATGTACAGGTCCAGCTATCAGGAAAAAACAGAGGCAGAAAAGTGCG GGGAGGAATTTAGCATACATAAATAACAGCTTGTGTAAGGTTACACAAGTGCTTTTTGACCTGCAATAGGAAGTTTAGCA GGTAATTCTTATTTTTGAAAAATAAAATATTTAATAAATTATAATATAATTAGGGAAATAGTTAGTGAATGATTATAGTT ATAGGAAAAATTAATTAATTATCACCCAATTCACCGCTCCCAAATTCGTTATCCCCAAACCGATTCATGACTTTCTTCAT CTTCAACTCCAAAGCTTAGGGTTCGTTCCCATTCCCGATCTGCTGAACCCCTTCATCCTCCATCTCTTCTTTTTCGATCT ACGACGCGAAGGTTGCTGGTTGTTCGTGACTGTCGTTCGTTCGATTATGCGCGGTTCGTCGTGGGTGGGTCGCTTACGGT GGGTAGGTTTGTGATTATTTGTGTTTTTCTAGAAGATCTGGGTATATGGTGAGGGTTAACTAGACAGGTTTCAATTTCGC TGGTGGTGGCGAACGATTTGGTGATGGAGGCCATGTTTACCCAGATTTATTCCTCAATCACTGTGTTTCAGATCTGCTGG TGGTGGTGAACGATCTGGGTTCCCCCCCCTTTTAAATCTGGTTTGTTCTTCATCCACTCAACAAACCAGTTCAAGATCTG ATGGAGGTAGACCCAGATTTATTCTTCAGATCAGATCATACAAGAAATGGTGGGAATATTCTGAACTGGAGGAAGAGGAT TCAAGATTTCAACAATTTTGCTGAAGAGTTGCCTCTCTCTGTCTTCCCTGGGTAGCTGATGTGTTTTCCTTTCGTTAATG GGGCTGTTTATTTTTTAGCTTCGTTAATGGGGTTTGCTTTCCCCCTTTTTCTTTTTATTTCCTTGTTGTATATGTTGTTG GACCTCTTTTTAATTGCATTTTGGTTTTCTATCAATATATATTGTTTGTTTCTCAAAAAAAAAATGATGGTTGATGCATG TGTTTGTGGCTGTATGATTAAGAAAATTGTAGATGACTGGGTTCTATGCCAGGGTTCTAAGAAGAAACATGTGCTGTCTA AACTCAAGCTCGCAGCTGAGAGAGACAAAGTATCATCTGTGAATTGTTCTATTTGGGTAAAGAGGCAGCATATTTGGGAA AATCAATATTTCAATTTCTGGATTTTCACTGAAAAGGGGTAGTTACCTTGTTGATGATGATAAAAAGAAGAAGATGAAGT GATGATTCTGGCTATGTTGTTTCTGGACTTGTACATGATCCAGTGGTGGTGTTAGGTGGAGAGAGAGGAGATGAAGGGGA GAGAGGAGAGTGAGAGATTAGGGCCGGAAATTAGGATGGTTTAATCTTAAATGAATTACTAATCTTTATGTTATATATTA ACTAATCATTATTTTATATATTAAATATTTTAATTTTTGAAAATAATGAAAATAGAATAAAACCTGCAGTAGCAAGTAAA ACGGAGGTGGTGTAACCTTGCACAAGTTTTTACTTGTGTAGGTTAAATTTTTCCCAAGGAGCAAGATTAATTTGTGACAT TTACACTCCTCTCACAGGCACAATTGGACGTTTGAAACTTGAAATTTGAAATGCTTATGTAGAGACCTATATATTTATGA GTACCCCAATAAATTGATCTATAAGCCCAAAACACTCATCAGCAATGAGCTAGCTTTCAGGGCAGACGAGTTCCCCCTAG ATATATATTTATGATTCTGTCCCACAAATAGAGAAAGACTTAACCCAAATTCTAAGAGACAAATCTTCATTAAAGACTAA GGTTCACTAATTCCAGTATATTGTTATTACTAGCTAACCAAAGAAGAACTGTAATTGCAGGACATTGACAAGAAGCACAT TGTAGCAGTCCATTCTCTTCGAAACATAATAATGGGGACAACCCTTATGGCCACAACATCCATTCTCCTCTGTGCTGGCC TAGGAGCAGTCATCAGCAGCAGTTACAGTGTTAAAAAGTCAATCGACGACTCAGTTTATGGAGCAAATGGTGAAGTTGTG GTGACACTGAAATACGCCATCATCCTCACCATATTATCATGCTCATTTTTCTGTCACACTCTAGCTGCAGGGTTTGTGAA TCAAGTGAATATCCTCATTTGCACTCCACAAGATGTCAAGTCCATGGTAACACCAGAGTATTTGACTGAGCATATGAGAA AGGCAACAATTTTGAACGTGGTAGGGAACAGGCTTTTCTATTCCGCACTTTCCTTGACACTTTGGATCTTTGGGCCTGTG CTACCTTTCTTGTCTTCAATTGTAATGGTGTTTGTACTATACAAACTTGACTTTGTGCCTGGGAAGAACAGCAACAACAA GGTAGAGGATTTGATACAAAATCAAGTTTGAGACTCAATTGCCCATGAGGAATCTTATCTATATACTTTAGAAAAGAGGA AGGCTATGAGCCCCACCTCCATGACATGACACTCCAAGACCCACTCTCTACCACCCCCCTCTTTACGTGACAAATGTCAC CTCCTAATTATTTTGGACCTCAATTGTAAAAGCCCAATTACGTATTTCAGTTTTTAGCCCATTAATCAATGAATGGGGTT TTTCATTTAATGGTTTAATGACTCTTAATTTGTTTCCAAGCTTCTGATGCAAAAACAATAAAAACGTAATAATT
CDS sequence (LotjaGi2g1v0169200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATGGAAAAAATATTACATGGACATGATGCTTGTGCCATTGGGGTTAGTCATCATCCTTGCATATCATGTCTTGTT ATGTCACAAGTGTCGGACACAGCCTTTCACCACAATCATGGGACGAGATGCTGATGGTCGCCGATTTTGGGTTGGTGCCA TGATGAAGGACATTGACAAGAAGCACATTGTAGCAGTCCATTCTCTTCGAAACATAATAATGGGGACAACCCTTATGGCC ACAACATCCATTCTCCTCTGTGCTGGCCTAGGAGCAGTCATCAGCAGCAGTTACAGTGTTAAAAAGTCAATCGACGACTC AGTTTATGGAGCAAATGGTGAAGTTGTGGTGACACTGAAATACGCCATCATCCTCACCATATTATCATGCTCATTTTTCT GTCACACTCTAGCTGCAGGGTTTGTGAATCAAGTGAATATCCTCATTTGCACTCCACAAGATGTCAAGTCCATGGTAACA CCAGAGTATTTGACTGAGCATATGAGAAAGGCAACAATTTTGAACGTGGTAGGGAACAGGCTTTTCTATTCCGCACTTTC CTTGACACTTTGGATCTTTGGGCCTGTGCTACCTTTCTTGTCTTCAATTGTAATGGTGTTTGTACTATACAAACTTGACT TTGTGCCTGGGAAGAACAGCAACAACAAGGTAGAGGATTTGATACAAAATCAAGTTTGA
Protein sequence (LotjaGi2g1v0169200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEWKKYYMDMMLVPLGLVIILAYHVLLCHKCRTQPFTTIMGRDADGRRFWVGAMMKDIDKKHIVAVHSLRNIIMGTTLMA TTSILLCAGLGAVISSSYSVKKSIDDSVYGANGEVVVTLKYAIILTILSCSFFCHTLAAGFVNQVNILICTPQDVKSMVT PEYLTEHMRKATILNVVGNRLFYSALSLTLWIFGPVLPFLSSIVMVFVLYKLDFVPGKNSNNKVEDLIQNQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 1 | 231 | 231 | 7.8E-115 | – | |
| PANTHER | 1 | 231 | 231 | 7.8E-115 | – | |
| TMHMM | 10 | 27 | 18 | - | – | |
| Pfam | 12 | 215 | 204 | 9.5E-67 | ||
| Phobius | 12 | 23 | 12 | - | – | |
| Phobius | 24 | 28 | 5 | - | – | |
| Phobius | 29 | 71 | 43 | - | – | |
| Phobius | 72 | 94 | 23 | - | – | |
| TMHMM | 72 | 94 | 23 | - | – | |
| Phobius | 95 | 114 | 20 | - | – | |
| Phobius | 115 | 138 | 24 | - | – | |
| TMHMM | 121 | 143 | 23 | - | – | |
| Phobius | 139 | 187 | 49 | - | – | |
| TMHMM | 188 | 210 | 23 | - | – | |
| Phobius | 188 | 210 | 23 | - | – | |
| Phobius | 211 | 232 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0169200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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